Wall clock time and date at job start Tue Mar 31 2020 02:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47036 * 2 1 4 4 C 1.53005 * 109.47365 * 299.99545 * 3 2 1 5 5 C 1.52998 * 109.46909 * 300.00511 * 4 3 2 6 6 C 1.53001 * 109.47033 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47347 * 174.99550 * 6 5 4 8 8 O 1.21276 * 119.99981 * 353.70160 * 7 6 5 9 9 N 1.34775 * 119.99986 * 173.69520 * 7 6 5 10 10 C 1.46496 * 120.00119 * 184.17989 * 9 7 6 11 11 C 1.53007 * 109.47286 * 184.33111 * 10 9 7 12 12 C 1.50699 * 115.54885 * 294.97692 * 11 10 9 13 13 H 1.08004 * 119.99830 * 114.78032 * 12 11 10 14 14 C 1.37873 * 119.99889 * 294.50103 * 12 11 10 15 15 N 1.31516 * 120.00124 * 172.37510 * 14 12 11 16 16 Si 1.86797 * 120.00193 * 352.38466 * 14 12 11 17 17 H 1.48501 * 109.47506 * 94.03957 * 16 14 12 18 18 H 1.48496 * 109.47230 * 214.04359 * 16 14 12 19 19 H 1.48508 * 109.47056 * 334.04260 * 16 14 12 20 20 C 1.53002 * 117.49832 * 80.64668 * 11 10 9 21 21 C 1.53002 * 117.49762 * 149.30403 * 11 10 9 22 22 C 1.52996 * 109.47195 * 59.99767 * 5 4 3 23 23 C 1.52992 * 109.47249 * 299.99517 * 22 5 4 24 24 H 1.09001 * 109.46883 * 60.00070 * 1 2 3 25 25 H 1.08993 * 109.47231 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47525 * 300.00609 * 1 2 3 27 27 H 1.09001 * 109.46883 * 119.99930 * 2 1 3 28 28 H 1.09006 * 109.47173 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47498 * 60.00101 * 3 2 1 30 30 H 1.08993 * 109.47289 * 180.02562 * 4 3 2 31 31 H 1.09006 * 109.46503 * 60.00167 * 4 3 2 32 32 H 1.09002 * 109.47432 * 299.99669 * 5 4 3 33 33 H 1.09005 * 109.47042 * 54.99483 * 6 5 4 34 34 H 1.09005 * 109.47053 * 295.00429 * 6 5 4 35 35 H 0.97005 * 120.00222 * 4.17579 * 9 7 6 36 36 H 1.08994 * 109.47502 * 64.32741 * 10 9 7 37 37 H 1.09004 * 109.46854 * 304.32586 * 10 9 7 38 38 H 0.97001 * 120.00569 * 179.97438 * 15 14 12 39 39 H 1.09000 * 117.49980 * 215.00170 * 20 11 10 40 40 H 1.09003 * 117.49766 * 0.02642 * 20 11 10 41 41 H 1.08998 * 117.50240 * 359.97438 * 21 11 10 42 42 H 1.09001 * 117.49393 * 144.97333 * 21 11 10 43 43 H 1.09000 * 109.47167 * 60.00406 * 22 5 4 44 44 H 1.09006 * 109.47087 * 179.97438 * 22 5 4 45 45 H 1.08994 * 109.47352 * 300.00349 * 23 22 5 46 46 H 1.09002 * 109.47197 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 -1.2493 5 6 2.0401 1.4424 -2.4985 6 6 1.5297 2.1633 -3.7478 7 6 2.1306 1.5280 -4.9751 8 8 2.9780 0.6681 -4.8597 9 7 1.7263 1.9155 -6.2010 10 6 2.2424 1.2353 -7.3915 11 6 1.7137 1.9325 -8.6467 12 6 0.2225 1.8591 -8.8517 13 1 -0.3725 2.7597 -8.8158 14 6 -0.3813 0.6429 -9.0907 15 7 -1.6932 0.5546 -9.1204 16 14 0.6637 -0.8796 -9.3720 17 1 0.8453 -1.6000 -8.0862 18 1 -0.0131 -1.7713 -10.3476 19 1 1.9900 -0.4779 -9.9059 20 6 2.4272 3.2079 -9.0999 21 6 2.6002 1.9104 -9.8935 22 6 1.5300 0.0000 -2.4984 23 6 2.0400 -0.7212 -1.2493 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 0.8899 30 1 1.8937 3.1912 -1.2495 31 1 0.4400 2.1637 -1.2493 32 1 3.1301 1.4424 -2.4985 33 1 1.8177 3.2137 -3.7043 34 1 0.4433 2.0861 -3.7935 35 1 1.0935 2.6446 -6.2951 36 1 1.9137 0.1961 -7.3874 37 1 3.3318 1.2719 -7.3872 38 1 -2.1181 -0.3009 -9.2890 39 1 1.8180 3.9938 -9.5464 40 1 3.2734 3.5500 -8.5041 41 1 3.5603 1.3996 -9.8195 42 1 2.1049 1.8423 -10.8620 43 1 0.4400 0.0000 -2.4985 44 1 1.8930 -0.5138 -3.3886 45 1 3.1299 -0.7213 -1.2492 46 1 1.6770 -1.7490 -1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431139450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:37 Heat of formation + Delta-G solvation = -51.268823 kcal Electronic energy + Delta-G solvation = -22586.538386 eV Core-core repulsion = 19475.218477 eV Total energy + Delta-G solvation = -3111.319909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.85464 -38.52491 -36.97699 -33.38460 -33.28132 -32.20049 -30.72130 -28.78997 -26.88203 -25.77193 -24.63385 -22.61667 -21.70395 -21.19913 -19.68622 -19.05950 -18.63039 -16.81841 -16.20506 -15.74393 -15.29015 -15.09808 -14.80890 -14.58033 -13.99987 -13.84255 -13.54821 -13.26095 -12.93324 -12.85261 -12.44673 -12.34225 -12.18222 -11.98954 -11.76538 -11.44390 -11.39271 -11.08050 -10.96658 -10.84688 -10.73218 -10.60789 -10.27871 -10.13198 -10.07619 -9.93541 -9.59915 -9.26188 -9.11219 -8.79688 -8.49238 -8.24568 -6.19695 -4.22002 3.17075 3.27656 3.37657 3.43864 3.80351 4.37794 4.63974 4.68412 4.74983 4.86907 5.12193 5.13757 5.18093 5.21496 5.35923 5.44582 5.48174 5.59349 5.62701 5.66557 5.69439 5.76284 5.80599 5.87254 5.93322 5.96945 6.01152 6.06594 6.12512 6.17168 6.21283 6.24347 6.31902 6.38696 6.43727 6.52451 6.61910 6.64593 6.70199 6.94831 7.06201 7.19714 7.65899 8.23154 8.39322 8.81211 8.84036 9.44437 10.91256 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.004257 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.624959 B = 6575.148133 C = 7031.214706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.112 4.112 4 C -0.117 4.117 5 C -0.068 4.068 6 C -0.138 4.138 7 C 0.505 3.495 8 O -0.557 6.557 9 N -0.704 5.704 10 C 0.154 3.846 11 C -0.018 4.018 12 C -0.490 4.490 13 H 0.078 0.922 14 C 0.084 3.916 15 N -0.892 5.892 16 Si 0.864 3.136 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.248 1.248 20 C -0.180 4.180 21 C -0.185 4.185 22 C -0.121 4.121 23 C -0.111 4.111 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.406 0.594 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 2.532 15.451 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.149 4.149 4 C -0.154 4.154 5 C -0.086 4.086 6 C -0.179 4.179 7 C 0.291 3.709 8 O -0.437 6.437 9 N -0.353 5.353 10 C 0.030 3.970 11 C -0.019 4.019 12 C -0.527 4.527 13 H 0.096 0.904 14 C -0.119 4.119 15 N -0.528 5.528 16 Si 0.691 3.309 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.171 1.171 20 C -0.218 4.218 21 C -0.224 4.224 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.241 0.759 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.206 1.785 15.477 16.770 hybrid contribution 0.035 -0.578 -0.361 0.682 sum 6.241 1.207 15.116 16.398 Atomic orbital electron populations 1.21944 0.95468 1.01552 1.01870 1.21106 0.95886 0.96026 0.98056 1.21530 1.00475 0.95350 0.97592 1.21645 1.01061 0.98565 0.94158 1.20865 1.01009 0.94775 0.91994 1.21750 1.02200 1.00807 0.93100 1.20620 0.82382 0.82987 0.84867 1.90619 1.33003 1.33100 1.86969 1.45902 1.46653 1.37498 1.05246 1.21037 0.95878 0.95878 0.84162 1.19624 0.94793 0.96826 0.90638 1.20222 0.87448 0.95139 1.49929 0.90447 1.24900 0.94554 0.98737 0.93746 1.69900 1.08748 1.25901 1.48267 0.87051 0.82300 0.83086 0.78430 1.20438 1.21785 1.17117 1.22798 1.02219 0.91893 1.04854 1.23028 1.00494 1.01029 0.97805 1.21703 1.00224 0.95319 0.98601 1.21520 1.00502 0.98567 0.94279 0.91733 0.93029 0.93182 0.91848 0.92139 0.92327 0.92193 0.91593 0.90501 0.89238 0.89093 0.75918 0.92649 0.93426 0.92472 0.89644 0.90954 0.91152 0.89332 0.92265 0.90311 0.92150 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.50 37.16 0.32 -1.12 16 2 C -0.09 -0.91 3.19 -90.62 -0.29 -1.20 16 3 C -0.11 -1.05 5.45 -26.73 -0.15 -1.20 16 4 C -0.12 -1.17 4.93 -26.73 -0.13 -1.31 16 5 C -0.07 -0.85 1.84 -90.62 -0.17 -1.02 16 6 C -0.14 -1.84 5.17 -27.88 -0.14 -1.98 16 7 C 0.51 9.02 7.43 -10.99 -0.08 8.93 16 8 O -0.56 -11.62 14.21 5.56 0.08 -11.54 16 9 N -0.70 -13.30 5.48 -60.30 -0.33 -13.63 16 10 C 0.15 3.30 5.16 -4.04 -0.02 3.28 16 11 C -0.02 -0.39 0.85 -155.66 -0.13 -0.52 16 12 C -0.49 -12.76 9.14 -34.44 -0.31 -13.08 16 13 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 14 C 0.08 2.31 5.46 -17.82 -0.10 2.22 16 15 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 16 Si 0.86 21.17 25.08 -169.99 -4.26 16.90 16 17 H -0.28 -6.96 7.03 56.52 0.40 -6.56 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.25 -5.71 5.64 56.52 0.32 -5.39 16 20 C -0.18 -3.45 9.96 -26.69 -0.27 -3.72 16 21 C -0.19 -3.78 7.91 -26.69 -0.21 -3.99 16 22 C -0.12 -1.65 4.67 -26.74 -0.12 -1.78 16 23 C -0.11 -1.30 5.45 -26.73 -0.15 -1.44 16 24 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 32 H 0.08 1.07 7.86 -51.93 -0.41 0.67 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.41 7.17 8.33 -40.82 -0.34 6.83 16 36 H 0.06 1.32 5.23 -51.93 -0.27 1.05 16 37 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 43 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 44 H 0.08 1.33 6.18 -51.93 -0.32 1.01 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 347.32 15.07 5.23 5.23 Total: -1.00 -29.47 347.32 -8.70 -38.17 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.24 Total: 8.10 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.96 Total: -17.92 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.44 Total: -38.94 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.26 Total: 16.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.47 -8.70 -38.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431139450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.099 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds