Wall clock time and date at job start Tue Mar 31 2020 02:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47202 * 2 1 4 4 C 1.53005 * 109.47168 * 239.99699 * 2 1 3 5 5 C 1.52996 * 109.46857 * 300.00417 * 4 2 1 6 6 C 1.52999 * 109.47288 * 299.99579 * 5 4 2 7 7 C 1.53001 * 109.47113 * 59.99959 * 6 5 4 8 8 C 1.52991 * 109.47297 * 300.00653 * 7 6 5 9 9 H 1.09004 * 109.47295 * 299.99203 * 8 7 6 10 10 C 1.53005 * 109.47077 * 179.97438 * 8 7 6 11 11 C 1.50709 * 109.46770 * 64.99893 * 10 8 7 12 12 O 1.21287 * 120.00010 * 0.02562 * 11 10 8 13 13 N 1.34778 * 119.99477 * 179.97438 * 11 10 8 14 14 C 1.37095 * 119.99475 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99772 * 138.46421 * 14 13 11 16 16 C 1.38955 * 120.00382 * 318.46334 * 14 13 11 17 17 N 1.31401 * 120.00254 * 169.19435 * 16 14 13 18 18 Si 1.86801 * 119.99442 * 349.19222 * 16 14 13 19 19 H 1.48500 * 109.47128 * 95.79026 * 18 16 14 20 20 H 1.48500 * 109.46717 * 215.78495 * 18 16 14 21 21 H 1.48495 * 109.47555 * 335.78639 * 18 16 14 22 22 C 1.46503 * 120.00324 * 0.02562 * 13 11 10 23 23 C 1.52999 * 117.51708 * 167.83961 * 22 13 11 24 24 C 1.53002 * 117.49553 * 236.47092 * 22 13 11 25 25 H 1.08998 * 109.46711 * 300.00277 * 1 2 3 26 26 H 1.08998 * 109.47296 * 60.00088 * 1 2 3 27 27 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46987 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46923 * 300.00140 * 3 2 1 30 30 H 1.08989 * 109.47114 * 59.99787 * 3 2 1 31 31 H 1.08997 * 109.47103 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.46838 * 59.99933 * 4 2 1 33 33 H 1.09006 * 109.46742 * 179.97438 * 5 4 2 34 34 H 1.08997 * 109.47875 * 59.99724 * 5 4 2 35 35 H 1.09003 * 109.47342 * 300.00432 * 6 5 4 36 36 H 1.08996 * 109.47238 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47477 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.46297 * 60.00467 * 7 6 5 39 39 H 1.08999 * 109.47312 * 304.99907 * 10 8 7 40 40 H 1.09001 * 109.47290 * 184.99267 * 10 8 7 41 41 H 0.97003 * 120.00358 * 179.97438 * 17 16 14 42 42 H 1.08998 * 115.54756 * 22.14081 * 22 13 11 43 43 H 1.08998 * 117.49939 * 214.96976 * 23 22 13 44 44 H 1.08998 * 117.49712 * 359.97438 * 23 22 13 45 45 H 1.08990 * 117.49831 * 359.97183 * 24 22 13 46 46 H 1.08997 * 117.49503 * 144.99846 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7212 1.2493 10 6 1.5295 0.0002 2.4982 11 6 2.1301 -0.6350 3.7259 12 8 2.8917 -1.5721 3.6129 13 7 1.8215 -0.1609 4.9492 14 6 2.3674 -0.7391 6.0660 15 1 2.7157 -0.1196 6.8793 16 6 2.4726 -2.1220 6.1517 17 7 3.1807 -2.6687 7.1141 18 14 1.6071 -3.2038 4.8986 19 1 2.5590 -3.5698 3.8192 20 1 1.1160 -4.4369 5.5646 21 1 0.4584 -2.4648 4.3160 22 6 0.9020 0.9714 5.0856 23 6 0.3676 1.2835 6.4849 24 6 1.4058 2.2037 5.8396 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7209 -1.2495 32 1 1.6767 -0.2075 -2.1392 33 1 1.8930 -2.6775 -2.1394 34 1 0.4400 -2.1638 -1.2491 35 1 3.1300 -2.8851 0.0001 36 1 1.6769 -3.9127 -0.0001 37 1 1.8930 -2.6778 2.1393 38 1 0.4400 -2.1637 1.2493 39 1 0.4432 -0.0767 2.5438 40 1 1.8180 1.0505 2.4546 41 1 3.2538 -3.6341 7.1741 42 1 0.2314 1.1366 4.2424 43 1 -0.6545 1.6541 6.5622 44 1 0.6999 0.6460 7.3042 45 1 2.4212 2.1718 6.2344 46 1 1.0666 3.1796 5.4923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337365411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:16 Heat of formation + Delta-G solvation = -20.607397 kcal Electronic energy + Delta-G solvation = -24031.214449 eV Core-core repulsion = 20921.224119 eV Total energy + Delta-G solvation = -3109.990329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -40.15604 -38.67625 -36.45818 -33.29495 -33.01084 -31.89781 -31.31945 -27.90935 -27.23655 -25.88462 -24.33684 -22.05960 -21.76391 -21.26805 -20.69778 -19.26343 -17.88613 -17.14651 -16.12948 -15.54784 -14.91372 -14.74437 -14.69463 -14.17000 -14.00676 -13.74283 -13.42737 -13.01323 -12.97026 -12.61251 -12.44270 -12.32592 -11.78996 -11.61769 -11.48428 -11.34411 -11.18488 -11.12344 -11.04305 -10.91417 -10.78952 -10.43851 -10.26355 -10.00650 -9.95602 -9.82038 -9.68162 -9.63268 -9.58337 -8.54065 -8.20664 -7.45647 -6.11312 -3.96207 3.28071 3.52203 3.71713 3.92458 4.35479 4.53556 4.70129 4.77805 4.81714 4.87784 5.21127 5.25221 5.33629 5.41997 5.43293 5.48310 5.51813 5.58233 5.63805 5.67677 5.75108 5.76450 5.79882 5.87387 5.88863 6.01554 6.03567 6.05724 6.14384 6.16368 6.17034 6.23147 6.29305 6.34866 6.38827 6.48842 6.54002 6.62117 6.65712 6.86957 6.87504 6.96980 7.87298 7.97021 8.78365 8.92045 9.44989 9.81207 10.90477 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.007387 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.379017 B = 3789.739938 C = 4850.627238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.143 4.143 4 C -0.104 4.104 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.131 4.131 8 C -0.053 4.053 9 H 0.077 0.923 10 C -0.133 4.133 11 C 0.450 3.550 12 O -0.539 6.539 13 N -0.437 5.437 14 C -0.343 4.343 15 H 0.093 0.907 16 C 0.077 3.923 17 N -0.876 5.876 18 Si 0.953 3.047 19 H -0.255 1.255 20 H -0.329 1.329 21 H -0.292 1.292 22 C 0.066 3.934 23 C -0.176 4.176 24 C -0.197 4.197 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.271 0.729 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 7.019 -14.219 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.061 4.061 3 C -0.200 4.200 4 C -0.142 4.142 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.168 4.168 8 C -0.072 4.072 9 H 0.095 0.905 10 C -0.173 4.173 11 C 0.242 3.758 12 O -0.425 6.425 13 N -0.156 5.156 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.131 4.131 17 N -0.512 5.512 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.261 1.261 21 H -0.219 1.219 22 C -0.040 4.040 23 C -0.214 4.214 24 C -0.235 4.235 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.130 0.870 45 H 0.114 0.886 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.189 6.425 -14.156 16.732 hybrid contribution -0.471 -0.396 -0.353 0.710 sum -6.661 6.029 -14.509 17.065 Atomic orbital electron populations 1.22017 0.95085 1.02000 1.01173 1.20562 0.95473 0.94913 0.95199 1.21929 1.01081 0.95635 1.01399 1.21548 1.00508 0.95367 0.96772 1.21587 1.00708 0.95698 0.97730 1.21493 1.00884 0.98432 0.94558 1.21907 0.99721 0.95892 0.99306 1.20824 1.00799 0.94163 0.91440 0.90485 1.21792 1.00916 1.00673 0.93878 1.20377 0.84564 0.86521 0.84341 1.90339 1.38617 1.28524 1.85012 1.43220 1.38477 1.28409 1.05480 1.18754 1.40670 0.90720 0.96767 0.88921 1.25466 0.94025 0.97554 0.96030 1.69694 1.36691 1.11912 1.32876 0.85576 0.77963 0.77145 0.80257 1.18284 1.26146 1.21914 1.21756 0.96334 0.90198 0.95754 1.23175 0.97497 1.02961 0.97764 1.23252 1.00142 0.94195 1.05958 0.92568 0.93274 0.92079 0.92691 0.93150 0.92240 0.92098 0.92504 0.92726 0.92017 0.92079 0.92666 0.89239 0.92882 0.90475 0.89751 0.91901 0.87193 0.89518 0.87025 0.88645 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 7.43 37.16 0.28 -1.41 16 2 C -0.06 -0.77 0.54 -154.50 -0.08 -0.85 16 3 C -0.14 -1.62 8.13 37.16 0.30 -1.32 16 4 C -0.10 -1.21 4.73 -26.73 -0.13 -1.34 16 5 C -0.12 -1.43 5.65 -26.73 -0.15 -1.58 16 6 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 7 C -0.13 -2.29 4.67 -26.73 -0.12 -2.42 16 8 C -0.05 -0.87 1.14 -90.62 -0.10 -0.97 16 9 H 0.08 1.40 7.96 -51.93 -0.41 0.98 16 10 C -0.13 -2.31 2.96 -27.88 -0.08 -2.39 16 11 C 0.45 10.49 5.30 -10.98 -0.06 10.43 16 12 O -0.54 -14.43 9.01 5.55 0.05 -14.38 16 13 N -0.44 -10.45 2.60 -107.72 -0.28 -10.73 16 14 C -0.34 -9.66 8.32 -14.93 -0.12 -9.78 16 15 H 0.09 2.74 7.65 -52.49 -0.40 2.34 16 16 C 0.08 2.29 5.09 -17.47 -0.09 2.20 16 17 N -0.88 -27.15 13.96 55.50 0.77 -26.37 16 18 Si 0.95 25.88 22.88 -169.99 -3.89 21.99 16 19 H -0.26 -7.11 5.56 56.52 0.31 -6.79 16 20 H -0.33 -8.94 7.11 56.52 0.40 -8.54 16 21 H -0.29 -7.63 6.76 56.52 0.38 -7.25 16 22 C 0.07 1.23 6.06 -67.93 -0.41 0.82 16 23 C -0.18 -3.07 9.82 -26.73 -0.26 -3.33 16 24 C -0.20 -3.26 10.17 -26.73 -0.27 -3.53 16 25 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.67 6.32 -51.94 -0.33 0.34 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.95 3.80 -51.93 -0.20 1.75 16 38 H 0.05 0.88 6.43 -51.93 -0.33 0.54 16 39 H 0.08 1.25 6.15 -51.93 -0.32 0.94 16 40 H 0.08 1.31 6.14 -51.93 -0.32 0.99 16 41 H 0.27 7.96 8.31 -40.82 -0.34 7.63 16 42 H 0.11 1.74 6.71 -51.93 -0.35 1.39 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.11 2.26 6.96 -51.93 -0.36 1.90 16 45 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -32.07 327.57 -7.72 -39.79 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.84 Total: 2.12 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.47 Total: -17.35 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.49 Total: -37.10 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.05 Total: -14.38 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -3.89 Total: 21.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.07 -7.72 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337365411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.179 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds