Wall clock time and date at job start Tue Mar 31 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47496 * 179.97438 * 11 10 9 13 13 C 1.47704 * 111.00247 * 91.52101 * 12 11 10 14 14 C 1.52380 * 87.58852 * 137.81389 * 13 12 11 15 15 C 1.52641 * 121.97600 * 210.00468 * 14 13 12 16 16 C 1.54008 * 86.68224 * 207.92852 * 15 14 13 17 17 C 1.52639 * 121.97493 * 99.53978 * 14 13 12 18 18 C 1.47704 * 111.00275 * 187.87543 * 12 11 10 19 19 H 1.08994 * 113.52832 * 336.86562 * 18 12 11 20 20 C 1.53008 * 113.53017 * 107.50612 * 18 12 11 21 21 H 1.08997 * 110.33224 * 42.74256 * 20 18 12 22 22 C 1.54482 * 110.37154 * 280.49585 * 20 18 12 23 23 C 1.54505 * 104.05908 * 217.19277 * 22 20 18 24 24 C 1.54473 * 104.06672 * 359.97438 * 23 22 20 25 25 O 1.44425 * 110.36833 * 165.11840 * 20 18 12 26 26 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 28 28 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 29 29 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 30 30 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 31 31 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 32 32 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 33 33 H 1.08990 * 113.53547 * 252.49648 * 13 12 11 34 34 H 1.09002 * 113.53064 * 23.07261 * 13 12 11 35 35 H 1.09007 * 113.68197 * 322.37401 * 15 14 13 36 36 H 1.08999 * 113.67944 * 93.47987 * 15 14 13 37 37 H 1.09004 * 113.56345 * 269.89717 * 16 15 14 38 38 H 1.09000 * 113.63783 * 139.15077 * 16 15 14 39 39 H 1.09004 * 113.67772 * 266.51502 * 17 14 13 40 40 H 1.09000 * 113.68489 * 37.62256 * 17 14 13 41 41 H 1.09005 * 110.51019 * 335.83708 * 22 20 18 42 42 H 1.09005 * 110.51030 * 98.40727 * 22 20 18 43 43 H 1.09000 * 110.51404 * 118.64991 * 23 22 20 44 44 H 1.09005 * 110.50908 * 241.35116 * 23 22 20 45 45 H 1.08996 * 110.37377 * 142.80979 * 24 23 22 46 46 H 1.09002 * 110.37234 * 265.03525 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4348 -6.1037 -0.0024 13 6 2.7509 -6.5304 1.3759 14 6 2.6529 -7.9693 0.8842 15 6 2.2065 -9.1073 1.7984 16 6 3.0619 -10.0337 0.9141 17 6 3.8916 -8.7917 0.5389 18 6 1.7406 -7.3935 -0.1918 19 1 0.6897 -7.3685 0.0963 20 6 1.9628 -8.0095 -1.5747 21 1 3.0081 -7.9140 -1.8683 22 6 1.0471 -7.3322 -2.6185 23 6 0.6266 -8.4873 -3.5545 24 6 1.3383 -9.7255 -2.9661 25 8 1.5620 -9.3970 -1.5773 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5574 0.8881 28 1 0.6247 -2.5564 -0.8919 29 1 2.8726 -3.6039 -0.8910 30 1 2.8713 -3.6047 0.8889 31 1 0.8533 -5.0450 0.8877 32 1 0.8540 -5.0447 -0.8923 33 1 3.7527 -6.2484 1.6998 34 1 1.9821 -6.2638 2.1011 35 1 2.5733 -9.0170 2.8209 36 1 1.1381 -9.3168 1.7469 37 1 2.5144 -10.4620 0.0744 38 1 3.6234 -10.7792 1.4770 39 1 4.1647 -8.7500 -0.5156 40 1 4.7360 -8.6119 1.2042 41 1 0.1736 -6.8957 -2.1341 42 1 1.5966 -6.5704 -3.1715 43 1 -0.4549 -8.6218 -3.5331 44 1 0.9687 -8.2981 -4.5720 45 1 0.7003 -10.6053 -3.0493 46 1 2.2867 -9.8960 -3.4757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377729751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:19 Heat of formation + Delta-G solvation = -27.612310 kcal Electronic energy + Delta-G solvation = -22736.971475 eV Core-core repulsion = 19626.677390 eV Total energy + Delta-G solvation = -3110.294085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.40115 -39.79271 -37.79368 -36.14793 -33.69167 -32.97945 -31.00028 -29.50946 -26.75998 -26.59971 -26.13450 -24.22797 -23.13501 -22.54236 -21.82512 -21.65448 -19.07356 -18.87321 -17.45680 -17.19750 -17.03638 -16.42305 -16.06060 -15.89857 -15.66698 -15.35327 -14.95640 -14.64099 -14.58831 -14.33023 -13.69231 -13.49272 -13.33077 -13.11254 -13.03531 -12.72237 -12.67885 -12.35332 -12.29205 -12.17671 -12.01911 -11.85670 -11.78906 -11.61966 -11.51846 -11.16471 -11.01706 -10.91838 -10.69327 -10.60071 -10.56773 -9.90399 -8.72024 -6.42298 1.50927 1.59765 1.79456 2.46151 2.55956 3.13103 3.14587 3.36471 3.51040 3.70148 3.81709 3.89338 3.89596 3.97042 4.01915 4.09912 4.17938 4.20526 4.29027 4.41290 4.46808 4.53569 4.60940 4.64903 4.72625 4.76765 4.82887 4.85022 4.88611 4.90666 4.92591 4.94619 5.02106 5.05961 5.10956 5.17598 5.21784 5.28502 5.39744 5.47330 5.51511 5.65926 5.87479 5.96063 6.06652 6.15479 6.55134 7.39820 8.68815 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.003747 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.223284 B = 7470.489290 C = 8321.707087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.119 2.881 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.620 4.620 8 H 0.049 0.951 9 C 0.011 3.989 10 C -0.075 4.075 11 C 0.035 3.965 12 N -0.468 5.468 13 C 0.007 3.993 14 C -0.098 4.098 15 C -0.121 4.121 16 C -0.128 4.128 17 C -0.104 4.104 18 C 0.058 3.942 19 H 0.073 0.927 20 C 0.103 3.897 21 H 0.073 0.927 22 C -0.155 4.155 23 C -0.150 4.150 24 C 0.041 3.959 25 O -0.375 6.375 26 H 0.254 0.746 27 H -0.013 1.013 28 H -0.012 1.012 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 -23.711 -2.341 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.939 3.061 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.658 4.658 8 H 0.067 0.933 9 C -0.027 4.027 10 C -0.113 4.113 11 C -0.094 4.094 12 N -0.191 5.191 13 C -0.122 4.122 14 C -0.098 4.098 15 C -0.159 4.159 16 C -0.166 4.166 17 C -0.141 4.141 18 C -0.051 4.051 19 H 0.090 0.910 20 C 0.045 3.955 21 H 0.091 0.909 22 C -0.193 4.193 23 C -0.188 4.188 24 C -0.035 4.035 25 O -0.294 6.294 26 H 0.064 0.936 27 H 0.005 0.995 28 H 0.007 0.993 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.125 0.875 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.358 -21.994 -2.636 22.791 hybrid contribution -1.015 -1.165 0.316 1.577 sum 4.343 -23.160 -2.320 23.677 Atomic orbital electron populations 1.70923 1.07930 1.29764 1.48829 1.27502 0.96618 1.06933 0.92585 0.82930 0.74143 0.70928 0.78101 1.20668 1.19345 1.19344 1.22496 0.94659 0.93499 1.55164 0.93280 1.19146 0.95052 0.94571 0.93935 1.21114 0.97533 0.92236 1.00436 1.22588 0.94282 0.92135 1.00347 1.68725 1.30303 1.00657 1.19388 1.23759 1.02469 0.95129 0.90825 1.22410 0.98462 0.92500 0.96451 1.22683 1.00118 0.94821 0.98252 1.22841 0.97919 0.95944 0.99858 1.22503 0.95108 0.94968 1.01528 1.22984 0.97122 0.90394 0.94593 0.90952 1.22559 0.97943 0.81517 0.93466 0.90940 1.22974 0.99672 0.99026 0.97596 1.22930 1.01808 0.94140 0.99878 1.23570 1.00175 0.98172 0.81585 1.89070 1.88850 1.25480 1.25951 0.93638 0.99479 0.99347 0.93241 0.93647 0.94472 0.91755 0.89446 0.91389 0.88903 0.91865 0.89331 0.90610 0.91840 0.89148 0.92256 0.91070 0.90372 0.89355 0.87491 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.65 21.45 0.29 -59.36 16 2 C -0.04 -2.35 5.46 84.66 0.46 -1.89 16 3 Si 1.12 51.40 29.90 68.60 2.05 53.45 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.62 -36.95 9.11 25.60 0.23 -36.72 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.01 0.57 4.28 29.85 0.13 0.70 16 10 C -0.08 -3.32 5.47 30.59 0.17 -3.15 16 11 C 0.03 1.26 4.78 86.30 0.41 1.68 16 12 N -0.47 -14.34 6.12 -901.38 -5.51 -19.86 16 13 C 0.01 0.18 7.52 83.97 0.63 0.81 16 14 C -0.10 -2.23 1.18 -52.85 -0.06 -2.30 16 15 C -0.12 -2.33 7.90 30.82 0.24 -2.09 16 16 C -0.13 -2.30 7.76 31.26 0.24 -2.06 16 17 C -0.10 -2.08 7.41 30.81 0.23 -1.85 16 18 C 0.06 1.53 2.55 42.58 0.11 1.64 16 19 H 0.07 2.02 7.87 -2.39 -0.02 2.00 16 20 C 0.10 2.46 2.51 31.10 0.08 2.53 16 21 H 0.07 1.82 6.93 -2.39 -0.02 1.80 16 22 C -0.15 -3.60 6.51 31.61 0.21 -3.39 16 23 C -0.15 -2.56 7.09 31.61 0.22 -2.34 16 24 C 0.04 0.66 7.63 72.48 0.55 1.22 16 25 O -0.37 -8.14 8.89 -148.98 -1.32 -9.47 16 26 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 27 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 28 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.34 7.35 -2.39 -0.02 1.32 16 32 H 0.06 2.33 7.73 -2.38 -0.02 2.32 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 1.85 7.44 -2.39 -0.02 1.84 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.75 6.01 -2.38 -0.01 1.74 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.36 6.51 -2.38 -0.02 1.35 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.52 7.59 -2.38 -0.02 1.50 16 42 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -66.93 353.17 0.38 -66.55 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.02 Total: 15.89 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.86 Total: -47.20 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -5.22 Total: -79.21 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.32 Total: -9.47 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -66.93 0.38 -66.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377729751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.933 kcal (2) G-P(sol) polarization free energy of solvation -66.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds