Wall clock time and date at job start Tue Mar 31 2020 01:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48498 * 109.47308 * 269.99828 * 3 2 1 5 5 H 1.48497 * 109.47110 * 30.00169 * 3 2 1 6 6 H 1.48506 * 109.46882 * 149.99978 * 3 2 1 7 7 C 1.37880 * 119.99428 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00529 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99499 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47083 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00039 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99724 * 359.97438 * 13 11 10 15 15 C 1.53001 * 109.47572 * 270.00301 * 14 13 11 16 16 C 1.52998 * 117.49840 * 243.74693 * 15 14 13 17 17 C 1.53002 * 117.49851 * 175.08693 * 15 14 13 18 18 C 1.46500 * 120.00188 * 180.02562 * 13 11 10 19 19 C 1.53006 * 109.46998 * 59.99746 * 18 13 11 20 20 C 1.52999 * 109.46626 * 179.97438 * 19 18 13 21 21 C 1.52997 * 109.46991 * 60.00378 * 20 19 18 22 22 C 1.52996 * 109.47131 * 299.99311 * 21 20 19 23 23 C 1.52997 * 109.47007 * 299.99886 * 18 13 11 24 24 H 0.96999 * 119.99705 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47835 * 59.99891 * 9 7 2 26 26 H 1.09004 * 109.46818 * 299.99397 * 9 7 2 27 27 H 1.09002 * 109.47398 * 59.99727 * 10 9 7 28 28 H 1.09000 * 109.46968 * 299.99709 * 10 9 7 29 29 H 1.09000 * 109.46862 * 30.00423 * 14 13 11 30 30 H 1.09001 * 109.47170 * 150.00214 * 14 13 11 31 31 H 1.09002 * 115.54625 * 29.41561 * 15 14 13 32 32 H 1.08998 * 117.50008 * 0.02562 * 16 15 14 33 33 H 1.09000 * 117.49751 * 145.01711 * 16 15 14 34 34 H 1.09002 * 117.49787 * 214.97710 * 17 15 14 35 35 H 1.08995 * 117.50011 * 0.02562 * 17 15 14 36 36 H 1.09001 * 109.47297 * 179.97438 * 18 13 11 37 37 H 1.08993 * 109.46955 * 300.00226 * 19 18 13 38 38 H 1.09000 * 109.47050 * 60.00054 * 19 18 13 39 39 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47839 * 299.99931 * 20 19 18 41 41 H 1.09001 * 109.47289 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47611 * 59.99933 * 21 20 19 43 43 H 1.08996 * 109.47452 * 300.00000 * 22 21 20 44 44 H 1.09000 * 109.47054 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.47153 * 299.99911 * 23 18 13 46 46 H 1.08996 * 109.46952 * 60.00083 * 23 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5283 -2.6368 0.0009 12 8 6.1348 -1.5864 0.0005 13 7 6.2022 -3.8040 0.0014 14 6 5.4697 -5.0727 0.0024 15 6 5.2152 -5.5135 1.4453 16 6 5.8686 -6.8159 1.9117 17 6 4.3594 -6.7632 1.6616 18 6 7.6673 -3.8040 0.0019 19 6 8.1768 -3.0825 1.2512 20 6 9.7068 -3.0832 1.2520 21 6 10.2177 -2.3625 0.0028 22 6 9.7082 -3.0840 -1.2464 23 6 8.1777 -3.0830 -1.2473 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6802 0.8910 26 1 3.8751 -0.6806 -0.8889 27 1 3.6583 -3.1504 -0.8892 28 1 3.6577 -3.1507 0.8908 29 1 4.5171 -4.9425 -0.5112 30 1 6.0585 -5.8327 -0.5112 31 1 5.1226 -4.7078 2.1736 32 1 6.4802 -7.3585 1.1908 33 1 6.2056 -6.8673 2.9470 34 1 3.7041 -6.7799 2.5325 35 1 3.9780 -7.2715 0.7760 36 1 8.0306 -4.8317 0.0026 37 1 7.8135 -2.0549 1.2509 38 1 7.8131 -3.5962 2.1412 39 1 10.0698 -2.5696 2.1422 40 1 10.0698 -4.1109 1.2525 41 1 11.3077 -2.3626 0.0036 42 1 9.8548 -1.3347 0.0023 43 1 10.0711 -4.1117 -1.2460 44 1 10.0725 -2.5708 -2.1364 45 1 7.8146 -3.5970 -2.1373 46 1 7.8144 -2.0554 -1.2476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361726504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:26 Heat of formation + Delta-G solvation = -56.804873 kcal Electronic energy + Delta-G solvation = -22907.521129 eV Core-core repulsion = 19795.961159 eV Total energy + Delta-G solvation = -3111.559970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47769 -38.69616 -38.37928 -35.58372 -35.51116 -33.36406 -31.64774 -30.91188 -28.22806 -27.27883 -24.25439 -23.52119 -23.13611 -22.44678 -21.85284 -20.78779 -19.90616 -18.96066 -17.51868 -17.47133 -16.61724 -16.29881 -15.92092 -15.75047 -15.33820 -14.96863 -14.91159 -14.81935 -14.56151 -14.39757 -13.69605 -13.55324 -13.44236 -13.31436 -13.08341 -12.91205 -12.61947 -12.32845 -12.27740 -12.07888 -12.04402 -11.89344 -11.77732 -11.60475 -11.41013 -11.35414 -11.19244 -11.08383 -10.79872 -10.74976 -10.34502 -9.56196 -8.33096 -6.35548 1.30434 1.32257 1.47634 1.70916 2.05235 2.33046 2.96592 3.02537 3.56474 3.80798 3.90003 3.96395 4.01779 4.07649 4.16529 4.29131 4.35802 4.37157 4.39043 4.44574 4.45636 4.60532 4.60755 4.65474 4.68707 4.78953 4.86497 4.94008 4.97082 5.09681 5.11794 5.12654 5.23772 5.30917 5.31903 5.33275 5.34456 5.36244 5.40651 5.43392 5.54497 5.59256 5.84925 6.22586 6.47804 6.70313 7.29648 7.32052 8.82743 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.005378 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.570848 B = 5205.448797 C = 6676.397288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.936 3.064 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.114 4.114 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.605 5.605 14 C 0.138 3.862 15 C -0.187 4.187 16 C -0.162 4.162 17 C -0.173 4.173 18 C 0.156 3.844 19 C -0.134 4.134 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.106 4.106 23 C -0.137 4.137 24 H 0.267 0.733 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.700 -15.987 0.762 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.154 4.154 11 C 0.304 3.696 12 O -0.450 6.450 13 N -0.337 5.337 14 C 0.016 3.984 15 C -0.207 4.207 16 C -0.198 4.198 17 C -0.211 4.211 18 C 0.054 3.946 19 C -0.172 4.172 20 C -0.145 4.145 21 C -0.159 4.159 22 C -0.144 4.144 23 C -0.175 4.175 24 H 0.076 0.924 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.868 -15.338 0.753 25.909 hybrid contribution -0.545 1.266 0.197 1.392 sum 20.323 -14.072 0.950 24.737 Atomic orbital electron populations 1.70019 1.07703 1.28066 1.52522 1.25763 0.95464 1.02675 0.94257 0.85861 0.79189 0.79691 0.79167 1.19303 1.20197 1.18868 1.21405 0.91165 0.93658 1.50283 0.93277 1.19187 0.93986 0.93674 0.96054 1.21504 0.90269 0.99571 1.04043 1.21064 0.90629 0.83355 0.74582 1.90584 1.70805 1.32892 1.50726 1.48153 1.06770 1.05700 1.73037 1.21388 0.97716 0.84607 0.94691 1.22697 1.07598 0.92409 0.97968 1.23106 0.95359 0.98602 1.02774 1.23024 0.94153 0.99941 1.03965 1.21148 0.77974 1.00703 0.94760 1.21889 0.97127 1.00923 0.97261 1.21442 0.93333 1.01731 0.97948 1.21555 1.00841 0.98647 0.94848 1.21450 0.93303 1.01761 0.97919 1.21946 0.97184 1.01151 0.97254 0.92356 0.97552 0.97466 0.88628 0.89024 0.89808 0.87438 0.90037 0.86943 0.88868 0.89077 0.87348 0.87047 0.93608 0.92423 0.91909 0.89856 0.90185 0.94342 0.89805 0.91707 0.91930 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.74 13.96 21.45 0.30 -59.44 16 2 C 0.02 0.98 5.47 84.66 0.46 1.44 16 3 Si 0.94 47.78 27.47 68.60 1.88 49.66 16 4 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.26 -13.52 6.54 99.48 0.65 -12.87 16 7 C -0.53 -31.13 9.66 25.60 0.25 -30.88 16 8 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 9 C 0.01 0.46 3.33 29.85 0.10 0.56 16 10 C -0.11 -4.59 4.19 29.85 0.13 -4.47 16 11 C 0.51 19.07 7.10 87.66 0.62 19.69 16 12 O -0.57 -25.33 12.19 -3.05 -0.04 -25.37 16 13 N -0.61 -16.27 2.42 -797.82 -1.93 -18.20 16 14 C 0.14 2.79 5.46 86.38 0.47 3.27 16 15 C -0.19 -3.75 5.94 -10.79 -0.06 -3.82 16 16 C -0.16 -2.34 10.18 30.62 0.31 -2.03 16 17 C -0.17 -2.90 10.25 30.62 0.31 -2.59 16 18 C 0.16 3.60 2.54 44.99 0.11 3.71 16 19 C -0.13 -3.36 5.13 30.60 0.16 -3.20 16 20 C -0.11 -1.99 5.92 30.59 0.18 -1.81 16 21 C -0.12 -2.32 5.92 30.59 0.18 -2.13 16 22 C -0.11 -1.93 5.92 30.61 0.18 -1.75 16 23 C -0.14 -3.35 5.13 30.61 0.16 -3.19 16 24 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 25 H 0.01 0.33 7.16 -2.39 -0.02 0.32 16 26 H 0.01 0.37 7.53 -2.39 -0.02 0.35 16 27 H 0.10 3.55 7.40 -2.39 -0.02 3.53 16 28 H 0.09 3.51 8.03 -2.39 -0.02 3.49 16 29 H 0.08 1.80 6.44 -2.39 -0.02 1.78 16 30 H 0.11 1.50 7.65 -2.39 -0.02 1.49 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 1.20 8.03 -2.39 -0.02 1.19 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 1.85 7.80 -2.39 -0.02 1.83 16 37 H 0.05 1.56 6.17 -2.39 -0.01 1.54 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 42 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 1.59 6.17 -2.39 -0.01 1.57 16 Total: -1.00 -72.29 355.33 4.64 -67.65 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.86 Total: 12.90 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 3.56 Total: -27.20 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -1.63 Total: -77.64 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.04 Total: -25.37 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.88 Total: 49.66 kcal Total: -72.29 4.64 -67.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361726504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.845 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds