Wall clock time and date at job start Tue Mar 31 2020 02:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.01297 * 2 1 4 4 C 1.53876 * 110.03257 * 121.39339 * 2 1 3 5 5 C 1.54259 * 106.59641 * 119.28616 * 4 2 1 6 6 C 1.54893 * 104.20064 * 23.61022 * 5 4 2 7 7 H 1.09000 * 110.75578 * 80.36814 * 6 5 4 8 8 C 1.50691 * 110.75711 * 203.55718 * 6 5 4 9 9 O 1.21296 * 120.00160 * 109.02811 * 8 6 5 10 10 N 1.34780 * 120.00043 * 289.03096 * 8 6 5 11 11 C 1.37093 * 120.00133 * 3.88472 * 10 8 6 12 12 H 1.07991 * 120.00250 * 124.66316 * 11 10 8 13 13 C 1.38946 * 119.99919 * 304.66506 * 11 10 8 14 14 N 1.31420 * 120.00123 * 336.87420 * 13 11 10 15 15 Si 1.86801 * 120.00077 * 156.87726 * 13 11 10 16 16 H 1.48496 * 109.47207 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47149 * 120.00040 * 15 13 11 18 18 H 1.48503 * 109.47255 * 239.99972 * 15 13 11 19 19 C 1.46510 * 119.99872 * 183.88829 * 10 8 6 20 20 C 1.54268 * 110.02844 * 238.84876 * 19 10 8 21 21 C 1.54958 * 104.16011 * 217.13301 * 20 19 10 22 22 C 1.54890 * 102.77378 * 37.89282 * 21 20 19 23 23 C 1.53869 * 110.03123 * 121.63237 * 19 10 8 24 24 C 1.54270 * 110.03347 * 238.61172 * 2 1 3 25 25 H 1.09000 * 109.47014 * 60.70272 * 1 2 3 26 26 H 1.09002 * 109.47241 * 300.69771 * 1 2 3 27 27 H 1.09001 * 109.46817 * 180.69638 * 1 2 3 28 28 H 1.08999 * 109.47383 * 59.30156 * 3 2 1 29 29 H 1.09001 * 109.47054 * 179.30131 * 3 2 1 30 30 H 1.09001 * 109.47312 * 299.29671 * 3 2 1 31 31 H 1.09003 * 110.02782 * 238.57385 * 4 2 1 32 32 H 1.08999 * 110.02828 * 359.97438 * 4 2 1 33 33 H 1.09008 * 110.48498 * 142.28485 * 5 4 2 34 34 H 1.08997 * 110.48673 * 264.79362 * 5 4 2 35 35 H 0.97000 * 119.99814 * 185.05002 * 14 13 11 36 36 H 1.08998 * 110.01439 * 0.24027 * 19 10 8 37 37 H 1.09003 * 110.49017 * 335.78494 * 20 19 10 38 38 H 1.09008 * 110.48599 * 98.42572 * 20 19 10 39 39 H 1.08999 * 110.72246 * 279.57854 * 21 20 19 40 40 H 1.09005 * 110.92252 * 156.29490 * 21 20 19 41 41 H 1.09002 * 110.48525 * 203.39993 * 22 21 20 42 42 H 1.09005 * 110.60283 * 80.81650 * 22 21 20 43 43 H 1.08999 * 110.03322 * 238.56614 * 23 19 10 44 44 H 1.09002 * 110.03675 * 0.02562 * 23 19 10 45 45 H 1.08998 * 110.48338 * 335.78312 * 24 2 1 46 46 H 1.08995 * 110.48595 * 98.42324 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0571 -0.7531 1.2340 5 6 2.8875 -1.9403 0.7043 6 6 3.3137 -1.5010 -0.7186 7 1 4.1710 -0.8292 -0.6748 8 6 3.6207 -2.7000 -1.5782 9 8 2.8705 -3.0074 -2.4805 10 7 4.7287 -3.4309 -1.3445 11 6 5.5343 -3.1320 -0.2762 12 1 5.7672 -3.8928 0.4540 13 6 6.0512 -1.8502 -0.1331 14 7 6.1696 -1.0684 -1.1828 15 14 6.5779 -1.2383 1.5514 16 1 6.3446 -2.3028 2.5601 17 1 8.0216 -0.8918 1.5231 18 1 5.7867 -0.0338 1.9102 19 6 5.0722 -4.5447 -2.2321 20 6 5.1470 -5.8584 -1.4267 21 6 6.3243 -6.6321 -2.0720 22 6 7.3421 -5.5076 -2.3857 23 6 6.4672 -4.3218 -2.8419 24 6 2.0585 -0.7549 -1.2373 25 1 -0.3633 0.5029 -0.8962 26 1 -0.3634 0.5246 0.8837 27 1 -0.3633 -1.0276 0.0125 28 1 1.6851 1.9586 0.8836 29 1 3.1435 1.4273 0.0125 30 1 1.7055 1.9511 -0.8962 31 1 2.6867 -0.0945 1.8325 32 1 1.2229 -1.1181 1.8331 33 1 3.7638 -2.1030 1.3318 34 1 2.2779 -2.8428 0.6605 35 1 6.5974 -0.2021 -1.0965 36 1 4.3284 -4.6339 -3.0238 37 1 5.3564 -5.6512 -0.3772 38 1 4.2188 -6.4210 -1.5276 39 1 6.0035 -7.1293 -2.9874 40 1 6.7477 -7.3518 -1.3713 41 1 8.0155 -5.8149 -3.1859 42 1 7.9083 -5.2426 -1.4928 43 1 6.4005 -4.3037 -3.9298 44 1 6.8888 -3.3851 -2.4773 45 1 1.3143 -1.4652 -1.5973 46 1 2.3297 -0.0526 -2.0255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336339806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:10 Heat of formation + Delta-G solvation = -75.330414 kcal Electronic energy + Delta-G solvation = -24036.862670 eV Core-core repulsion = 20924.499372 eV Total energy + Delta-G solvation = -3112.363297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15442 -39.48427 -38.00913 -35.99693 -33.34494 -32.86515 -29.76146 -29.44591 -28.64665 -28.12716 -26.67993 -25.40443 -22.79482 -21.55890 -20.94443 -20.63136 -19.52847 -18.40986 -17.41539 -17.04537 -16.43081 -16.26306 -15.86778 -15.52974 -15.07535 -14.67382 -14.52226 -14.28899 -14.18675 -14.03700 -13.98945 -13.41016 -13.06097 -12.87261 -12.70660 -12.58020 -12.46007 -12.29932 -12.19583 -12.06337 -11.85645 -11.82376 -11.75745 -11.52155 -11.39632 -11.34210 -11.33248 -11.29461 -11.21645 -10.53025 -10.05018 -9.09744 -8.26951 -6.10676 1.39465 1.47512 1.56074 2.18864 2.34920 3.00309 3.07795 3.73991 3.78363 3.87031 3.92703 3.95491 4.18804 4.43622 4.50320 4.53358 4.59312 4.64328 4.67350 4.70927 4.78970 4.82086 4.86134 4.87381 4.90397 4.92248 4.97835 5.10356 5.10832 5.13904 5.16558 5.18557 5.22735 5.25231 5.32929 5.42169 5.48602 5.52357 5.53156 5.57654 5.62700 5.64555 5.70921 6.22925 6.75516 7.07745 7.73955 8.19502 8.77727 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.007216 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.232016 B = 3879.284959 C = 4717.148456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 C -0.132 4.132 4 C -0.110 4.110 5 C -0.096 4.096 6 C -0.102 4.102 7 H 0.106 0.894 8 C 0.499 3.501 9 O -0.651 6.651 10 N -0.449 5.449 11 C -0.339 4.339 12 H 0.081 0.919 13 C 0.035 3.965 14 N -0.882 5.882 15 Si 0.940 3.060 16 H -0.254 1.254 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.119 3.881 20 C -0.122 4.122 21 C -0.108 4.108 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.093 4.093 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.271 0.729 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 -0.545 5.329 6.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.069 4.069 3 C -0.190 4.190 4 C -0.147 4.147 5 C -0.134 4.134 6 C -0.123 4.123 7 H 0.124 0.876 8 C 0.290 3.710 9 O -0.540 6.540 10 N -0.167 5.167 11 C -0.466 4.466 12 H 0.099 0.901 13 C -0.170 4.170 14 N -0.518 5.518 15 Si 0.764 3.236 16 H -0.178 1.178 17 H -0.210 1.210 18 H -0.192 1.192 19 C 0.015 3.985 20 C -0.160 4.160 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.132 4.132 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.046 -0.516 4.850 5.751 hybrid contribution 0.638 0.499 0.080 0.814 sum -2.408 -0.017 4.931 5.487 Atomic orbital electron populations 1.21839 0.92872 1.01654 1.02312 1.21183 0.96517 0.95366 0.93800 1.21862 0.99995 0.94816 1.02293 1.22307 0.99392 0.96152 0.96883 1.22083 0.99104 0.97753 0.94487 1.22267 0.99574 0.95300 0.95116 0.87623 1.21014 0.80044 0.85312 0.84586 1.90421 1.51700 1.74176 1.37693 1.43576 1.19872 1.28029 1.25250 1.19126 1.30173 0.96390 1.00937 0.90149 1.26034 0.94086 0.97094 0.99742 1.70077 1.39875 1.11542 1.30290 0.85698 0.77844 0.79540 0.80529 1.17767 1.20966 1.19194 1.21783 0.95693 0.88470 0.92516 1.22578 0.98779 0.94579 1.00056 1.22404 0.94634 0.96839 1.00706 1.22209 0.97221 0.94217 1.00877 1.22302 0.95424 1.00229 0.98151 1.22299 0.96274 0.97618 0.96963 0.92624 0.90725 0.93177 0.90724 0.94473 0.92486 0.91513 0.89881 0.91538 0.93392 0.91926 0.93378 0.91580 0.92503 0.90796 0.89791 0.90525 0.92268 0.93579 0.92203 0.92907 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.15 71.98 0.59 -2.75 16 2 C -0.07 -2.17 0.94 -51.45 -0.05 -2.22 16 3 C -0.13 -3.79 8.14 71.98 0.59 -3.21 16 4 C -0.11 -3.47 6.11 31.32 0.19 -3.28 16 5 C -0.10 -3.83 5.64 31.67 0.18 -3.65 16 6 C -0.10 -4.70 2.19 -10.23 -0.02 -4.72 16 7 H 0.11 5.28 4.76 -2.39 -0.01 5.27 16 8 C 0.50 26.59 6.63 87.65 0.58 27.17 16 9 O -0.65 -37.99 15.07 -3.08 -0.05 -38.04 16 10 N -0.45 -22.71 2.34 -609.38 -1.42 -24.13 16 11 C -0.34 -16.52 5.97 84.04 0.50 -16.01 16 12 H 0.08 3.87 6.86 -2.92 -0.02 3.85 16 13 C 0.04 1.68 3.12 84.92 0.26 1.95 16 14 N -0.88 -45.64 11.73 21.66 0.25 -45.38 16 15 Si 0.94 37.79 28.15 68.60 1.93 39.72 16 16 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 19 C 0.12 5.47 3.29 45.71 0.15 5.62 16 20 C -0.12 -4.56 6.42 31.69 0.20 -4.36 16 21 C -0.11 -3.21 6.91 31.91 0.22 -2.99 16 22 C -0.11 -3.55 6.83 31.67 0.22 -3.34 16 23 C -0.12 -5.21 6.27 31.32 0.20 -5.01 16 24 C -0.09 -3.86 5.03 31.70 0.16 -3.70 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 2.01 7.67 -2.39 -0.02 1.99 16 32 H 0.08 2.22 7.67 -2.39 -0.02 2.20 16 33 H 0.07 2.69 5.49 -2.38 -0.01 2.68 16 34 H 0.05 1.93 8.05 -2.39 -0.02 1.91 16 35 H 0.27 13.33 8.32 -92.71 -0.77 12.56 16 36 H 0.05 2.42 6.95 -2.39 -0.02 2.40 16 37 H 0.07 2.60 6.46 -2.39 -0.02 2.58 16 38 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 2.97 7.31 -2.39 -0.02 2.96 16 45 H 0.05 2.33 7.10 -2.39 -0.02 2.31 16 46 H 0.04 1.82 7.84 -2.39 -0.02 1.80 16 Total: -1.00 -60.31 342.42 5.61 -54.70 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.93 Total: 33.64 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 3.97 Total: -20.50 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -1.17 Total: -69.52 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.05 Total: -38.04 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.93 Total: 39.72 kcal Total: -60.31 5.61 -54.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336339806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.635 kcal (2) G-P(sol) polarization free energy of solvation -60.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds