Wall clock time and date at job start Tue Mar 31 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99937 * 2 1 4 4 C 1.53003 * 109.46903 * 130.67814 * 3 2 1 5 5 H 1.08997 * 109.70064 * 187.25962 * 4 3 2 6 6 N 1.46922 * 109.58729 * 66.90469 * 4 3 2 7 7 C 1.34780 * 120.63083 * 6.57703 * 6 4 3 8 8 O 1.21280 * 119.99794 * 356.69006 * 7 6 4 9 9 C 1.50698 * 119.99786 * 176.68670 * 7 6 4 10 10 C 1.53005 * 109.47069 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47069 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00301 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99650 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99982 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99704 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47150 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46847 * 240.00401 * 15 13 11 18 18 H 1.48499 * 109.47236 * 120.00669 * 15 13 11 19 19 C 1.46928 * 118.73876 * 186.86050 * 6 4 3 20 20 C 1.52762 * 109.01214 * 53.30524 * 19 6 4 21 21 C 1.53044 * 109.38104 * 305.58978 * 20 19 6 22 22 C 1.53044 * 109.53534 * 61.24240 * 21 20 19 23 23 C 1.53002 * 109.49407 * 178.68461 * 22 21 20 24 24 C 1.52988 * 109.52752 * 58.59927 * 22 21 20 25 25 H 1.07996 * 119.99823 * 4.98637 * 1 2 3 26 26 H 1.08004 * 120.00004 * 184.99402 * 1 2 3 27 27 H 1.07997 * 119.99425 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47190 * 10.67617 * 3 2 1 29 29 H 1.09003 * 109.46947 * 250.67588 * 3 2 1 30 30 H 1.09001 * 109.46969 * 60.00591 * 9 7 6 31 31 H 1.08993 * 109.47271 * 300.00523 * 9 7 6 32 32 H 1.09001 * 109.46828 * 60.00400 * 10 9 7 33 33 H 1.08999 * 109.46767 * 300.00566 * 10 9 7 34 34 H 0.96991 * 120.00382 * 359.97438 * 14 13 11 35 35 H 1.08997 * 109.58761 * 173.14584 * 19 6 4 36 36 H 1.09007 * 109.57769 * 293.56503 * 19 6 4 37 37 H 1.09001 * 109.56549 * 185.55604 * 20 19 6 38 38 H 1.08995 * 109.38565 * 65.51388 * 20 19 6 39 39 H 1.08999 * 109.46471 * 301.22160 * 21 20 19 40 40 H 1.08998 * 109.45066 * 181.24923 * 21 20 19 41 41 H 1.09008 * 109.46785 * 179.83894 * 23 22 21 42 42 H 1.09000 * 109.47170 * 299.83169 * 23 22 21 43 43 H 1.08995 * 109.47542 * 59.83396 * 23 22 21 44 44 H 1.09002 * 109.47180 * 282.97574 * 24 22 21 45 45 H 1.09000 * 109.47108 * 42.97705 * 24 22 21 46 46 H 1.09006 * 109.47681 * 162.97396 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.1328 1.2766 1.0940 5 1 3.5927 2.2606 1.1839 6 7 4.1595 0.2823 0.7535 7 6 4.1400 -0.3438 -0.4399 8 8 3.2361 -0.1331 -1.2205 9 6 5.2415 -1.3056 -0.8041 10 6 4.9819 -1.8729 -2.2012 11 6 6.0830 -2.8352 -2.5652 12 1 6.8873 -3.0237 -1.8695 13 6 6.0630 -3.4758 -3.7860 14 7 5.0833 -3.2466 -4.6329 15 14 7.4276 -4.6692 -4.2369 16 1 8.4033 -4.7502 -3.1204 17 1 8.1172 -4.1923 -5.4626 18 1 6.8474 -6.0131 -4.4866 19 6 5.2041 -0.0211 1.7411 20 6 4.5426 -0.3935 3.0668 21 6 3.5845 0.7232 3.4877 22 6 2.4912 0.8855 2.4291 23 6 1.5154 1.9798 2.8665 24 6 1.7373 -0.4356 2.2658 25 1 -0.5400 0.9317 -0.0813 26 1 -0.5400 -0.9318 0.0814 27 1 1.8499 -0.9353 -0.0004 28 1 1.3706 2.1247 0.1904 29 1 2.5397 1.4497 -0.9698 30 1 5.2670 -2.1199 -0.0800 31 1 6.1977 -0.7827 -0.7966 32 1 4.9567 -1.0584 -2.9251 33 1 4.0255 -2.3957 -2.2090 34 1 4.3746 -2.6273 -4.3986 35 1 5.8087 -0.8567 1.3885 36 1 5.8365 0.8551 1.8848 37 1 5.3074 -0.5244 3.8323 38 1 3.9867 -1.3231 2.9451 39 1 4.1367 1.6578 3.5856 40 1 3.1285 0.4688 4.4444 41 1 0.7385 2.0970 2.1109 42 1 1.0591 1.7012 3.8164 43 1 2.0531 2.9206 2.9838 44 1 2.3396 -1.1272 1.6766 45 1 1.5443 -0.8676 3.2478 46 1 0.7908 -0.2535 1.7567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293197231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:36 Heat of formation + Delta-G solvation = 6.214982 kcal Electronic energy + Delta-G solvation = -23780.089193 eV Core-core repulsion = 20671.261969 eV Total energy + Delta-G solvation = -3108.827224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19179 -38.02182 -35.71283 -33.83879 -33.50307 -31.70090 -30.95322 -28.57816 -27.21219 -26.00523 -25.21868 -23.77295 -21.88644 -21.63380 -19.68888 -19.14929 -18.17371 -17.08069 -16.22298 -15.77357 -15.47281 -15.22944 -14.52685 -14.22609 -13.98910 -13.77866 -13.62042 -13.41996 -13.06037 -12.74270 -12.50900 -12.39463 -12.11074 -12.01235 -11.84545 -11.56135 -11.47343 -11.39356 -11.06054 -10.95321 -10.79837 -10.61900 -10.42055 -10.23863 -10.11790 -10.03432 -9.89075 -8.65191 -8.48654 -8.47441 -8.27493 -8.05693 -6.31352 -4.01511 2.62242 3.17892 3.22081 3.45233 3.49984 3.62158 4.49507 4.57512 4.63298 4.65396 4.89646 5.07935 5.11277 5.23484 5.27225 5.36020 5.45166 5.46289 5.50056 5.56292 5.62336 5.65587 5.75283 5.77691 5.84770 5.89696 5.93210 5.95441 6.06585 6.09298 6.11519 6.16616 6.21551 6.34721 6.45129 6.49432 6.71494 6.82451 7.02636 7.16498 7.52212 7.57735 7.72052 8.20935 8.51115 8.68422 8.93215 9.72087 11.09683 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025280 B = 0.004677 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.313347 B = 5984.684251 C = 6657.910217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.055 4.055 3 C -0.101 4.101 4 C 0.161 3.839 5 H 0.067 0.933 6 N -0.616 5.616 7 C 0.507 3.493 8 O -0.521 6.521 9 C -0.123 4.123 10 C 0.026 3.974 11 C -0.608 4.608 12 H 0.049 0.951 13 C 0.016 3.984 14 N -0.912 5.912 15 Si 1.074 2.926 16 H -0.290 1.290 17 H -0.287 1.287 18 H -0.287 1.287 19 C 0.108 3.892 20 C -0.137 4.137 21 C -0.107 4.107 22 C -0.073 4.073 23 C -0.139 4.139 24 C -0.177 4.177 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.273 0.727 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 9.954 18.440 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.073 4.073 3 C -0.138 4.138 4 C 0.058 3.942 5 H 0.085 0.915 6 N -0.351 5.351 7 C 0.299 3.701 8 O -0.398 6.398 9 C -0.163 4.163 10 C -0.012 4.012 11 C -0.646 4.646 12 H 0.067 0.933 13 C -0.189 4.189 14 N -0.548 5.548 15 Si 0.903 3.097 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.015 4.015 20 C -0.176 4.176 21 C -0.145 4.145 22 C -0.074 4.074 23 C -0.197 4.197 24 C -0.233 4.233 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.917 9.050 16.810 19.489 hybrid contribution -0.391 0.987 1.444 1.792 sum -4.308 10.037 18.254 21.272 Atomic orbital electron populations 1.23460 0.95944 1.01013 1.10409 1.22936 0.94839 0.98883 0.90608 1.21450 0.96445 0.95167 1.00692 1.21217 0.88199 0.90918 0.93876 0.91499 1.48225 1.28705 1.41985 1.16151 1.21449 0.87653 0.80874 0.80173 1.90680 1.35757 1.62688 1.50698 1.21772 0.95718 0.96637 1.02207 1.19008 0.97201 0.95713 0.89238 1.22082 1.09957 1.28031 1.04550 0.93297 1.25822 1.01003 0.98988 0.93058 1.70671 1.11466 1.35128 1.37532 0.83484 0.74825 0.75933 0.75481 1.21577 1.21369 1.21371 1.21610 0.89916 1.01487 0.88469 1.21877 0.99221 0.99563 0.96902 1.21610 0.96393 0.98569 0.97937 1.20903 0.95247 0.96599 0.94613 1.21850 0.98946 0.97557 1.01305 1.23013 1.02776 0.96176 1.01310 0.89464 0.89304 0.87132 0.92719 0.86731 0.90398 0.90308 0.96780 0.96830 0.91678 0.89120 0.91809 0.90949 0.91128 0.92120 0.91923 0.92054 0.92620 0.92912 0.92055 0.93936 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -3.85 12.37 29.01 0.36 -3.49 16 2 C -0.05 -0.85 3.97 -36.03 -0.14 -1.00 16 3 C -0.10 -1.46 4.53 -27.88 -0.13 -1.59 16 4 C 0.16 2.05 2.57 -67.60 -0.17 1.87 16 5 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 6 N -0.62 -8.72 2.17 -165.48 -0.36 -9.08 16 7 C 0.51 9.33 6.71 -10.98 -0.07 9.26 16 8 O -0.52 -10.98 9.52 5.56 0.05 -10.93 16 9 C -0.12 -2.49 4.01 -27.88 -0.11 -2.61 16 10 C 0.03 0.69 3.57 -27.88 -0.10 0.59 16 11 C -0.61 -17.40 9.11 -34.44 -0.31 -17.71 16 12 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 13 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 14 N -0.91 -28.80 13.65 55.43 0.76 -28.04 16 15 Si 1.07 25.59 29.90 -169.99 -5.08 20.51 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.11 1.23 6.31 -3.93 -0.02 1.20 16 20 C -0.14 -1.33 5.76 -26.83 -0.15 -1.49 16 21 C -0.11 -1.00 4.64 -26.69 -0.12 -1.12 16 22 C -0.07 -0.77 0.55 -154.39 -0.08 -0.86 16 23 C -0.14 -1.28 8.18 37.16 0.30 -0.98 16 24 C -0.18 -2.13 5.93 37.15 0.22 -1.91 16 25 H 0.09 1.13 7.89 -52.49 -0.41 0.71 16 26 H 0.09 1.22 8.06 -52.48 -0.42 0.80 16 27 H 0.11 2.01 4.80 -52.49 -0.25 1.75 16 28 H 0.05 0.69 6.68 -51.93 -0.35 0.34 16 29 H 0.12 2.01 5.81 -52.76 -0.31 1.70 16 30 H 0.08 1.47 7.54 -51.93 -0.39 1.08 16 31 H 0.08 1.50 8.07 -51.93 -0.42 1.08 16 32 H 0.01 0.40 7.97 -51.93 -0.41 -0.01 16 33 H 0.01 0.38 7.97 -51.93 -0.41 -0.03 16 34 H 0.27 8.73 7.22 -40.82 -0.29 8.44 16 35 H 0.09 1.06 5.95 -51.93 -0.31 0.75 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.77 6.75 -51.93 -0.35 0.42 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.59 6.78 -51.92 -0.35 0.24 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.87 4.98 -51.93 -0.26 0.61 16 45 H 0.04 0.47 8.03 -51.93 -0.42 0.05 16 46 H 0.10 1.22 3.72 -51.93 -0.19 1.03 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -31.79 333.19 -7.97 -39.76 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.72 Total: 2.22 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -0.64 Total: -19.46 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.40 Total: -37.12 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.05 Total: -10.93 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.79 -7.97 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293197231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.972 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds