Wall clock time and date at job start Tue Mar 31 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46981 * 2 1 4 4 C 1.52994 * 109.47261 * 120.00448 * 2 1 3 5 5 C 1.52998 * 109.47536 * 60.00162 * 4 2 1 6 6 C 1.52999 * 109.47316 * 59.99569 * 5 4 2 7 7 C 1.53004 * 109.47237 * 300.00592 * 6 5 4 8 8 C 1.53002 * 109.47044 * 240.00535 * 2 1 3 9 9 H 1.09004 * 109.46952 * 179.97438 * 8 2 1 10 10 C 1.53004 * 109.47229 * 59.99789 * 8 2 1 11 11 C 1.50695 * 109.46880 * 175.00190 * 10 8 2 12 12 O 1.21297 * 120.00456 * 359.97438 * 11 10 8 13 13 N 1.34778 * 120.00025 * 180.02562 * 11 10 8 14 14 C 1.37099 * 120.00096 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99411 * 224.28497 * 14 13 11 16 16 C 1.38942 * 120.00386 * 44.28914 * 14 13 11 17 17 N 1.31417 * 119.99995 * 18.22732 * 16 14 13 18 18 Si 1.86794 * 120.00318 * 198.22870 * 16 14 13 19 19 H 1.48495 * 109.47204 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47268 * 119.99789 * 18 16 14 21 21 H 1.48503 * 109.47161 * 239.99824 * 18 16 14 22 22 C 1.46497 * 119.99649 * 359.97438 * 13 11 10 23 23 C 1.53007 * 117.49814 * 183.22785 * 22 13 11 24 24 C 1.53007 * 117.49652 * 114.60628 * 22 13 11 25 25 H 1.08999 * 109.47206 * 299.99284 * 1 2 3 26 26 H 1.09000 * 109.47324 * 59.99773 * 1 2 3 27 27 H 1.09008 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46874 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47276 * 300.00256 * 3 2 1 30 30 H 1.08999 * 109.46566 * 60.00324 * 3 2 1 31 31 H 1.08996 * 109.47240 * 299.99729 * 4 2 1 32 32 H 1.09004 * 109.47267 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47666 * 180.02562 * 5 4 2 34 34 H 1.09004 * 109.46799 * 300.00234 * 5 4 2 35 35 H 1.09004 * 109.46643 * 60.00570 * 6 5 4 36 36 H 1.09001 * 109.47438 * 180.02562 * 6 5 4 37 37 H 1.08991 * 109.47031 * 299.99819 * 7 6 5 38 38 H 1.09002 * 109.46574 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.46658 * 294.99888 * 10 8 2 40 40 H 1.08992 * 109.46836 * 55.00028 * 10 8 2 41 41 H 0.97001 * 120.00149 * 174.93104 * 17 16 14 42 42 H 1.08997 * 115.55387 * 328.93454 * 22 13 11 43 43 H 1.08997 * 117.49642 * 359.97438 * 23 22 13 44 44 H 1.08993 * 117.49923 * 145.02524 * 23 22 13 45 45 H 1.09003 * 117.49891 * 214.97547 * 24 22 13 46 46 H 1.08996 * 117.49494 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5301 -2.1638 1.2491 6 6 2.0400 -2.8850 -0.0002 7 6 1.5299 -2.1637 -1.2494 8 6 2.0400 -0.7211 -1.2493 9 1 3.1300 -0.7207 -1.2495 10 6 1.5299 0.0002 -2.4985 11 6 2.1308 -0.6351 -3.7259 12 8 2.8924 -1.5723 -3.6126 13 7 1.8227 -0.1612 -4.9494 14 6 2.3689 -0.7395 -6.0660 15 1 2.7579 -0.1191 -6.8599 16 6 2.4219 -2.1235 -6.1764 17 7 1.6537 -2.8731 -5.4180 18 14 3.5850 -2.9189 -7.4027 19 1 4.3345 -1.8635 -8.1303 20 1 4.5407 -3.7969 -6.6808 21 1 2.8042 -3.7286 -8.3722 22 6 0.9032 0.9710 -5.0862 23 6 0.5340 1.4141 -6.5034 24 6 1.4683 2.2757 -5.6514 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -0.2076 2.1391 32 1 3.1300 -0.7209 1.2494 33 1 1.8931 -2.6776 2.1393 34 1 0.4401 -2.1638 1.2491 35 1 3.1300 -2.8850 -0.0002 36 1 1.6764 -3.9126 -0.0005 37 1 0.4400 -2.1637 -1.2494 38 1 1.8936 -2.6773 -2.1394 39 1 0.4436 -0.0768 -2.5444 40 1 1.8182 1.0504 -2.4548 41 1 1.6363 -3.8345 -5.5455 42 1 0.1334 1.0469 -4.3183 43 1 0.9757 0.8635 -7.3339 44 1 -0.4788 1.7816 -6.6680 45 1 1.0700 3.2100 -5.2556 46 1 2.5243 2.2916 -5.9210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337365412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:27 Heat of formation + Delta-G solvation = -26.024763 kcal Electronic energy + Delta-G solvation = -23815.031056 eV Core-core repulsion = 20704.805812 eV Total energy + Delta-G solvation = -3110.225244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 5.94 seconds Orbital eigenvalues (eV) -39.78698 -38.14232 -35.95933 -33.11956 -32.83859 -31.50170 -30.75634 -27.56631 -27.06537 -25.68722 -24.32727 -21.79688 -21.57664 -21.01639 -20.54889 -18.99538 -17.66630 -16.41086 -15.99182 -15.04771 -14.59882 -14.54391 -14.44661 -13.97450 -13.92795 -13.45897 -13.35982 -12.90378 -12.66963 -12.33927 -12.07101 -11.82099 -11.52664 -11.36067 -11.30081 -11.14475 -10.98796 -10.88126 -10.84939 -10.80552 -10.61377 -10.48822 -10.23024 -10.03333 -9.90828 -9.69918 -9.67018 -9.42863 -9.38549 -8.63880 -7.79114 -6.93236 -6.04742 -3.79116 3.32154 3.42055 3.43700 4.22574 4.33070 4.83365 4.85295 4.95086 4.98846 5.11539 5.34729 5.40356 5.52944 5.62732 5.63188 5.67447 5.72235 5.79628 5.82992 5.88927 5.94058 5.94612 5.99364 6.06600 6.12473 6.19409 6.23505 6.25856 6.28617 6.35135 6.39350 6.41500 6.50579 6.53723 6.57423 6.69059 6.73428 6.84531 6.85697 6.97261 7.11234 7.36006 7.68252 8.35270 9.15757 9.26567 9.76498 10.41874 11.04218 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.006431 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.973305 B = 4352.732735 C = 5456.236725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.143 4.143 4 C -0.104 4.104 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.050 4.050 9 H 0.070 0.930 10 C -0.131 4.131 11 C 0.486 3.514 12 O -0.530 6.530 13 N -0.433 5.433 14 C -0.347 4.347 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.833 5.833 18 Si 0.909 3.091 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.287 1.287 22 C 0.079 3.921 23 C -0.175 4.175 24 C -0.209 4.209 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.261 0.739 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 6.569 9.910 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.142 4.142 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.156 4.156 8 C -0.069 4.069 9 H 0.088 0.912 10 C -0.172 4.172 11 C 0.274 3.726 12 O -0.408 6.408 13 N -0.154 5.154 14 C -0.474 4.474 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.466 5.466 18 Si 0.736 3.264 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.213 1.213 22 C -0.028 4.028 23 C -0.213 4.213 24 C -0.248 4.248 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.910 5.854 10.069 12.005 hybrid contribution 0.322 -0.331 -0.676 0.819 sum -2.588 5.523 9.393 11.199 Atomic orbital electron populations 1.21998 0.95152 1.01988 1.00960 1.20568 0.95436 0.94757 0.95421 1.21929 1.00907 0.95905 1.01264 1.21542 1.00342 0.95453 0.96816 1.21590 1.00665 0.95661 0.97797 1.21508 1.00557 0.98411 0.94849 1.21729 0.99498 0.95453 0.98943 1.20778 1.00215 0.94517 0.91340 0.91198 1.21772 1.00886 0.99870 0.94644 1.19861 0.83839 0.85460 0.83427 1.90477 1.37174 1.27905 1.85213 1.42838 1.39192 1.28190 1.05222 1.18839 1.40140 0.89428 0.98981 0.90838 1.25194 0.95469 0.96876 0.95983 1.69834 1.34395 1.05308 1.37089 0.86210 0.81009 0.79314 0.79841 1.19733 1.20745 1.21329 1.21663 0.95608 0.88984 0.96527 1.23050 0.98804 1.03205 0.96246 1.23306 0.99680 0.95122 1.06734 0.93594 0.92558 0.92046 0.92884 0.92231 0.93377 0.92761 0.92300 0.93034 0.92094 0.92460 0.92874 0.93159 0.88417 0.90984 0.90896 0.92852 0.88197 0.87575 0.89942 0.89942 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.43 37.16 0.28 -1.58 16 2 C -0.06 -0.85 0.54 -154.51 -0.08 -0.93 16 3 C -0.14 -1.79 8.13 37.16 0.30 -1.49 16 4 C -0.10 -1.32 4.73 -26.74 -0.13 -1.45 16 5 C -0.12 -1.55 5.65 -26.73 -0.15 -1.70 16 6 C -0.12 -1.81 5.92 -26.73 -0.16 -1.97 16 7 C -0.12 -2.21 4.67 -26.73 -0.12 -2.34 16 8 C -0.05 -0.87 1.14 -90.61 -0.10 -0.97 16 9 H 0.07 1.37 7.95 -51.93 -0.41 0.95 16 10 C -0.13 -2.49 3.07 -27.88 -0.09 -2.58 16 11 C 0.49 12.05 6.68 -10.99 -0.07 11.97 16 12 O -0.53 -15.04 11.73 5.54 0.07 -14.97 16 13 N -0.43 -10.80 2.83 -107.73 -0.31 -11.11 16 14 C -0.35 -9.49 7.92 -14.94 -0.12 -9.61 16 15 H 0.07 1.97 7.26 -52.48 -0.38 1.59 16 16 C 0.08 2.11 4.38 -17.47 -0.08 2.03 16 17 N -0.83 -24.39 11.75 55.50 0.65 -23.74 16 18 Si 0.91 22.09 29.59 -169.99 -5.03 17.06 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.08 1.58 5.87 -67.92 -0.40 1.19 16 23 C -0.18 -3.21 9.80 -26.72 -0.26 -3.47 16 24 C -0.21 -3.62 10.36 -26.72 -0.28 -3.90 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.74 6.54 -51.93 -0.34 0.40 16 27 H 0.06 0.82 4.81 -51.92 -0.25 0.57 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.75 6.32 -51.93 -0.33 0.43 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.91 6.43 -51.93 -0.33 0.57 16 38 H 0.10 2.30 5.95 -51.93 -0.31 1.99 16 39 H 0.07 1.32 6.13 -51.93 -0.32 1.00 16 40 H 0.07 1.26 6.14 -51.93 -0.32 0.94 16 41 H 0.26 7.37 8.32 -40.82 -0.34 7.03 16 42 H 0.10 1.82 6.96 -51.93 -0.36 1.45 16 43 H 0.11 2.15 6.72 -51.93 -0.35 1.81 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -30.64 339.05 -8.79 -39.43 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.82 Total: 5.01 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -1.46 Total: -16.80 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.35 Total: -34.84 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.07 Total: -14.97 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.64 -8.79 -39.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337365412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.408 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.94 seconds