Wall clock time and date at job start Tue Mar 31 2020 01:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48498 * 109.47308 * 269.99828 * 3 2 1 5 5 H 1.48497 * 109.47110 * 30.00169 * 3 2 1 6 6 H 1.48506 * 109.46882 * 149.99978 * 3 2 1 7 7 C 1.37880 * 119.99428 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00529 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99499 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47083 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00039 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99724 * 359.97438 * 13 11 10 15 15 C 1.53001 * 109.47572 * 270.00301 * 14 13 11 16 16 C 1.52998 * 117.49840 * 243.74693 * 15 14 13 17 17 C 1.53002 * 117.49851 * 175.08693 * 15 14 13 18 18 C 1.46500 * 120.00188 * 180.02562 * 13 11 10 19 19 C 1.53006 * 109.46998 * 59.99746 * 18 13 11 20 20 C 1.52999 * 109.46626 * 179.97438 * 19 18 13 21 21 C 1.52997 * 109.46991 * 60.00378 * 20 19 18 22 22 C 1.52996 * 109.47131 * 299.99311 * 21 20 19 23 23 C 1.52997 * 109.47007 * 299.99886 * 18 13 11 24 24 H 0.96999 * 119.99705 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47835 * 59.99891 * 9 7 2 26 26 H 1.09004 * 109.46818 * 299.99397 * 9 7 2 27 27 H 1.09002 * 109.47398 * 59.99727 * 10 9 7 28 28 H 1.09000 * 109.46968 * 299.99709 * 10 9 7 29 29 H 1.09000 * 109.46862 * 30.00423 * 14 13 11 30 30 H 1.09001 * 109.47170 * 150.00214 * 14 13 11 31 31 H 1.09002 * 115.54625 * 29.41561 * 15 14 13 32 32 H 1.08998 * 117.50008 * 0.02562 * 16 15 14 33 33 H 1.09000 * 117.49751 * 145.01711 * 16 15 14 34 34 H 1.09002 * 117.49787 * 214.97710 * 17 15 14 35 35 H 1.08995 * 117.50011 * 0.02562 * 17 15 14 36 36 H 1.09001 * 109.47297 * 179.97438 * 18 13 11 37 37 H 1.08993 * 109.46955 * 300.00226 * 19 18 13 38 38 H 1.09000 * 109.47050 * 60.00054 * 19 18 13 39 39 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47839 * 299.99931 * 20 19 18 41 41 H 1.09001 * 109.47289 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47611 * 59.99933 * 21 20 19 43 43 H 1.08996 * 109.47452 * 300.00000 * 22 21 20 44 44 H 1.09000 * 109.47054 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.47153 * 299.99911 * 23 18 13 46 46 H 1.08996 * 109.46952 * 60.00083 * 23 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5283 -2.6368 0.0009 12 8 6.1348 -1.5864 0.0005 13 7 6.2022 -3.8040 0.0014 14 6 5.4697 -5.0727 0.0024 15 6 5.2152 -5.5135 1.4453 16 6 5.8686 -6.8159 1.9117 17 6 4.3594 -6.7632 1.6616 18 6 7.6673 -3.8040 0.0019 19 6 8.1768 -3.0825 1.2512 20 6 9.7068 -3.0832 1.2520 21 6 10.2177 -2.3625 0.0028 22 6 9.7082 -3.0840 -1.2464 23 6 8.1777 -3.0830 -1.2473 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6802 0.8910 26 1 3.8751 -0.6806 -0.8889 27 1 3.6583 -3.1504 -0.8892 28 1 3.6577 -3.1507 0.8908 29 1 4.5171 -4.9425 -0.5112 30 1 6.0585 -5.8327 -0.5112 31 1 5.1226 -4.7078 2.1736 32 1 6.4802 -7.3585 1.1908 33 1 6.2056 -6.8673 2.9470 34 1 3.7041 -6.7799 2.5325 35 1 3.9780 -7.2715 0.7760 36 1 8.0306 -4.8317 0.0026 37 1 7.8135 -2.0549 1.2509 38 1 7.8131 -3.5962 2.1412 39 1 10.0698 -2.5696 2.1422 40 1 10.0698 -4.1109 1.2525 41 1 11.3077 -2.3626 0.0036 42 1 9.8548 -1.3347 0.0023 43 1 10.0711 -4.1117 -1.2460 44 1 10.0725 -2.5708 -2.1364 45 1 7.8146 -3.5970 -2.1373 46 1 7.8144 -2.0554 -1.2476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361726504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:27 Heat of formation + Delta-G solvation = -39.767678 kcal Electronic energy + Delta-G solvation = -22906.782341 eV Core-core repulsion = 19795.961159 eV Total energy + Delta-G solvation = -3110.821182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.25457 -37.62582 -37.43596 -34.42391 -33.47308 -31.40643 -30.73071 -29.77262 -26.78022 -25.82490 -22.88410 -22.60778 -22.41023 -21.11322 -20.60363 -19.83983 -18.47363 -17.04586 -16.43866 -15.98890 -15.36690 -14.98678 -14.77555 -14.28018 -14.12817 -13.99658 -13.89215 -13.33115 -13.01893 -12.74676 -12.58274 -12.43360 -12.23711 -12.10760 -11.75679 -11.60602 -11.44559 -11.25216 -11.06047 -10.88964 -10.73916 -10.53180 -10.34638 -10.19096 -10.08473 -10.01075 -9.90445 -9.72598 -9.15460 -8.90725 -8.49205 -8.40087 -6.00908 -3.99094 3.12357 3.20389 3.39085 3.45624 3.56712 3.73492 4.52800 4.59539 4.67716 4.78811 4.80340 4.87434 4.92081 5.05825 5.22404 5.26930 5.34798 5.38039 5.46428 5.48418 5.52292 5.53234 5.54387 5.59509 5.64415 5.74591 5.80781 5.97074 6.00781 6.01336 6.07321 6.14898 6.16775 6.17826 6.22431 6.30136 6.43336 6.48816 6.74247 6.92304 7.40054 7.47219 7.71803 7.83351 8.52951 8.70926 9.02710 9.62553 11.12055 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.005378 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.570848 B = 5205.448797 C = 6676.397288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.122 4.122 11 C 0.514 3.486 12 O -0.533 6.533 13 N -0.618 5.618 14 C 0.142 3.858 15 C -0.169 4.169 16 C -0.181 4.181 17 C -0.173 4.173 18 C 0.158 3.842 19 C -0.136 4.136 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.138 4.138 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.250 -13.816 1.056 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.162 4.162 11 C 0.304 3.696 12 O -0.409 6.409 13 N -0.351 5.351 14 C 0.019 3.981 15 C -0.188 4.188 16 C -0.218 4.218 17 C -0.211 4.211 18 C 0.055 3.945 19 C -0.175 4.175 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.177 4.177 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.410 -13.119 1.045 22.630 hybrid contribution 0.262 0.676 0.081 0.730 sum 18.672 -12.443 1.126 22.466 Atomic orbital electron populations 1.69913 1.06287 1.26901 1.51240 1.24964 0.94682 0.99168 0.94391 0.86810 0.80643 0.83474 0.78716 1.20281 1.21495 1.18539 1.21119 0.89332 0.94491 1.51110 0.90990 1.19361 0.96347 0.90332 0.97509 1.21710 0.88469 1.02963 1.03010 1.21459 0.91409 0.82465 0.74227 1.90580 1.70455 1.31202 1.48658 1.48206 1.05783 1.06077 1.75081 1.21148 0.97585 0.85394 0.94020 1.22875 1.04954 0.92144 0.98859 1.23020 0.95759 1.00939 1.02110 1.22942 0.93426 1.01153 1.03566 1.20923 0.79365 0.99004 0.95190 1.21961 0.95064 1.03459 0.96980 1.21458 0.95553 1.00172 0.97849 1.21546 0.99555 1.00103 0.94631 1.21464 0.95469 1.00186 0.97894 1.21997 0.95151 1.03601 0.96924 0.92771 0.95942 0.96395 0.89921 0.89723 0.89253 0.90754 0.87393 0.89019 0.89149 0.88628 0.88588 0.90588 0.89405 0.92353 0.92109 0.92473 0.92420 0.91633 0.92470 0.92065 0.92414 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 10 C -0.12 -2.40 4.19 -27.88 -0.12 -2.52 16 11 C 0.51 9.38 7.10 -10.98 -0.08 9.30 16 12 O -0.53 -11.36 12.19 5.55 0.07 -11.29 16 13 N -0.62 -8.64 2.42 -166.11 -0.40 -9.04 16 14 C 0.14 1.60 5.46 -4.04 -0.02 1.58 16 15 C -0.17 -1.84 5.94 -90.62 -0.54 -2.38 16 16 C -0.18 -1.61 10.18 -26.69 -0.27 -1.89 16 17 C -0.17 -1.64 10.25 -26.69 -0.27 -1.91 16 18 C 0.16 1.98 2.54 -67.93 -0.17 1.81 16 19 C -0.14 -1.77 5.13 -26.73 -0.14 -1.91 16 20 C -0.11 -1.17 5.92 -26.73 -0.16 -1.33 16 21 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 22 C -0.11 -1.16 5.92 -26.71 -0.16 -1.32 16 23 C -0.14 -1.78 5.13 -26.71 -0.14 -1.92 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 26 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 27 H 0.08 1.53 7.40 -51.93 -0.38 1.14 16 28 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 29 H 0.09 1.03 6.44 -51.93 -0.33 0.70 16 30 H 0.07 0.68 7.65 -51.93 -0.40 0.29 16 31 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.81 7.80 -51.93 -0.40 0.41 16 37 H 0.09 1.44 6.17 -51.93 -0.32 1.12 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.44 6.17 -51.93 -0.32 1.12 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -32.16 355.33 -10.04 -42.20 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.42 Total: -0.58 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.75 Total: -17.34 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.37 Total: -36.45 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.29 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.16 -10.04 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361726504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.435 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds