Wall clock time and date at job start Tue Mar 31 2020 00:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00352 * 2 1 4 4 H 1.48496 * 109.47275 * 270.00792 * 3 2 1 5 5 H 1.48505 * 109.46836 * 30.00642 * 3 2 1 6 6 H 1.48499 * 109.47384 * 150.00225 * 3 2 1 7 7 C 1.37884 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46962 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47207 * 176.70393 * 10 9 7 12 12 C 1.48161 * 110.99629 * 65.10425 * 11 10 9 13 13 C 1.52962 * 85.82828 * 136.92072 * 12 11 10 14 14 C 1.52805 * 121.29147 * 102.35001 * 13 12 11 15 15 C 1.53963 * 86.74678 * 101.21531 * 14 13 12 16 16 C 1.52972 * 121.22227 * 211.31708 * 13 12 11 17 17 C 1.48161 * 111.00181 * 164.73422 * 11 10 9 18 18 H 1.09005 * 113.81292 * 337.30713 * 17 11 10 19 19 C 1.52993 * 113.81589 * 108.85018 * 17 11 10 20 20 C 1.53179 * 109.54477 * 29.27294 * 19 17 11 21 21 C 1.53089 * 109.16391 * 183.14872 * 20 19 17 22 22 O 1.42905 * 109.41452 * 57.61458 * 21 20 19 23 23 C 1.42906 * 114.09300 * 298.83558 * 22 21 20 24 24 C 1.53091 * 109.41137 * 61.16027 * 23 22 21 25 25 H 0.97005 * 119.99855 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47691 * 59.99963 * 9 7 2 27 27 H 1.09001 * 109.46881 * 299.99606 * 9 7 2 28 28 H 1.09003 * 109.47511 * 56.70087 * 10 9 7 29 29 H 1.09006 * 109.46983 * 296.70377 * 10 9 7 30 30 H 1.08998 * 113.82129 * 22.69470 * 12 11 10 31 31 H 1.09001 * 113.92045 * 251.15450 * 12 11 10 32 32 H 1.09004 * 113.66928 * 346.75286 * 14 13 12 33 33 H 1.09003 * 113.75257 * 215.69110 * 14 13 12 34 34 H 1.09006 * 113.58219 * 139.26396 * 15 14 13 35 35 H 1.09001 * 113.57813 * 269.96836 * 15 14 13 36 36 H 1.08992 * 113.67092 * 144.29079 * 16 13 12 37 37 H 1.09008 * 113.71173 * 13.16726 * 16 13 12 38 38 H 1.09004 * 109.54373 * 149.53706 * 19 17 11 39 39 H 1.08996 * 109.52029 * 303.06347 * 20 19 17 40 40 H 1.09007 * 109.52016 * 63.24427 * 20 19 17 41 41 H 1.08992 * 109.48562 * 297.62238 * 21 20 19 42 42 H 1.09003 * 109.47904 * 177.59257 * 21 20 19 43 43 H 1.08999 * 109.48139 * 301.17914 * 23 22 21 44 44 H 1.09002 * 109.48905 * 181.14826 * 23 22 21 45 45 H 1.09005 * 109.51970 * 182.48367 * 24 23 22 46 46 H 1.08994 * 109.52155 * 62.30012 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5124 -4.9328 0.0791 12 6 0.6887 -5.1475 -1.1336 13 6 1.1919 -6.5911 -1.0838 14 6 0.3100 -7.7212 -0.5545 15 6 0.0460 -8.0866 -2.0267 16 6 1.3864 -7.4076 -2.3627 17 6 2.3866 -6.0734 -0.2813 18 1 3.2424 -5.7948 -0.8963 19 6 2.7648 -6.9611 0.9060 20 6 1.6469 -6.9210 1.9524 21 6 2.0680 -7.7483 3.1697 22 8 3.2954 -7.2349 3.6914 23 6 4.3886 -7.2910 2.7726 24 6 4.0606 -6.4454 1.5393 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 2.9101 -3.5717 0.8584 29 1 2.8323 -3.6382 -0.9186 30 1 1.0342 -4.5908 -2.0047 31 1 -0.3834 -5.0490 -0.9628 32 1 -0.5765 -7.3728 -0.0244 33 1 0.8590 -8.4862 -0.0054 34 1 0.0417 -9.1602 -2.2155 35 1 -0.8189 -7.5789 -2.4536 36 1 2.2408 -8.0833 -2.3248 37 1 1.3577 -6.8092 -3.2734 38 1 2.9090 -7.9859 0.5637 39 1 1.4695 -5.8895 2.2566 40 1 0.7342 -7.3382 1.5266 41 1 2.2058 -8.7879 2.8727 42 1 1.2944 -7.6884 3.9353 43 1 4.5567 -8.3247 2.4704 44 1 5.2868 -6.9017 3.2520 45 1 4.8742 -6.5222 0.8181 46 1 3.9321 -5.4042 1.8353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425555518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:09 Heat of formation + Delta-G solvation = -24.865246 kcal Electronic energy + Delta-G solvation = -23248.768648 eV Core-core repulsion = 20138.593684 eV Total energy + Delta-G solvation = -3110.174964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27168 -39.75242 -37.50410 -35.45679 -34.59313 -32.26989 -31.92908 -28.30282 -27.88256 -26.74038 -25.35712 -24.48427 -24.07093 -22.59594 -21.49292 -20.69790 -18.84919 -18.52239 -17.11140 -16.95777 -16.81006 -16.52660 -16.46899 -15.99217 -15.51535 -15.33898 -14.96213 -14.71288 -14.37230 -14.00391 -13.78208 -13.57125 -13.17789 -13.04644 -12.98309 -12.76969 -12.56443 -12.49589 -12.39589 -12.15740 -11.97154 -11.88165 -11.64395 -11.38193 -11.36439 -11.19328 -11.08232 -10.94090 -10.61743 -10.59681 -10.23761 -9.52398 -8.24419 -6.36578 1.36037 1.38151 1.49358 2.36668 3.00751 3.07455 3.08688 3.34632 3.58264 3.83601 3.90077 3.94464 4.05571 4.09303 4.20528 4.28526 4.31444 4.43106 4.44482 4.53327 4.58354 4.64014 4.68466 4.74318 4.83418 4.86428 4.88855 4.91674 4.93411 4.97900 5.02064 5.11043 5.14510 5.21358 5.27832 5.36401 5.40466 5.48224 5.54379 5.58136 5.66043 5.72123 5.78542 6.14512 6.31635 6.37915 6.79757 7.32807 8.87704 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.005074 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.124270 B = 5517.123551 C = 6704.613330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.040 3.960 10 C 0.053 3.947 11 N -0.478 5.478 12 C 0.026 3.974 13 C -0.099 4.099 14 C -0.105 4.105 15 C -0.132 4.132 16 C -0.125 4.125 17 C 0.047 3.953 18 H 0.070 0.930 19 C -0.056 4.056 20 C -0.141 4.141 21 C 0.059 3.941 22 O -0.412 6.412 23 C 0.063 3.937 24 C -0.152 4.152 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.013 1.013 28 H 0.052 0.948 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -21.615 -1.215 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.075 0.925 9 C 0.003 3.997 10 C -0.076 4.076 11 N -0.200 5.200 12 C -0.103 4.103 13 C -0.099 4.099 14 C -0.142 4.142 15 C -0.169 4.169 16 C -0.163 4.163 17 C -0.062 4.062 18 H 0.088 0.912 19 C -0.074 4.074 20 C -0.179 4.179 21 C -0.018 4.018 22 O -0.331 6.331 23 C -0.013 4.013 24 C -0.190 4.190 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.868 -21.379 -0.372 21.929 hybrid contribution 0.451 1.832 -1.032 2.151 sum 5.318 -19.547 -1.404 20.306 Atomic orbital electron populations 1.70112 1.07856 1.27842 1.51311 1.25978 0.95765 1.03371 0.94459 0.85421 0.78612 0.78239 0.78626 1.19485 1.20522 1.18848 1.21606 0.93368 0.92380 1.51144 0.92471 1.18824 0.94020 0.92254 0.94590 1.22374 0.96139 0.90786 0.98276 1.68574 1.14735 1.01763 1.34958 1.23438 0.99194 0.95117 0.92561 1.22934 0.95921 0.93235 0.97843 1.22677 0.98515 0.96156 0.96856 1.22810 0.96958 1.01295 0.95881 1.22842 0.99085 0.98569 0.95797 1.23383 0.94895 0.92253 0.95717 0.91237 1.20910 0.94358 0.98677 0.93488 1.22194 0.99188 1.00889 0.95615 1.22750 0.85892 0.96788 0.96337 1.87892 1.19652 1.84890 1.40687 1.22648 0.89296 0.99644 0.89719 1.22255 0.98413 0.99727 0.98597 0.92685 0.99071 0.99483 0.92943 0.95884 0.92766 0.91095 0.91991 0.87757 0.89521 0.90907 0.88197 0.92047 0.88507 0.93418 0.89342 0.91259 0.89020 0.91100 0.88645 0.89852 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.55 -32.53 9.11 25.60 0.23 -32.29 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.04 2.27 4.90 29.85 0.15 2.42 16 10 C 0.05 2.36 4.84 86.30 0.42 2.78 16 11 N -0.48 -17.70 4.56 -898.77 -4.10 -21.81 16 12 C 0.03 0.88 6.68 86.05 0.57 1.46 16 13 C -0.10 -2.44 1.13 -52.25 -0.06 -2.50 16 14 C -0.11 -2.06 5.27 30.85 0.16 -1.90 16 15 C -0.13 -2.26 8.08 31.24 0.25 -2.01 16 16 C -0.13 -2.40 7.87 30.91 0.24 -2.16 16 17 C 0.05 1.30 3.03 44.65 0.14 1.43 16 18 H 0.07 2.00 7.68 -2.38 -0.02 1.98 16 19 C -0.06 -1.29 1.84 -10.68 -0.02 -1.31 16 20 C -0.14 -3.59 4.56 30.68 0.14 -3.45 16 21 C 0.06 1.29 6.84 72.01 0.49 1.78 16 22 O -0.41 -10.99 10.77 -148.98 -1.60 -12.59 16 23 C 0.06 1.33 6.84 72.01 0.49 1.83 16 24 C -0.15 -3.65 5.41 30.68 0.17 -3.48 16 25 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 26 H -0.01 -0.54 7.43 -2.39 -0.02 -0.56 16 27 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H 0.05 2.42 7.82 -2.39 -0.02 2.40 16 29 H 0.02 1.01 7.70 -2.38 -0.02 0.99 16 30 H 0.05 2.00 7.84 -2.39 -0.02 1.98 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.06 1.37 7.82 -2.38 -0.02 1.35 16 33 H 0.10 1.66 6.49 -2.39 -0.02 1.64 16 34 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.26 8.14 -2.38 -0.02 1.25 16 38 H 0.10 1.71 7.65 -2.39 -0.02 1.70 16 39 H 0.05 1.64 7.31 -2.39 -0.02 1.62 16 40 H 0.09 2.04 4.79 -2.38 -0.01 2.03 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.04 1.27 7.82 -2.39 -0.02 1.25 16 Total: -1.00 -69.06 347.31 1.37 -67.69 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.92 Total: 14.15 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 3.84 Total: -36.80 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -3.82 Total: -79.97 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -1.60 Total: -12.59 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.06 1.37 -67.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425555518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.822 kcal (2) G-P(sol) polarization free energy of solvation -69.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds