Wall clock time and date at job start Tue Mar 31 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99937 * 2 1 4 4 C 1.53003 * 109.46903 * 130.67814 * 3 2 1 5 5 H 1.08997 * 109.70064 * 187.25962 * 4 3 2 6 6 N 1.46922 * 109.58729 * 66.90469 * 4 3 2 7 7 C 1.34780 * 120.63083 * 6.57703 * 6 4 3 8 8 O 1.21280 * 119.99794 * 356.69006 * 7 6 4 9 9 C 1.50698 * 119.99786 * 176.68670 * 7 6 4 10 10 C 1.53005 * 109.47069 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47069 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00301 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99650 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99982 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99704 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47150 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46847 * 240.00401 * 15 13 11 18 18 H 1.48499 * 109.47236 * 120.00669 * 15 13 11 19 19 C 1.46928 * 118.73876 * 186.86050 * 6 4 3 20 20 C 1.52762 * 109.01214 * 53.30524 * 19 6 4 21 21 C 1.53044 * 109.38104 * 305.58978 * 20 19 6 22 22 C 1.53044 * 109.53534 * 61.24240 * 21 20 19 23 23 C 1.53002 * 109.49407 * 178.68461 * 22 21 20 24 24 C 1.52988 * 109.52752 * 58.59927 * 22 21 20 25 25 H 1.07996 * 119.99823 * 4.98637 * 1 2 3 26 26 H 1.08004 * 120.00004 * 184.99402 * 1 2 3 27 27 H 1.07997 * 119.99425 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47190 * 10.67617 * 3 2 1 29 29 H 1.09003 * 109.46947 * 250.67588 * 3 2 1 30 30 H 1.09001 * 109.46969 * 60.00591 * 9 7 6 31 31 H 1.08993 * 109.47271 * 300.00523 * 9 7 6 32 32 H 1.09001 * 109.46828 * 60.00400 * 10 9 7 33 33 H 1.08999 * 109.46767 * 300.00566 * 10 9 7 34 34 H 0.96991 * 120.00382 * 359.97438 * 14 13 11 35 35 H 1.08997 * 109.58761 * 173.14584 * 19 6 4 36 36 H 1.09007 * 109.57769 * 293.56503 * 19 6 4 37 37 H 1.09001 * 109.56549 * 185.55604 * 20 19 6 38 38 H 1.08995 * 109.38565 * 65.51388 * 20 19 6 39 39 H 1.08999 * 109.46471 * 301.22160 * 21 20 19 40 40 H 1.08998 * 109.45066 * 181.24923 * 21 20 19 41 41 H 1.09008 * 109.46785 * 179.83894 * 23 22 21 42 42 H 1.09000 * 109.47170 * 299.83169 * 23 22 21 43 43 H 1.08995 * 109.47542 * 59.83396 * 23 22 21 44 44 H 1.09002 * 109.47180 * 282.97574 * 24 22 21 45 45 H 1.09000 * 109.47108 * 42.97705 * 24 22 21 46 46 H 1.09006 * 109.47681 * 162.97396 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.1328 1.2766 1.0940 5 1 3.5927 2.2606 1.1839 6 7 4.1595 0.2823 0.7535 7 6 4.1400 -0.3438 -0.4399 8 8 3.2361 -0.1331 -1.2205 9 6 5.2415 -1.3056 -0.8041 10 6 4.9819 -1.8729 -2.2012 11 6 6.0830 -2.8352 -2.5652 12 1 6.8873 -3.0237 -1.8695 13 6 6.0630 -3.4758 -3.7860 14 7 5.0833 -3.2466 -4.6329 15 14 7.4276 -4.6692 -4.2369 16 1 8.4033 -4.7502 -3.1204 17 1 8.1172 -4.1923 -5.4626 18 1 6.8474 -6.0131 -4.4866 19 6 5.2041 -0.0211 1.7411 20 6 4.5426 -0.3935 3.0668 21 6 3.5845 0.7232 3.4877 22 6 2.4912 0.8855 2.4291 23 6 1.5154 1.9798 2.8665 24 6 1.7373 -0.4356 2.2658 25 1 -0.5400 0.9317 -0.0813 26 1 -0.5400 -0.9318 0.0814 27 1 1.8499 -0.9353 -0.0004 28 1 1.3706 2.1247 0.1904 29 1 2.5397 1.4497 -0.9698 30 1 5.2670 -2.1199 -0.0800 31 1 6.1977 -0.7827 -0.7966 32 1 4.9567 -1.0584 -2.9251 33 1 4.0255 -2.3957 -2.2090 34 1 4.3746 -2.6273 -4.3986 35 1 5.8087 -0.8567 1.3885 36 1 5.8365 0.8551 1.8848 37 1 5.3074 -0.5244 3.8323 38 1 3.9867 -1.3231 2.9451 39 1 4.1367 1.6578 3.5856 40 1 3.1285 0.4688 4.4444 41 1 0.7385 2.0970 2.1109 42 1 1.0591 1.7012 3.8164 43 1 2.0531 2.9206 2.9838 44 1 2.3396 -1.1272 1.6766 45 1 1.5443 -0.8676 3.2478 46 1 0.7908 -0.2535 1.7567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293197231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:36 Heat of formation + Delta-G solvation = -11.435934 kcal Electronic energy + Delta-G solvation = -23780.854594 eV Core-core repulsion = 20671.261969 eV Total energy + Delta-G solvation = -3109.592625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.33830 -39.29113 -36.84561 -35.89637 -34.65348 -32.93232 -32.59943 -29.80999 -28.09942 -27.13805 -26.86374 -25.16816 -23.60409 -22.68101 -20.89615 -20.39339 -19.29001 -18.96172 -17.76824 -17.01211 -16.77398 -16.20475 -15.64768 -15.56174 -15.47579 -15.23681 -15.13069 -14.39651 -14.26648 -14.01766 -13.93220 -13.67128 -13.54556 -13.16088 -12.94304 -12.79995 -12.76633 -12.53750 -12.46876 -12.07745 -12.01348 -11.92183 -11.86434 -11.79403 -11.54347 -11.28155 -11.18686 -10.76019 -10.57040 -9.97950 -9.62267 -9.21907 -8.70103 -6.41843 1.37783 1.52552 1.63550 1.78845 1.79994 2.03283 2.57905 3.16366 3.55089 3.73390 3.79671 3.92350 4.03148 4.10594 4.23795 4.29760 4.34227 4.34787 4.37311 4.43585 4.57696 4.71526 4.78966 4.79560 4.81303 4.88122 4.89713 4.99902 5.02337 5.09751 5.14612 5.16180 5.22075 5.28522 5.32026 5.36801 5.38763 5.47320 5.56806 5.69306 5.81886 5.93491 5.98911 6.16501 6.45614 6.51711 7.30194 7.43809 8.69669 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025280 B = 0.004677 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.313347 B = 5984.684251 C = 6657.910217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.065 4.065 3 C -0.096 4.096 4 C 0.158 3.842 5 H 0.086 0.914 6 N -0.604 5.604 7 C 0.505 3.495 8 O -0.558 6.558 9 C -0.112 4.112 10 C 0.033 3.967 11 C -0.618 4.618 12 H 0.063 0.937 13 C -0.044 4.044 14 N -0.940 5.940 15 Si 1.128 2.872 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.099 3.901 20 C -0.133 4.133 21 C -0.104 4.104 22 C -0.067 4.067 23 C -0.136 4.136 24 C -0.171 4.171 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.094 0.906 32 H -0.021 1.021 33 H -0.023 1.023 34 H 0.252 0.748 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.033 0.967 45 H 0.052 0.948 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 10.809 21.378 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.083 4.083 3 C -0.133 4.133 4 C 0.055 3.945 5 H 0.103 0.897 6 N -0.337 5.337 7 C 0.295 3.705 8 O -0.438 6.438 9 C -0.152 4.152 10 C -0.005 4.005 11 C -0.655 4.655 12 H 0.082 0.918 13 C -0.241 4.241 14 N -0.577 5.577 15 Si 0.948 3.052 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.023 4.023 20 C -0.171 4.171 21 C -0.142 4.142 22 C -0.068 4.068 23 C -0.193 4.193 24 C -0.228 4.228 25 H 0.124 0.876 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.113 0.887 32 H -0.002 1.002 33 H -0.004 1.004 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.594 9.935 19.818 22.320 hybrid contribution -0.863 0.742 0.564 1.270 sum -3.457 10.677 20.382 23.267 Atomic orbital electron populations 1.23591 0.95483 1.01864 1.08905 1.22743 0.95221 0.98223 0.92116 1.21311 0.97171 0.95109 0.99668 1.21426 0.87510 0.91151 0.94381 0.89650 1.48161 1.29481 1.41018 1.15019 1.21050 0.86805 0.81157 0.81496 1.90699 1.36808 1.63940 1.52372 1.21522 0.97348 0.97771 0.98556 1.18810 0.95091 0.94205 0.92395 1.22536 1.10404 1.27768 1.04818 0.91850 1.27619 1.02506 1.00572 0.93358 1.70838 1.12309 1.35986 1.38598 0.82836 0.72313 0.73641 0.76432 1.18463 1.20563 1.20634 1.21923 0.89480 1.02459 0.88448 1.21858 0.99805 0.99017 0.96401 1.21618 0.95769 0.99079 0.97699 1.20879 0.95955 0.96199 0.93795 1.21826 0.98446 0.97502 1.01550 1.22899 1.02093 0.96655 1.01117 0.87635 0.89273 0.90378 0.90547 0.90248 0.89046 0.88735 1.00231 1.00443 0.93905 0.89648 0.89381 0.88336 0.92825 0.90446 0.90521 0.92790 0.91453 0.91376 0.94831 0.92897 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -7.48 12.37 67.78 0.84 -6.64 16 2 C -0.06 -2.10 3.97 25.64 0.10 -2.00 16 3 C -0.10 -2.79 4.53 29.85 0.14 -2.66 16 4 C 0.16 3.79 2.57 44.98 0.12 3.90 16 5 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 6 N -0.60 -16.74 2.17 -795.84 -1.72 -18.46 16 7 C 0.50 19.28 6.71 87.66 0.59 19.86 16 8 O -0.56 -25.21 9.52 -3.03 -0.03 -25.24 16 9 C -0.11 -4.65 4.01 29.85 0.12 -4.53 16 10 C 0.03 1.82 3.57 29.85 0.11 1.93 16 11 C -0.62 -36.00 9.11 25.60 0.23 -35.77 16 12 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 13 C -0.04 -2.63 5.46 84.66 0.46 -2.16 16 14 N -0.94 -61.70 13.65 21.45 0.29 -61.40 16 15 Si 1.13 51.07 29.90 68.60 2.05 53.12 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 C 0.10 2.01 6.31 86.22 0.54 2.55 16 20 C -0.13 -2.18 5.76 30.53 0.18 -2.01 16 21 C -0.10 -1.53 4.64 30.62 0.14 -1.39 16 22 C -0.07 -1.28 0.55 -52.10 -0.03 -1.30 16 23 C -0.14 -2.05 8.18 71.98 0.59 -1.46 16 24 C -0.17 -4.00 5.93 71.98 0.43 -3.58 16 25 H 0.11 2.61 7.89 -2.91 -0.02 2.59 16 26 H 0.09 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.08 3.05 4.80 -2.91 -0.01 3.04 16 28 H 0.08 1.85 6.68 -2.39 -0.02 1.83 16 29 H 0.08 2.93 5.81 -15.52 -0.09 2.84 16 30 H 0.09 3.49 7.54 -2.39 -0.02 3.47 16 31 H 0.09 3.57 8.07 -2.39 -0.02 3.55 16 32 H -0.02 -1.28 7.97 -2.39 -0.02 -1.30 16 33 H -0.02 -1.42 7.97 -2.39 -0.02 -1.44 16 34 H 0.25 17.20 7.22 -92.71 -0.67 16.53 16 35 H 0.09 1.83 5.95 -2.39 -0.01 1.82 16 36 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.08 6.75 -2.39 -0.02 1.07 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.90 6.78 -2.38 -0.02 0.89 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.03 0.97 4.98 -2.39 -0.01 0.96 16 45 H 0.05 1.09 8.03 -2.39 -0.02 1.07 16 46 H 0.09 2.20 3.72 -2.38 -0.01 2.19 16 Total: -1.00 -73.45 333.19 6.11 -67.34 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.96 Total: 19.89 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 4.55 Total: -35.25 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.43 Total: -79.87 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.03 Total: -25.24 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -73.45 6.11 -67.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293197231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.907 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds