Wall clock time and date at job start Tue Mar 31 2020 01:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48505 * 109.46817 * 240.27452 * 3 2 1 5 5 H 1.48498 * 109.47371 * 0.27163 * 3 2 1 6 6 H 1.48500 * 109.47200 * 120.27434 * 3 2 1 7 7 C 1.37871 * 119.99493 * 180.26914 * 2 1 3 8 8 H 1.08005 * 119.99455 * 179.72109 * 7 2 1 9 9 C 1.50698 * 120.00457 * 359.72895 * 7 2 1 10 10 C 1.53003 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46691 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00314 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99427 * 180.02562 * 11 10 9 14 14 C 1.47421 * 125.65285 * 355.08548 * 13 11 10 15 15 C 1.54905 * 104.83343 * 155.83810 * 14 13 11 16 16 C 1.55158 * 101.58347 * 37.01354 * 15 14 13 17 17 C 1.47023 * 125.64668 * 174.78292 * 13 11 10 18 18 H 1.09003 * 109.88126 * 300.51030 * 17 13 11 19 19 C 1.52999 * 109.88250 * 61.67167 * 17 13 11 20 20 C 1.52999 * 109.47032 * 177.72470 * 19 17 13 21 21 C 1.53007 * 109.46865 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.47170 * 60.00297 * 21 20 19 23 23 C 1.52999 * 109.46984 * 299.99630 * 22 21 20 24 24 C 1.53001 * 109.46938 * 57.72806 * 19 17 13 25 25 H 0.97004 * 119.99720 * 359.72218 * 1 2 3 26 26 H 1.08997 * 109.47084 * 300.00049 * 9 7 2 27 27 H 1.09008 * 109.46988 * 59.99492 * 9 7 2 28 28 H 1.08989 * 109.47276 * 299.99888 * 10 9 7 29 29 H 1.09001 * 109.46600 * 60.00668 * 10 9 7 30 30 H 1.09007 * 110.36816 * 274.67784 * 14 13 11 31 31 H 1.09002 * 110.36916 * 36.88607 * 14 13 11 32 32 H 1.09003 * 111.00540 * 155.08476 * 15 14 13 33 33 H 1.08996 * 111.00706 * 278.93426 * 15 14 13 34 34 H 1.08995 * 110.72077 * 82.85582 * 16 15 14 35 35 H 1.08996 * 110.71575 * 205.95927 * 16 15 14 36 36 H 1.09000 * 109.47381 * 297.72756 * 19 17 13 37 37 H 1.09000 * 109.47196 * 299.99804 * 20 19 17 38 38 H 1.09001 * 109.47297 * 60.00759 * 20 19 17 39 39 H 1.08990 * 109.46999 * 299.99758 * 21 20 19 40 40 H 1.09005 * 109.46870 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.46805 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47125 * 59.99730 * 22 21 20 43 43 H 1.09000 * 109.47196 * 300.00560 * 23 22 21 44 44 H 1.08997 * 109.46891 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.46874 * 299.99407 * 24 19 17 46 46 H 1.09000 * 109.47612 * 59.99999 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6992 -1.2159 5 1 1.2842 2.7464 0.0066 6 1 3.1079 1.6935 1.2091 7 6 2.0045 -1.1940 -0.0056 8 1 3.0845 -1.1940 -0.0102 9 6 1.2510 -2.4991 -0.0056 10 6 2.2452 -3.6621 -0.0130 11 6 1.4916 -4.9671 -0.0123 12 8 0.2787 -4.9671 -0.0069 13 7 2.1655 -6.1343 -0.0177 14 6 3.6282 -6.2815 -0.1271 15 6 3.9382 -7.6544 0.5200 16 6 2.7173 -8.4964 0.0641 17 6 1.5640 -7.4715 0.0909 18 1 1.0129 -7.5551 1.0276 19 6 0.6254 -7.7175 -1.0921 20 6 0.0488 -9.1317 -1.0001 21 6 -0.8893 -9.3779 -2.1835 22 6 -0.1100 -9.2289 -3.4917 23 6 0.4666 -7.8147 -3.5837 24 6 1.4042 -7.5684 -2.4006 25 1 -0.4850 0.8401 0.0041 26 1 0.6280 -2.5589 0.8868 27 1 0.6206 -2.5547 -0.8931 28 1 2.8678 -3.6021 -0.9055 29 1 2.8757 -3.6066 0.8744 30 1 3.9326 -6.2781 -1.1738 31 1 4.1317 -5.4818 0.4162 32 1 4.8671 -8.0698 0.1292 33 1 3.9743 -7.5750 1.6065 34 1 2.8705 -8.8838 -0.9431 35 1 2.5271 -9.3100 0.7641 36 1 -0.1873 -6.9915 -1.0682 37 1 0.8615 -9.8577 -1.0241 38 1 -0.5061 -9.2380 -0.0680 39 1 -1.7020 -8.6520 -2.1600 40 1 -1.2997 -10.3856 -2.1182 41 1 -0.7783 -9.4048 -4.3347 42 1 0.7027 -9.9549 -3.5152 43 1 -0.3462 -7.0888 -3.5601 44 1 1.0221 -7.7088 -4.5154 45 1 1.8149 -6.5609 -2.4661 46 1 2.2169 -8.2943 -2.4245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360020621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:11 Heat of formation + Delta-G solvation = -73.074895 kcal Electronic energy + Delta-G solvation = -22922.066643 eV Core-core repulsion = 19809.801152 eV Total energy + Delta-G solvation = -3112.265491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.39199 -38.16272 -36.73192 -33.45110 -32.14033 -31.33252 -30.78275 -30.51292 -27.45458 -25.78969 -23.65135 -22.63827 -22.14809 -21.66608 -20.51821 -19.10874 -18.24773 -16.88107 -16.36006 -15.81547 -15.18528 -14.72948 -14.60545 -14.40674 -14.22944 -14.12964 -13.76360 -13.30111 -12.90863 -12.76639 -12.32919 -12.19006 -12.15548 -11.90516 -11.74944 -11.68182 -11.36690 -11.17302 -11.04256 -10.89551 -10.82978 -10.78996 -10.59128 -10.22786 -10.08646 -9.97923 -9.90397 -9.59522 -9.12178 -8.90761 -8.31696 -8.23878 -5.93502 -3.97861 3.30383 3.35805 3.35996 3.40717 3.43030 4.46032 4.50690 4.55271 4.69243 4.75785 4.78001 4.89862 5.19291 5.23856 5.28731 5.35173 5.41243 5.43811 5.50093 5.52471 5.53491 5.61826 5.64691 5.71969 5.72330 5.79020 5.92468 5.96426 5.99068 6.11415 6.16329 6.19625 6.23690 6.27402 6.29598 6.31011 6.41828 6.55989 6.77287 6.95993 7.76826 7.89856 7.96942 8.10367 8.41760 8.83916 9.10595 9.65414 11.17432 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.004058 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.615665 B = 6898.256989 C = 7563.065875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.125 4.125 11 C 0.526 3.474 12 O -0.530 6.530 13 N -0.625 5.625 14 C 0.102 3.898 15 C -0.134 4.134 16 C -0.131 4.131 17 C 0.143 3.857 18 H 0.069 0.931 19 C -0.099 4.099 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.107 4.107 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -21.765 -3.157 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.165 4.165 11 C 0.317 3.683 12 O -0.406 6.406 13 N -0.361 5.361 14 C -0.022 4.022 15 C -0.172 4.172 16 C -0.169 4.169 17 C 0.039 3.961 18 H 0.087 0.913 19 C -0.119 4.119 20 C -0.148 4.148 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.524 -21.529 -3.154 22.449 hybrid contribution 0.530 0.951 0.022 1.089 sum 6.054 -20.579 -3.132 21.678 Atomic orbital electron populations 1.69994 1.06047 1.26646 1.50165 1.25016 0.94812 0.99166 0.95322 0.86661 0.79556 0.83229 0.78532 1.20258 1.21282 1.20261 1.21183 0.92858 0.91049 1.51432 0.92724 1.18891 0.93162 0.89347 0.98543 1.21846 1.00630 0.91837 1.02158 1.21250 0.88137 0.84403 0.74480 1.90652 1.14230 1.86940 1.48729 1.48757 1.07024 1.05310 1.75035 1.22244 0.81685 0.97742 1.00494 1.22773 0.98222 0.95096 1.01097 1.22794 0.94337 0.97363 1.02390 1.21493 0.94003 0.82526 0.98077 0.91341 1.21507 0.98766 0.97433 0.94166 1.21540 0.98770 0.96406 0.98091 1.21518 0.98342 1.01089 0.94709 1.21515 0.99389 0.97175 0.97321 1.21530 0.99444 0.96830 0.98038 1.21519 0.97590 1.01554 0.93793 0.92924 0.95897 0.95873 0.90546 0.90471 0.91746 0.90406 0.90223 0.90754 0.90084 0.90628 0.89331 0.92083 0.92177 0.91909 0.92367 0.92452 0.92360 0.91887 0.92374 0.91947 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 10 C -0.12 -2.64 4.57 -27.88 -0.13 -2.76 16 11 C 0.53 10.58 7.67 -10.98 -0.08 10.50 16 12 O -0.53 -12.76 14.87 5.55 0.08 -12.68 16 13 N -0.62 -9.45 2.23 -163.02 -0.36 -9.81 16 14 C 0.10 1.16 6.74 -2.53 -0.02 1.14 16 15 C -0.13 -1.16 7.08 -24.58 -0.17 -1.34 16 16 C -0.13 -1.20 5.17 -24.90 -0.13 -1.33 16 17 C 0.14 1.85 2.72 -66.96 -0.18 1.66 16 18 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.10 -1.30 1.91 -90.62 -0.17 -1.47 16 20 C -0.11 -1.15 4.97 -26.73 -0.13 -1.28 16 21 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 22 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 23 C -0.12 -1.39 5.92 -26.75 -0.16 -1.55 16 24 C -0.11 -1.30 4.78 -26.75 -0.13 -1.43 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 28 H 0.08 1.49 8.14 -51.94 -0.42 1.07 16 29 H 0.08 1.51 7.95 -51.93 -0.41 1.10 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.88 7.47 -51.93 -0.39 0.49 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.69 5.49 -51.93 -0.29 0.41 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.52 6.76 -51.93 -0.35 1.17 16 37 H 0.06 0.55 7.05 -51.93 -0.37 0.18 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.90 7.56 -51.93 -0.39 0.51 16 46 H 0.06 0.62 6.08 -51.93 -0.32 0.30 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -33.17 349.88 -9.83 -43.01 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -8.39 Total: -2.20 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.15 Total: -13.43 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.37 Total: -36.83 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.17 -9.83 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360020621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.068 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds