Wall clock time and date at job start Tue Mar 31 2020 01:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47261 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47290 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46843 * 179.97438 * 16 15 14 18 18 C 1.54265 * 110.03180 * 292.90647 * 17 16 15 19 19 C 1.54969 * 104.16091 * 217.14030 * 18 17 16 20 20 C 1.54886 * 102.77756 * 37.88254 * 19 18 17 21 21 C 1.53878 * 110.03231 * 175.69034 * 17 16 15 22 22 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 23 23 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 24 24 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 25 25 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 26 26 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 27 27 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 28 28 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 29 29 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 30 30 H 1.09003 * 109.46759 * 299.99798 * 15 14 12 31 31 H 1.09002 * 109.47303 * 59.99758 * 15 14 12 32 32 H 1.08993 * 109.47257 * 299.99613 * 16 15 14 33 33 H 1.08996 * 109.47465 * 59.99926 * 16 15 14 34 34 H 1.08999 * 110.02052 * 54.29928 * 17 16 15 35 35 H 1.09002 * 110.48656 * 335.78366 * 18 17 16 36 36 H 1.09006 * 110.49030 * 98.43074 * 18 17 16 37 37 H 1.09004 * 110.71395 * 279.57541 * 19 18 17 38 38 H 1.08994 * 110.92794 * 156.29970 * 19 18 17 39 39 H 1.08999 * 110.49044 * 203.40402 * 20 19 18 40 40 H 1.09005 * 110.59671 * 80.82184 * 20 19 18 41 41 H 1.08996 * 110.03358 * 238.56995 * 21 17 16 42 42 H 1.08999 * 110.03025 * 359.97438 * 21 17 16 43 43 H 1.08997 * 117.49622 * 359.97438 * 22 9 7 44 44 H 1.09000 * 117.49928 * 145.02150 * 22 9 7 45 45 H 1.08996 * 117.50254 * 214.97905 * 23 9 7 46 46 H 1.09005 * 117.49689 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 6 3.0420 -4.6298 5.6209 16 6 4.3361 -4.9365 6.3772 17 6 3.9979 -5.5053 7.7567 18 6 3.3267 -4.4214 8.6252 19 6 3.8838 -4.6771 10.0484 20 6 5.3564 -5.0714 9.7741 21 6 5.2877 -5.9188 8.4870 22 6 1.5731 -3.5804 -0.9271 23 6 0.2453 -2.8219 -0.9976 24 1 -0.4851 0.8368 -0.0732 25 1 0.3750 -2.1615 2.0429 26 1 0.3014 -3.8500 1.4844 27 1 3.0164 -3.0718 1.8343 28 1 3.9647 -4.7898 3.6811 29 1 3.9582 -3.1438 4.3583 30 1 2.4571 -3.9006 6.1816 31 1 2.4640 -5.5465 5.5038 32 1 4.9205 -5.6658 5.8164 33 1 4.9145 -4.0201 6.4943 34 1 3.3353 -6.3646 7.6538 35 1 3.6077 -3.4268 8.2788 36 1 2.2431 -4.5389 8.6121 37 1 3.3485 -5.4950 10.5308 38 1 3.8325 -3.7730 10.6549 39 1 5.7532 -5.6626 10.5994 40 1 5.9677 -4.1832 9.6140 41 1 5.2507 -6.9785 8.7392 42 1 6.1545 -5.7146 7.8584 43 1 2.3246 -3.3505 -1.6824 44 1 1.5429 -4.6177 -0.5938 45 1 -0.6578 -3.3606 -0.7107 46 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431152887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:13 Heat of formation + Delta-G solvation = -74.265205 kcal Electronic energy + Delta-G solvation = -21493.571845 eV Core-core repulsion = 18381.254738 eV Total energy + Delta-G solvation = -3112.317107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.68585 -39.35419 -38.47230 -35.16268 -34.90890 -33.95902 -31.04813 -29.53172 -28.33739 -27.34904 -25.83660 -23.01054 -22.67028 -21.45359 -21.33525 -20.84426 -20.33932 -18.32931 -17.67098 -16.91835 -16.65339 -16.57455 -16.44633 -15.91094 -15.54065 -15.30256 -14.72591 -14.32926 -14.15073 -14.05927 -13.63940 -13.57326 -13.33043 -12.95885 -12.89614 -12.83658 -12.39557 -12.31570 -12.03311 -11.92122 -11.90588 -11.75103 -11.51695 -11.43154 -11.41381 -11.31627 -11.13028 -10.94718 -10.80035 -10.44976 -10.02986 -9.81732 -8.10014 -6.24585 1.41064 1.44879 1.54113 1.79285 2.40128 2.46703 3.18161 3.49702 3.71215 3.79588 3.83349 3.95584 4.17848 4.18314 4.24732 4.52710 4.54506 4.57147 4.61845 4.65149 4.66917 4.73148 4.74620 4.82255 4.86086 4.92485 4.98778 4.99582 5.05867 5.06436 5.10377 5.17515 5.27597 5.29658 5.35271 5.43533 5.49337 5.53847 5.55647 5.61683 5.63851 5.72100 5.78131 6.36087 6.80519 6.85834 7.43860 7.46038 8.97257 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022538 B = 0.003048 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.059579 B = 9184.558853 C = 9804.635825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.951 3.049 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.503 4.503 8 H 0.066 0.934 9 C 0.003 3.997 10 C 0.179 3.821 11 N -0.702 5.702 12 C 0.495 3.505 13 O -0.603 6.603 14 C -0.129 4.129 15 C -0.098 4.098 16 C -0.103 4.103 17 C -0.094 4.094 18 C -0.125 4.125 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.176 4.176 23 C -0.156 4.156 24 H 0.258 0.742 25 H 0.022 0.978 26 H 0.034 0.966 27 H 0.412 0.588 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -10.366 14.292 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.182 1.182 5 H -0.211 1.211 6 H -0.216 1.216 7 C -0.541 4.541 8 H 0.084 0.916 9 C 0.002 3.998 10 C 0.054 3.946 11 N -0.352 5.352 12 C 0.284 3.716 13 O -0.486 6.486 14 C -0.169 4.169 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.113 4.113 18 C -0.163 4.163 19 C -0.164 4.164 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.213 4.213 23 C -0.195 4.195 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.247 0.753 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.109 -10.391 14.694 21.691 hybrid contribution -0.200 1.305 -0.506 1.414 sum 11.909 -9.086 14.188 20.632 Atomic orbital electron populations 1.70128 1.07358 1.27245 1.50000 1.25747 0.95496 1.02243 0.94412 0.85608 0.79632 0.79943 0.77072 1.18204 1.21053 1.21569 1.20724 0.93053 0.89471 1.50866 0.91570 1.19083 1.00116 0.94028 0.86539 1.20521 0.85524 0.95985 0.92590 1.45951 1.10358 1.63104 1.15765 1.21635 0.92451 0.76125 0.81398 1.90626 1.33555 1.55678 1.68729 1.21725 0.93754 1.04655 0.96759 1.21289 0.98195 1.00480 0.93669 1.21681 0.96039 1.01545 0.94791 1.21789 0.97038 0.97771 0.94653 1.22494 0.99371 0.98894 0.95530 1.22527 0.96333 1.01228 0.96329 1.22360 0.96332 0.99854 0.97590 1.22212 0.97175 0.99806 0.96471 1.22999 0.98796 0.95885 1.03607 1.22391 0.92129 1.01903 1.03055 0.93255 0.95960 0.94765 0.75251 0.86351 0.87205 0.93269 0.92938 0.90530 0.91109 0.91803 0.91903 0.92942 0.91593 0.91498 0.91089 0.91566 0.91597 0.90985 0.89519 0.89434 0.91487 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.71 12.65 21.45 0.27 -51.43 16 2 C 0.02 1.14 5.43 84.66 0.46 1.60 16 3 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.50 -25.57 8.59 25.60 0.22 -25.35 16 8 H 0.07 3.22 7.82 -2.91 -0.02 3.19 16 9 C 0.00 0.14 1.47 -52.93 -0.08 0.06 16 10 C 0.18 8.26 5.50 86.38 0.48 8.73 16 11 N -0.70 -26.54 5.48 -463.06 -2.54 -29.08 16 12 C 0.50 17.88 7.83 87.66 0.69 18.56 16 13 O -0.60 -27.22 15.98 -3.01 -0.05 -27.27 16 14 C -0.13 -3.07 5.70 29.85 0.17 -2.90 16 15 C -0.10 -2.32 4.35 30.59 0.13 -2.18 16 16 C -0.10 -1.74 4.34 30.59 0.13 -1.61 16 17 C -0.09 -1.59 2.93 -10.07 -0.03 -1.62 16 18 C -0.13 -2.29 5.50 31.70 0.17 -2.12 16 19 C -0.13 -1.92 6.91 31.91 0.22 -1.69 16 20 C -0.12 -1.63 6.83 31.67 0.22 -1.42 16 21 C -0.12 -1.63 6.46 31.32 0.20 -1.43 16 22 C -0.18 -7.02 9.96 30.62 0.30 -6.71 16 23 C -0.16 -7.25 9.14 30.62 0.28 -6.97 16 24 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 25 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.03 1.59 8.09 -2.39 -0.02 1.57 16 27 H 0.41 13.63 8.33 -92.71 -0.77 12.86 16 28 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.36 7.44 -2.39 -0.02 1.34 16 31 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.11 8.02 -2.39 -0.02 1.09 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.20 7.77 -2.39 -0.02 1.18 16 36 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 43 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.06 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -63.72 369.61 3.43 -60.29 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.15 Total: 28.50 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 3.57 Total: -25.04 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.27 Total: -80.52 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.27 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -63.72 3.43 -60.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431152887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.974 kcal (2) G-P(sol) polarization free energy of solvation -63.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds