Wall clock time and date at job start Tue Mar 31 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47496 * 179.97438 * 11 10 9 13 13 C 1.47704 * 111.00247 * 91.52101 * 12 11 10 14 14 C 1.52380 * 87.58852 * 137.81389 * 13 12 11 15 15 C 1.52641 * 121.97600 * 210.00468 * 14 13 12 16 16 C 1.54008 * 86.68224 * 207.92852 * 15 14 13 17 17 C 1.52639 * 121.97493 * 99.53978 * 14 13 12 18 18 C 1.47704 * 111.00275 * 187.87543 * 12 11 10 19 19 H 1.08994 * 113.52832 * 336.86562 * 18 12 11 20 20 C 1.53008 * 113.53017 * 107.50612 * 18 12 11 21 21 H 1.08997 * 110.33224 * 42.74256 * 20 18 12 22 22 C 1.54482 * 110.37154 * 280.49585 * 20 18 12 23 23 C 1.54505 * 104.05908 * 217.19277 * 22 20 18 24 24 C 1.54473 * 104.06672 * 359.97438 * 23 22 20 25 25 O 1.44425 * 110.36833 * 165.11840 * 20 18 12 26 26 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 28 28 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 29 29 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 30 30 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 31 31 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 32 32 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 33 33 H 1.08990 * 113.53547 * 252.49648 * 13 12 11 34 34 H 1.09002 * 113.53064 * 23.07261 * 13 12 11 35 35 H 1.09007 * 113.68197 * 322.37401 * 15 14 13 36 36 H 1.08999 * 113.67944 * 93.47987 * 15 14 13 37 37 H 1.09004 * 113.56345 * 269.89717 * 16 15 14 38 38 H 1.09000 * 113.63783 * 139.15077 * 16 15 14 39 39 H 1.09004 * 113.67772 * 266.51502 * 17 14 13 40 40 H 1.09000 * 113.68489 * 37.62256 * 17 14 13 41 41 H 1.09005 * 110.51019 * 335.83708 * 22 20 18 42 42 H 1.09005 * 110.51030 * 98.40727 * 22 20 18 43 43 H 1.09000 * 110.51404 * 118.64991 * 23 22 20 44 44 H 1.09005 * 110.50908 * 241.35116 * 23 22 20 45 45 H 1.08996 * 110.37377 * 142.80979 * 24 23 22 46 46 H 1.09002 * 110.37234 * 265.03525 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4348 -6.1037 -0.0024 13 6 2.7509 -6.5304 1.3759 14 6 2.6529 -7.9693 0.8842 15 6 2.2065 -9.1073 1.7984 16 6 3.0619 -10.0337 0.9141 17 6 3.8916 -8.7917 0.5389 18 6 1.7406 -7.3935 -0.1918 19 1 0.6897 -7.3685 0.0963 20 6 1.9628 -8.0095 -1.5747 21 1 3.0081 -7.9140 -1.8683 22 6 1.0471 -7.3322 -2.6185 23 6 0.6266 -8.4873 -3.5545 24 6 1.3383 -9.7255 -2.9661 25 8 1.5620 -9.3970 -1.5773 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5574 0.8881 28 1 0.6247 -2.5564 -0.8919 29 1 2.8726 -3.6039 -0.8910 30 1 2.8713 -3.6047 0.8889 31 1 0.8533 -5.0450 0.8877 32 1 0.8540 -5.0447 -0.8923 33 1 3.7527 -6.2484 1.6998 34 1 1.9821 -6.2638 2.1011 35 1 2.5733 -9.0170 2.8209 36 1 1.1381 -9.3168 1.7469 37 1 2.5144 -10.4620 0.0744 38 1 3.6234 -10.7792 1.4770 39 1 4.1647 -8.7500 -0.5156 40 1 4.7360 -8.6119 1.2042 41 1 0.1736 -6.8957 -2.1341 42 1 1.5966 -6.5704 -3.1715 43 1 -0.4549 -8.6218 -3.5331 44 1 0.9687 -8.2981 -4.5720 45 1 0.7003 -10.6053 -3.0493 46 1 2.2867 -9.8960 -3.4757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377729751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:21 Heat of formation + Delta-G solvation = -8.821173 kcal Electronic energy + Delta-G solvation = -22736.156630 eV Core-core repulsion = 19626.677390 eV Total energy + Delta-G solvation = -3109.479240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -41.36144 -38.91190 -36.63006 -34.17034 -32.13245 -31.78394 -30.03504 -27.88717 -25.84500 -25.39817 -24.63574 -22.58242 -22.22028 -21.36151 -20.65772 -20.23955 -18.04022 -16.79309 -16.48449 -16.21392 -15.96342 -15.38415 -15.05473 -14.56960 -14.10717 -13.78088 -13.73288 -13.49046 -13.15091 -12.77019 -12.55516 -12.25188 -12.16615 -11.93213 -11.83915 -11.45834 -11.40741 -11.20515 -10.97183 -10.81410 -10.74802 -10.54278 -10.29288 -10.17941 -10.08176 -9.97248 -9.74781 -9.74149 -9.58170 -8.70836 -8.48357 -8.29338 -6.33041 -4.01339 3.45504 3.47064 3.48075 3.66707 4.15416 4.33253 4.49581 4.56999 4.58378 4.69126 4.77427 4.82962 4.86301 5.06541 5.11530 5.24327 5.28309 5.31687 5.44036 5.46658 5.53936 5.56393 5.65640 5.66691 5.69386 5.73484 5.77047 5.86825 5.89330 5.91610 5.96935 5.99813 6.12466 6.20366 6.36108 6.37617 6.48137 6.63852 6.73619 6.78330 7.03025 7.28949 7.46562 7.58983 8.26975 8.50499 8.92406 9.70832 11.07607 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.003747 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.223284 B = 7470.489290 C = 8321.707087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.090 4.090 11 C 0.020 3.980 12 N -0.458 5.458 13 C 0.012 3.988 14 C -0.101 4.101 15 C -0.125 4.125 16 C -0.138 4.138 17 C -0.105 4.105 18 C 0.058 3.942 19 H 0.081 0.919 20 C 0.097 3.903 21 H 0.078 0.922 22 C -0.150 4.150 23 C -0.155 4.155 24 C 0.045 3.955 25 O -0.366 6.366 26 H 0.268 0.732 27 H 0.004 0.996 28 H 0.005 0.995 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -22.443 -2.283 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.637 4.637 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.129 4.129 11 C -0.108 4.108 12 N -0.181 5.181 13 C -0.117 4.117 14 C -0.102 4.102 15 C -0.163 4.163 16 C -0.175 4.175 17 C -0.142 4.142 18 C -0.051 4.051 19 H 0.099 0.901 20 C 0.039 3.961 21 H 0.096 0.904 22 C -0.188 4.188 23 C -0.193 4.193 24 C -0.032 4.032 25 O -0.285 6.285 26 H 0.078 0.922 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.131 -20.685 -2.574 21.250 hybrid contribution -0.615 -1.511 0.308 1.660 sum 3.516 -22.196 -2.266 22.587 Atomic orbital electron populations 1.70786 1.06888 1.30490 1.46983 1.25860 0.96566 1.02739 0.93851 0.83551 0.74884 0.75345 0.76524 1.20793 1.21466 1.21436 1.22061 0.94306 0.92025 1.55352 0.93341 1.19211 0.94681 0.93337 0.95672 1.21365 0.98660 0.91808 1.01024 1.22878 0.94473 0.92909 1.00499 1.68767 1.30809 1.00538 1.18003 1.23673 1.02503 0.93771 0.91729 1.22391 0.97898 0.93045 0.96837 1.22656 1.00091 0.95764 0.97781 1.22922 0.98364 0.96042 1.00178 1.22458 0.95236 0.94910 1.01632 1.22996 0.97417 0.91514 0.93190 0.90147 1.22720 0.98246 0.80906 0.94212 0.90373 1.22972 1.00353 0.98292 0.97159 1.22934 1.01392 0.95169 0.99787 1.23368 0.99205 0.97776 0.82866 1.89086 1.88839 1.26266 1.24263 0.92214 0.97808 0.97648 0.92586 0.93368 0.94325 0.91498 0.89637 0.91185 0.90183 0.91550 0.88607 0.92299 0.91210 0.90182 0.90900 0.90153 0.90875 0.90697 0.89391 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.64 13.65 55.43 0.76 -27.88 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.84 29.90 -169.99 -5.08 20.76 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.60 -17.62 9.11 -34.44 -0.31 -17.93 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.09 -1.96 5.47 -26.73 -0.15 -2.11 16 11 C 0.02 0.36 4.78 -3.83 -0.02 0.34 16 12 N -0.46 -7.03 6.12 -236.26 -1.45 -8.48 16 13 C 0.01 0.16 7.52 -6.74 -0.05 0.11 16 14 C -0.10 -1.22 1.18 -155.55 -0.18 -1.40 16 15 C -0.13 -1.33 7.90 -26.39 -0.21 -1.54 16 16 C -0.14 -1.40 7.76 -25.70 -0.20 -1.60 16 17 C -0.11 -1.15 7.41 -26.39 -0.20 -1.35 16 18 C 0.06 0.77 2.55 -70.63 -0.18 0.59 16 19 H 0.08 1.12 7.87 -51.93 -0.41 0.71 16 20 C 0.10 1.18 2.51 -25.95 -0.07 1.12 16 21 H 0.08 1.00 6.93 -51.93 -0.36 0.64 16 22 C -0.15 -1.75 6.51 -25.16 -0.16 -1.92 16 23 C -0.16 -1.44 7.09 -25.17 -0.18 -1.62 16 24 C 0.04 0.41 7.63 37.93 0.29 0.70 16 25 O -0.37 -4.25 8.89 -35.23 -0.31 -4.56 16 26 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 27 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 28 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.68 7.35 -51.93 -0.38 0.30 16 32 H 0.07 1.18 7.73 -51.93 -0.40 0.77 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.05 6.01 -51.93 -0.31 0.74 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.91 7.59 -51.93 -0.39 0.52 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 353.17 15.07 5.32 5.32 Total: -1.00 -31.15 353.17 -10.98 -42.13 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.38 Total: -1.10 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -1.83 Total: -26.19 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.69 Total: -36.36 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.31 Total: -4.56 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.15 -10.98 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377729751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.304 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds