Wall clock time and date at job start Tue Mar 31 2020 01:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99961 * 2 1 4 4 H 1.48503 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47046 * 300.00147 * 3 2 1 6 6 H 1.48504 * 109.47019 * 59.99877 * 3 2 1 7 7 C 1.37881 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45848 * 179.97438 * 9 7 2 11 11 C 1.53184 * 109.31562 * 178.62897 * 10 9 7 12 12 N 1.46930 * 108.77604 * 54.63195 * 11 10 9 13 13 C 1.34778 * 120.62751 * 126.36990 * 12 11 10 14 14 O 1.21279 * 120.00192 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99737 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47191 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47415 * 175.00056 * 16 15 13 18 18 C 1.53000 * 109.47233 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 17 16 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.52997 * 109.47232 * 294.99929 * 16 15 13 22 22 C 1.46918 * 118.74012 * 306.64635 * 12 11 10 23 23 C 1.52765 * 109.00747 * 53.30481 * 22 12 11 24 24 H 0.96999 * 120.00404 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46428 * 299.96660 * 9 7 2 26 26 H 1.09001 * 109.49480 * 58.67143 * 10 9 7 27 27 H 1.09007 * 109.52282 * 298.59804 * 10 9 7 28 28 H 1.09002 * 109.58435 * 294.84673 * 11 10 9 29 29 H 1.09002 * 109.70660 * 174.48930 * 11 10 9 30 30 H 1.09000 * 109.47355 * 60.00104 * 15 13 12 31 31 H 1.09001 * 109.47069 * 299.99896 * 15 13 12 32 32 H 1.09002 * 109.47497 * 54.99704 * 16 15 13 33 33 H 1.08992 * 109.47063 * 59.99950 * 17 16 15 34 34 H 1.09004 * 109.46733 * 299.99664 * 17 16 15 35 35 H 1.09002 * 109.47398 * 59.99826 * 18 17 16 36 36 H 1.09001 * 109.47194 * 180.02562 * 18 17 16 37 37 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 39 39 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 41 41 H 1.09002 * 109.47153 * 299.99992 * 21 16 15 42 42 H 1.09001 * 109.47289 * 60.00075 * 21 16 15 43 43 H 1.08996 * 109.58975 * 173.14195 * 22 12 11 44 44 H 1.08997 * 109.58938 * 293.57099 * 22 12 11 45 45 H 1.09000 * 109.56230 * 185.54887 * 23 22 12 46 46 H 1.09008 * 109.38350 * 65.52023 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2456 -3.6623 0.0005 11 6 1.4766 -4.9866 0.0351 12 7 0.5223 -5.0087 -1.0819 13 6 0.5122 -6.0344 -1.9561 14 8 1.2960 -6.9506 -1.8252 15 6 -0.4723 -6.0423 -3.0970 16 6 -0.2736 -7.3078 -3.9335 17 6 -1.3522 -7.3782 -5.0163 18 6 -1.1538 -8.6441 -5.8524 19 6 0.2272 -8.6098 -6.5098 20 6 1.3059 -8.5395 -5.4271 21 6 1.1075 -7.2730 -4.5909 22 6 -0.4164 -3.8885 -1.2312 23 6 0.3702 -2.5790 -1.2484 24 1 -0.4851 0.8400 -0.0004 25 1 0.6244 -2.5568 0.8906 26 1 2.8881 -3.5915 0.8782 27 1 2.8561 -3.6195 -0.9015 28 1 0.9370 -5.0713 0.9784 29 1 2.1735 -5.8190 -0.0632 30 1 -0.3105 -5.1645 -3.7227 31 1 -1.4877 -6.0238 -2.7009 32 1 -0.3474 -8.1843 -3.2896 33 1 -1.2784 -6.5018 -5.6602 34 1 -2.3362 -7.4031 -4.5479 35 1 -1.2280 -9.5203 -5.2082 36 1 -1.9220 -8.6940 -6.6241 37 1 0.3685 -9.5114 -7.1058 38 1 0.3014 -7.7336 -7.1540 39 1 2.2899 -8.5146 -5.8955 40 1 1.2318 -9.4157 -4.7830 41 1 1.1814 -6.3966 -5.2348 42 1 1.8760 -7.2229 -3.8196 43 1 -0.9666 -3.9949 -2.1661 44 1 -1.1135 -3.8817 -0.3934 45 1 -0.3224 -1.7374 -1.2597 46 1 0.9978 -2.5456 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260324542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:36 Heat of formation + Delta-G solvation = -92.428520 kcal Electronic energy + Delta-G solvation = -22708.239432 eV Core-core repulsion = 19595.134705 eV Total energy + Delta-G solvation = -3113.104727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30007 -39.39506 -38.16242 -35.31275 -33.84221 -32.84886 -31.71122 -31.51115 -28.69419 -27.44881 -24.68251 -23.93039 -23.43947 -22.53331 -21.24392 -20.55765 -19.63172 -18.56515 -17.81799 -16.80509 -16.52071 -16.44906 -16.11636 -15.23514 -15.07726 -14.92922 -14.85465 -14.68459 -14.46355 -14.18101 -13.84844 -13.41020 -13.22512 -13.10600 -12.93557 -12.81769 -12.79568 -12.47440 -12.39320 -12.15260 -11.94704 -11.92672 -11.79718 -11.48116 -11.28842 -11.19703 -11.00302 -10.87120 -10.78957 -10.47257 -10.36862 -9.49165 -8.08349 -6.21395 1.39805 1.43262 1.53142 1.71080 2.16094 2.43892 3.18135 3.60001 3.75997 3.86848 4.00601 4.14102 4.26242 4.29436 4.36279 4.37525 4.49441 4.51648 4.56848 4.59969 4.64691 4.70734 4.74305 4.81197 4.85879 4.88246 4.90192 4.99118 5.08370 5.18578 5.24026 5.25962 5.30194 5.34521 5.36945 5.43894 5.45279 5.57743 5.58930 5.65766 5.67543 5.98693 6.14205 6.39384 6.58616 6.87938 7.26767 7.46299 8.95181 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.003621 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.219365 B = 7730.831556 C = 7955.500311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.117 3.883 12 N -0.608 5.608 13 C 0.507 3.493 14 O -0.583 6.583 15 C -0.132 4.132 16 C -0.064 4.064 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.120 4.120 22 C 0.114 3.886 23 C -0.116 4.116 24 H 0.262 0.738 25 H 0.003 0.997 26 H 0.060 0.940 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 -13.816 -10.737 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.340 5.340 13 C 0.297 3.703 14 O -0.464 6.464 15 C -0.172 4.172 16 C -0.083 4.083 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.008 4.008 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.021 0.979 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.846 -14.160 -10.656 18.372 hybrid contribution 0.775 1.320 0.488 1.606 sum -4.071 -12.840 -10.168 16.877 Atomic orbital electron populations 1.69944 1.06734 1.27085 1.51235 1.25618 0.95717 1.01877 0.94834 0.85657 0.78956 0.80261 0.77663 1.19834 1.20473 1.20664 1.21568 0.92830 0.92343 1.50582 0.93688 1.18602 0.93029 0.91810 0.93844 1.21842 0.98323 0.94562 1.00382 1.21527 0.92078 0.97996 0.89007 1.48351 1.36073 1.21511 1.28039 1.21325 0.84845 0.80761 0.83364 1.90589 1.43067 1.37344 1.75410 1.21846 0.99250 1.01310 0.94767 1.20857 0.95613 0.95916 0.95939 1.21590 0.97836 0.98802 0.96639 1.21521 0.97078 0.97656 0.99218 1.21542 0.94543 1.02112 0.97269 1.21493 0.99004 0.97373 0.97449 1.21670 0.97298 0.98157 0.98663 1.21823 0.91045 0.85173 1.02724 1.21715 0.99429 0.96406 0.97909 0.92885 0.97897 0.92095 0.94194 0.91495 0.90400 0.87980 0.86840 0.92158 0.91299 0.90766 0.92340 0.90604 0.91309 0.91844 0.92308 0.92840 0.92552 0.93185 0.87928 0.91647 0.90114 0.95437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.80 11.30 21.45 0.24 -49.56 16 2 C 0.02 1.00 5.30 84.66 0.45 1.44 16 3 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -28.92 8.56 25.60 0.22 -28.70 16 8 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 9 C 0.05 2.20 2.07 -11.51 -0.02 2.17 16 10 C -0.11 -4.71 5.30 30.67 0.16 -4.54 16 11 C 0.12 4.27 6.44 86.36 0.56 4.83 16 12 N -0.61 -21.00 2.98 -819.76 -2.44 -23.44 16 13 C 0.51 16.59 7.42 87.66 0.65 17.24 16 14 O -0.58 -22.41 13.38 -3.03 -0.04 -22.45 16 15 C -0.13 -3.14 3.52 29.85 0.11 -3.04 16 16 C -0.06 -1.45 1.84 -10.79 -0.02 -1.47 16 17 C -0.11 -1.85 5.20 30.60 0.16 -1.69 16 18 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 19 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 20 C -0.12 -2.41 5.93 30.61 0.18 -2.23 16 21 C -0.12 -3.00 4.95 30.61 0.15 -2.85 16 22 C 0.11 3.84 6.31 86.22 0.54 4.38 16 23 C -0.12 -5.04 5.14 30.53 0.16 -4.89 16 24 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 30 H 0.10 2.27 7.68 -2.39 -0.02 2.25 16 31 H 0.11 2.18 7.95 -2.39 -0.02 2.16 16 32 H 0.06 1.55 7.96 -2.39 -0.02 1.53 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.59 5.95 -2.39 -0.01 1.57 16 43 H 0.10 2.73 5.93 -2.39 -0.01 2.72 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 45 H 0.08 3.93 6.03 -2.39 -0.01 3.91 16 46 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -60.81 345.02 4.36 -56.45 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.92 Total: 16.93 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 3.65 Total: -22.65 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -2.20 Total: -73.00 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -60.81 4.36 -56.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.976 kcal (2) G-P(sol) polarization free energy of solvation -60.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds