Wall clock time and date at job start Tue Mar 31 2020 01:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.34786 * 119.99733 * 180.02562 * 11 10 9 13 13 O 1.21273 * 119.99789 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99745 * 180.02562 * 12 11 10 15 15 H 1.08993 * 109.47444 * 59.99438 * 14 12 11 16 16 C 1.53001 * 109.46872 * 299.99392 * 14 12 11 17 17 C 1.53003 * 109.46981 * 180.02562 * 16 14 12 18 18 C 1.53005 * 109.46696 * 60.00225 * 17 16 14 19 19 C 1.52992 * 109.47327 * 299.99826 * 18 17 16 20 20 H 1.09001 * 109.47214 * 300.00277 * 19 18 17 21 21 C 1.52999 * 109.47185 * 180.02562 * 19 18 17 22 22 C 1.53001 * 109.47205 * 299.99622 * 21 19 18 23 23 C 1.52998 * 109.47365 * 300.00424 * 22 21 19 24 24 C 1.53005 * 109.47018 * 59.99635 * 23 22 21 25 25 C 1.52998 * 109.47257 * 59.99923 * 19 18 17 26 26 H 1.09001 * 109.47719 * 179.97438 * 25 19 18 27 27 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 29 29 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 30 30 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 31 31 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 32 32 H 0.97000 * 120.00580 * 359.97438 * 11 10 9 33 33 H 1.09001 * 109.47429 * 300.00245 * 16 14 12 34 34 H 1.09001 * 109.47349 * 60.00435 * 16 14 12 35 35 H 1.09003 * 109.47221 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.47676 * 300.00586 * 17 16 14 37 37 H 1.09001 * 109.47199 * 60.00112 * 18 17 16 38 38 H 1.09003 * 109.46872 * 179.97438 * 18 17 16 39 39 H 1.08998 * 109.47611 * 59.99942 * 21 19 18 40 40 H 1.09009 * 109.46941 * 180.02562 * 21 19 18 41 41 H 1.09009 * 109.46675 * 60.00445 * 22 21 19 42 42 H 1.08994 * 109.47411 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.47042 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47215 * 299.99815 * 23 22 21 45 45 H 1.08995 * 109.46981 * 60.00037 * 24 23 22 46 46 H 1.09003 * 109.46872 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 7 1.5130 -4.9307 0.0254 12 6 2.1870 -6.0979 0.0321 13 8 3.3997 -6.0978 0.0316 14 6 1.4335 -7.4030 0.0388 15 1 0.8072 -7.4655 -0.8510 16 6 0.5535 -7.4772 1.2882 17 6 -0.2111 -8.8025 1.2954 18 6 0.7837 -9.9650 1.3024 19 6 1.6638 -9.8908 0.0531 20 1 1.0375 -9.9538 -0.8368 21 6 2.6581 -11.0536 0.0598 22 6 3.5373 -10.9657 1.3088 23 6 4.3022 -9.6406 1.3019 24 6 3.3078 -8.4778 1.2952 25 6 2.4282 -8.5655 0.0458 26 1 3.0555 -8.5127 -0.8440 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6248 -2.5524 0.9029 29 1 0.6241 -2.5613 -0.8770 30 1 2.8721 -3.6088 -0.8720 31 1 2.8721 -3.5996 0.9080 32 1 0.5430 -4.9308 0.0261 33 1 1.1798 -7.4146 2.1781 34 1 -0.1549 -6.6488 1.2835 35 1 -0.8377 -8.8557 2.1857 36 1 -0.8373 -8.8657 0.4055 37 1 1.4100 -9.9020 2.1923 38 1 0.2391 -10.9092 1.3080 39 1 2.1132 -11.9976 0.0647 40 1 3.2854 -11.0004 -0.8301 41 1 2.9103 -11.0187 2.1990 42 1 4.2453 -11.7943 1.3139 43 1 4.9282 -9.5778 2.1920 44 1 4.9291 -9.5876 0.4119 45 1 2.6808 -8.5308 2.1853 46 1 3.8527 -7.5338 1.2898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408077580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:52 Heat of formation + Delta-G solvation = -91.845472 kcal Electronic energy + Delta-G solvation = -22717.180653 eV Core-core repulsion = 19604.101209 eV Total energy + Delta-G solvation = -3113.079444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92620 -38.63497 -35.20431 -35.04768 -33.05729 -32.23477 -30.27480 -29.78074 -28.37530 -24.84549 -23.88477 -22.53816 -22.24801 -21.60908 -21.07437 -19.69588 -17.98983 -16.99657 -16.38289 -15.95523 -15.49264 -15.24663 -14.91235 -14.59335 -14.07740 -13.81744 -13.70810 -13.55074 -13.08533 -12.92276 -12.74822 -12.41501 -12.20097 -12.11151 -11.90329 -11.64527 -11.36729 -11.27287 -11.02370 -10.95926 -10.82715 -10.53122 -10.44322 -10.18073 -10.15428 -10.00215 -9.94015 -9.88160 -9.19882 -8.66082 -8.51736 -8.36106 -6.44844 -4.14736 2.98561 3.41769 3.45298 3.61080 3.65353 4.44221 4.45406 4.49937 4.60077 4.83360 4.87837 5.00646 5.09321 5.11971 5.23883 5.25022 5.32498 5.33403 5.44507 5.47990 5.53024 5.55664 5.59010 5.69563 5.78611 5.88539 5.92073 5.99096 6.03187 6.05185 6.11780 6.17501 6.19361 6.22916 6.27271 6.34352 6.51234 6.58100 6.62473 6.88460 7.24940 7.34389 7.96705 8.09120 8.37770 8.64348 8.79504 9.57271 10.96298 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035682 B = 0.003297 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.517280 B = 8489.505831 C = 8987.782372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.053 0.947 9 C -0.001 4.001 10 C 0.129 3.871 11 N -0.725 5.725 12 C 0.509 3.491 13 O -0.544 6.544 14 C -0.103 4.103 15 H 0.092 0.908 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.082 4.082 20 H 0.067 0.933 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.128 4.128 25 C -0.056 4.056 26 H 0.073 0.927 27 H 0.268 0.732 28 H 0.013 0.987 29 H 0.013 0.987 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.395 0.605 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -22.973 2.138 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.641 4.641 8 H 0.071 0.929 9 C -0.038 4.038 10 C 0.007 3.993 11 N -0.375 5.375 12 C 0.295 3.705 13 O -0.423 6.423 14 C -0.125 4.125 15 H 0.110 0.890 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.101 4.101 20 H 0.085 0.915 21 C -0.150 4.150 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.165 4.165 25 C -0.075 4.075 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.360 -21.296 2.131 21.446 hybrid contribution -0.360 -1.624 -0.064 1.665 sum 1.000 -22.920 2.067 23.035 Atomic orbital electron populations 1.70776 1.06886 1.30558 1.46462 1.25886 0.96498 1.02825 0.93492 0.83475 0.74697 0.74821 0.76862 1.21344 1.21334 1.20935 1.21920 0.94559 0.91407 1.56191 0.92864 1.19449 0.94864 0.92992 0.96480 1.21527 0.95662 0.81264 1.00871 1.46382 1.10372 1.06666 1.74039 1.20580 0.88206 0.85441 0.76241 1.90596 1.14040 1.87569 1.50045 1.21370 0.97746 0.93090 1.00263 0.89001 1.21566 0.98178 0.98025 0.97314 1.21518 0.97651 0.94275 1.01949 1.21692 0.97343 0.97830 0.98661 1.21144 0.96184 0.94560 0.98190 0.91454 1.21530 0.97483 0.97605 0.98358 1.21588 0.98471 0.97531 0.98253 1.21496 0.97902 0.94450 1.01530 1.21916 0.97639 1.00112 0.96877 1.20839 0.95176 0.91736 0.99767 0.90825 0.92150 0.96912 0.96915 0.92523 0.92519 0.77143 0.91056 0.91480 0.91791 0.91909 0.91192 0.92296 0.92283 0.92070 0.91932 0.92618 0.92472 0.92212 0.92318 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.43 13.65 55.43 0.76 -26.68 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 25.22 29.90 -169.99 -5.08 20.13 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.60 -17.05 9.11 -34.44 -0.31 -17.37 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.00 -0.01 4.40 -27.88 -0.12 -0.14 16 10 C 0.13 2.79 5.61 -4.04 -0.02 2.77 16 11 N -0.72 -12.59 5.45 -60.30 -0.33 -12.92 16 12 C 0.51 8.43 6.86 -10.98 -0.08 8.36 16 13 O -0.54 -10.80 13.66 5.56 0.08 -10.73 16 14 C -0.10 -1.26 2.31 -91.77 -0.21 -1.47 16 15 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.11 -1.20 4.83 -26.73 -0.13 -1.33 16 17 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 18 C -0.12 -1.00 4.59 -26.73 -0.12 -1.12 16 19 C -0.08 -0.76 2.46 -90.62 -0.22 -0.98 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 C -0.11 -0.96 5.45 -26.73 -0.15 -1.11 16 22 C -0.12 -1.06 5.65 -26.73 -0.15 -1.21 16 23 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 24 C -0.13 -1.58 4.27 -26.70 -0.11 -1.70 16 25 C -0.06 -0.66 1.63 -90.59 -0.15 -0.81 16 26 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 27 H 0.27 7.96 7.22 -40.82 -0.29 7.66 16 28 H 0.01 0.32 8.01 -51.92 -0.42 -0.09 16 29 H 0.01 0.32 8.00 -51.93 -0.42 -0.09 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.40 5.96 7.89 -40.82 -0.32 5.64 16 33 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 34 H 0.07 0.70 7.56 -51.93 -0.39 0.30 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.63 4.81 -51.93 -0.25 0.38 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.06 0.53 6.43 -51.92 -0.33 0.20 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 46 H 0.09 1.43 5.51 -51.93 -0.29 1.15 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -31.06 338.68 -9.66 -40.72 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.99 Total: 2.63 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.19 Total: -18.27 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.43 Total: -39.59 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.06 -9.66 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408077580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.122 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds