Wall clock time and date at job start Tue Mar 31 2020 02:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 C 1.52995 * 109.46952 * 119.99842 * 2 1 3 5 5 C 1.52999 * 109.47197 * 60.00527 * 4 2 1 6 6 C 1.52994 * 109.47650 * 59.99578 * 5 4 2 7 7 C 1.52991 * 109.47431 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47199 * 185.00173 * 7 6 5 9 9 O 1.21289 * 120.00398 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99916 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99904 * 179.97438 * 10 8 7 12 12 H 1.07992 * 120.00136 * 140.32870 * 11 10 8 13 13 C 1.38954 * 119.99884 * 320.32870 * 11 10 8 14 14 N 1.31408 * 120.00117 * 158.71931 * 13 11 10 15 15 Si 1.86803 * 120.00090 * 338.71128 * 13 11 10 16 16 H 1.48495 * 109.46821 * 93.66084 * 15 13 11 17 17 H 1.48495 * 109.47283 * 213.66473 * 15 13 11 18 18 H 1.48507 * 109.46917 * 333.66411 * 15 13 11 19 19 C 1.46494 * 120.00275 * 359.97438 * 10 8 7 20 20 C 1.53001 * 117.49968 * 182.26365 * 19 10 8 21 21 C 1.53007 * 117.50072 * 113.60185 * 19 10 8 22 22 C 1.53005 * 109.47209 * 300.00424 * 6 5 4 23 23 C 1.53002 * 109.47171 * 240.00167 * 2 1 3 24 24 H 1.08994 * 109.47406 * 300.00324 * 1 2 3 25 25 H 1.09001 * 109.46974 * 60.00282 * 1 2 3 26 26 H 1.08999 * 109.47260 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46766 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47007 * 299.99697 * 3 2 1 29 29 H 1.08998 * 109.47071 * 60.00048 * 3 2 1 30 30 H 1.08998 * 109.47401 * 300.00101 * 4 2 1 31 31 H 1.09000 * 109.47010 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.47084 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.46467 * 299.99559 * 5 4 2 34 34 H 1.09000 * 109.46773 * 60.00117 * 6 5 4 35 35 H 1.09002 * 109.47404 * 305.00648 * 7 6 5 36 36 H 1.09001 * 109.47292 * 65.00290 * 7 6 5 37 37 H 0.97000 * 120.00047 * 179.97438 * 14 13 11 38 38 H 1.09001 * 115.55056 * 327.93535 * 19 10 8 39 39 H 1.08990 * 117.49994 * 359.97438 * 20 19 10 40 40 H 1.09006 * 117.49559 * 145.02359 * 20 19 10 41 41 H 1.08999 * 117.49678 * 214.98040 * 21 19 10 42 42 H 1.08993 * 117.49625 * 359.97438 * 21 19 10 43 43 H 1.09001 * 109.47044 * 300.00102 * 22 6 5 44 44 H 1.08994 * 109.46974 * 179.97438 * 22 6 5 45 45 H 1.08991 * 109.47477 * 59.99919 * 23 2 1 46 46 H 1.09000 * 109.46915 * 179.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5296 -4.3273 -0.0003 8 6 2.1305 -5.0726 -1.1640 9 8 2.8917 -4.5058 -1.9193 10 7 1.8212 -6.3687 -1.3663 11 6 2.3674 -7.0466 -2.4254 12 1 2.6872 -8.0709 -2.3038 13 6 2.5096 -6.4157 -3.6552 14 7 3.3781 -6.8703 -4.5304 15 14 1.4660 -4.9214 -4.0646 16 1 2.2106 -3.6861 -3.7119 17 1 1.1577 -4.9159 -5.5172 18 1 0.2001 -4.9746 -3.2901 19 6 0.9013 -7.0532 -0.4545 20 6 0.6314 -8.5380 -0.7064 21 6 -0.4496 -7.4997 -1.0174 22 6 1.5300 -2.1638 -1.2493 23 6 2.0400 -0.7212 -1.2493 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -0.2074 2.1392 31 1 3.1299 -0.7208 1.2495 32 1 1.8930 -2.6774 2.1395 33 1 0.4400 -2.1637 1.2492 34 1 3.1300 -2.8850 0.0001 35 1 1.8175 -4.8148 0.9312 36 1 0.4433 -4.3282 -0.0901 37 1 3.4770 -6.4301 -5.3891 38 1 0.9279 -6.7152 0.5814 39 1 1.1379 -9.0054 -1.5507 40 1 0.4800 -9.1767 0.1639 41 1 -1.3115 -7.4557 -0.3516 42 1 -0.6540 -7.2837 -2.0660 43 1 0.4400 -2.1637 -1.2493 44 1 1.8937 -2.6774 -2.1392 45 1 1.6767 -0.2075 -2.1392 46 1 3.1300 -0.7208 -1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337371957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:04 Heat of formation + Delta-G solvation = -24.186339 kcal Electronic energy + Delta-G solvation = -23610.024963 eV Core-core repulsion = 20499.879439 eV Total energy + Delta-G solvation = -3110.145524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83290 -38.70019 -36.43963 -33.99528 -32.76341 -31.42629 -30.53370 -28.99721 -27.31332 -25.57068 -23.70704 -22.50218 -21.92934 -21.35770 -20.37640 -18.93669 -18.28419 -16.85134 -16.12900 -15.42292 -15.20740 -14.69089 -14.34907 -14.19780 -13.92175 -13.83941 -13.37316 -13.07167 -12.97892 -12.56257 -12.46223 -12.13706 -11.81804 -11.74458 -11.67239 -11.29997 -11.18830 -11.13432 -11.01494 -10.73016 -10.65657 -10.52571 -10.30977 -10.03137 -9.97806 -9.85271 -9.79101 -9.62921 -9.58303 -8.45188 -8.25719 -7.44294 -6.15551 -3.88943 3.33648 3.50434 3.67216 3.85092 4.38078 4.51665 4.67409 4.75991 4.80804 4.87613 5.13727 5.26507 5.30267 5.40975 5.48181 5.51649 5.57189 5.61414 5.65503 5.67770 5.73423 5.79698 5.81973 5.83872 5.90357 5.97237 6.03122 6.06884 6.10328 6.13692 6.17086 6.21184 6.30136 6.36203 6.38535 6.48581 6.53389 6.63041 6.70445 6.86027 6.89977 7.02126 7.88556 8.01741 8.83166 8.98475 9.48445 9.89194 10.89201 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.006026 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.237516 B = 4645.513366 C = 5366.178273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.104 4.104 5 C -0.116 4.116 6 C -0.065 4.065 7 C -0.130 4.130 8 C 0.450 3.550 9 O -0.538 6.538 10 N -0.438 5.438 11 C -0.351 4.351 12 H 0.094 0.906 13 C 0.092 3.908 14 N -0.867 5.867 15 Si 0.910 3.090 16 H -0.243 1.243 17 H -0.315 1.315 18 H -0.282 1.282 19 C 0.066 3.934 20 C -0.174 4.174 21 C -0.200 4.200 22 C -0.131 4.131 23 C -0.104 4.104 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.271 0.729 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.055 0.945 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 10.169 11.724 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.084 4.084 7 C -0.170 4.170 8 C 0.241 3.759 9 O -0.420 6.420 10 N -0.159 5.159 11 C -0.477 4.477 12 H 0.112 0.888 13 C -0.117 4.117 14 N -0.502 5.502 15 Si 0.741 3.259 16 H -0.169 1.169 17 H -0.245 1.245 18 H -0.208 1.208 19 C -0.040 4.040 20 C -0.211 4.211 21 C -0.239 4.239 22 C -0.168 4.168 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.073 0.927 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.646 10.445 11.174 16.677 hybrid contribution -0.640 0.482 -0.275 0.847 sum -7.286 10.927 10.899 17.067 Atomic orbital electron populations 1.21957 0.95021 1.02138 1.00904 1.20563 0.95509 0.94673 0.95938 1.21864 1.00886 0.95801 1.01188 1.21540 1.00512 0.95469 0.96633 1.21657 1.00705 0.95227 0.97762 1.20825 1.01033 0.92406 0.94162 1.21662 1.01018 0.96073 0.98270 1.20268 0.84661 0.83396 0.87613 1.90503 1.37852 1.66324 1.47362 1.43204 1.38492 1.09058 1.25139 1.18744 1.41243 0.99795 0.87877 0.88846 1.25275 0.94217 0.97365 0.94796 1.69765 1.30385 1.41743 1.08258 0.86523 0.79419 0.85369 0.74542 1.16911 1.24495 1.20776 1.21798 0.92558 0.95648 0.94009 1.23127 1.02770 0.91645 1.03591 1.23275 0.92593 1.05574 1.02481 1.21926 0.99630 0.94989 1.00262 1.21547 1.00602 0.95831 0.96139 0.93269 0.93127 0.91821 0.92819 0.92944 0.93080 0.92547 0.92101 0.92359 0.91972 0.90568 0.90382 0.90601 0.91933 0.87230 0.87185 0.89516 0.89615 0.88710 0.92982 0.88899 0.92664 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.78 37.16 0.29 -1.32 16 2 C -0.07 -0.80 0.77 -154.51 -0.12 -0.92 16 3 C -0.14 -1.46 8.47 37.16 0.31 -1.14 16 4 C -0.10 -1.21 4.73 -26.73 -0.13 -1.34 16 5 C -0.12 -1.46 4.93 -26.73 -0.13 -1.59 16 6 C -0.07 -1.06 1.84 -90.62 -0.17 -1.23 16 7 C -0.13 -2.27 3.81 -27.89 -0.11 -2.38 16 8 C 0.45 10.49 5.64 -10.98 -0.06 10.43 16 9 O -0.54 -14.41 9.46 5.55 0.05 -14.36 16 10 N -0.44 -10.48 2.54 -107.73 -0.27 -10.76 16 11 C -0.35 -9.86 8.74 -14.93 -0.13 -9.99 16 12 H 0.09 2.75 6.95 -52.49 -0.36 2.38 16 13 C 0.09 2.73 4.81 -17.47 -0.08 2.65 16 14 N -0.87 -26.73 13.96 55.50 0.77 -25.96 16 15 Si 0.91 24.31 24.28 -169.99 -4.13 20.18 16 16 H -0.24 -6.58 4.85 56.52 0.27 -6.31 16 17 H -0.31 -8.42 7.11 56.52 0.40 -8.01 16 18 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 19 C 0.07 1.24 5.85 -67.93 -0.40 0.84 16 20 C -0.17 -3.01 9.80 -26.69 -0.26 -3.27 16 21 C -0.20 -3.45 10.38 -26.69 -0.28 -3.72 16 22 C -0.13 -2.28 4.67 -26.73 -0.12 -2.40 16 23 C -0.10 -1.53 4.73 -26.73 -0.13 -1.65 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.08 1.38 7.96 -51.93 -0.41 0.96 16 35 H 0.08 1.19 7.57 -51.93 -0.39 0.80 16 36 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 37 H 0.27 7.91 8.31 -40.82 -0.34 7.58 16 38 H 0.11 1.71 6.99 -51.93 -0.36 1.35 16 39 H 0.11 2.19 6.49 -51.93 -0.34 1.85 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.05 0.86 6.43 -51.93 -0.33 0.52 16 44 H 0.09 2.02 4.01 -51.93 -0.21 1.81 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -31.81 336.12 -8.19 -40.00 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.18 Total: 2.87 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.51 Total: -17.04 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.50 Total: -36.72 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.05 Total: -14.36 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.13 Total: 20.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.81 -8.19 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337371957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.815 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds