Wall clock time and date at job start Tue Mar 31 2020 02:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.62620 * 2 1 4 4 O 1.21272 * 120.00418 * 96.19587 * 3 2 1 5 5 N 1.34777 * 119.99758 * 276.19196 * 3 2 1 6 6 C 1.46493 * 120.00098 * 175.07910 * 5 3 2 7 7 C 1.53007 * 109.47421 * 185.14050 * 6 5 3 8 8 C 1.50701 * 115.54912 * 281.31380 * 7 6 5 9 9 H 1.07999 * 119.99721 * 147.09272 * 8 7 6 10 10 C 1.37876 * 119.99789 * 327.08955 * 8 7 6 11 11 N 1.31514 * 119.99788 * 164.02303 * 10 8 7 12 12 Si 1.86801 * 120.00118 * 344.02250 * 10 8 7 13 13 H 1.48495 * 109.47049 * 95.82022 * 12 10 8 14 14 H 1.48500 * 109.47021 * 215.81814 * 12 10 8 15 15 H 1.48493 * 109.47058 * 335.81723 * 12 10 8 16 16 C 1.52996 * 117.50089 * 135.60313 * 7 6 5 17 17 C 1.53002 * 117.49648 * 66.97780 * 7 6 5 18 18 C 1.50476 * 109.78629 * 120.48263 * 2 1 3 19 19 C 1.54065 * 112.49795 * 213.95626 * 18 2 1 20 20 C 1.54070 * 112.81653 * 318.28440 * 19 18 2 21 21 C 1.50474 * 112.49871 * 318.28574 * 20 19 18 22 22 C 1.54234 * 108.52364 * 94.14960 * 21 20 19 23 23 C 1.45547 * 112.40510 * 280.01220 * 22 21 20 24 24 H 1.09002 * 109.47031 * 64.89033 * 1 2 3 25 25 H 1.08998 * 109.46697 * 184.88216 * 1 2 3 26 26 H 1.08996 * 109.47404 * 304.88694 * 1 2 3 27 27 H 0.97002 * 120.00327 * 355.08091 * 5 3 2 28 28 H 1.09002 * 109.47312 * 65.14051 * 6 5 3 29 29 H 1.09001 * 109.47253 * 305.14034 * 6 5 3 30 30 H 0.97001 * 120.00167 * 180.02562 * 11 10 8 31 31 H 1.09003 * 117.49569 * 359.97438 * 16 7 6 32 32 H 1.08996 * 117.50247 * 145.02185 * 16 7 6 33 33 H 1.08996 * 117.49719 * 214.98077 * 17 7 6 34 34 H 1.08998 * 117.49837 * 359.97438 * 17 7 6 35 35 H 1.09001 * 108.87725 * 334.73774 * 18 2 1 36 36 H 1.08999 * 108.87470 * 93.17917 * 18 2 1 37 37 H 1.09000 * 108.81452 * 197.42770 * 19 18 2 38 38 H 1.09000 * 108.81278 * 79.14384 * 19 18 2 39 39 H 1.09002 * 108.87775 * 197.50495 * 20 19 18 40 40 H 1.09000 * 108.87508 * 79.05999 * 20 19 18 41 41 H 1.09001 * 109.62354 * 334.43354 * 21 20 19 42 42 H 1.08997 * 109.62485 * 213.86387 * 21 20 19 43 43 H 1.09001 * 108.89441 * 159.26360 * 22 21 20 44 44 H 1.08992 * 108.89893 * 40.76856 * 22 21 20 45 45 H 1.09007 * 108.89324 * 301.18683 * 23 22 21 46 46 H 1.09003 * 108.89535 * 182.69432 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0362 1.4194 0.0000 4 8 2.3467 1.9526 1.0441 5 7 2.1440 2.0964 -1.1604 6 6 2.5325 3.5088 -1.1511 7 6 2.4560 4.0683 -2.5731 8 6 3.6143 3.7196 -3.4720 9 1 3.4533 3.5806 -4.5308 10 6 4.8794 3.5779 -2.9425 11 7 5.8201 2.9778 -3.6385 12 14 5.2573 4.2385 -1.2365 13 1 5.1220 3.1450 -0.2411 14 1 6.6450 4.7664 -1.2063 15 1 4.3055 5.3293 -0.9061 16 6 1.8059 5.4408 -2.7583 17 6 1.0717 4.1786 -3.2154 18 6 2.0394 -0.7183 1.2202 19 6 3.3499 -0.1118 1.7572 20 6 4.3399 0.2591 0.6363 21 6 4.4043 -0.7862 -0.4441 22 6 3.4263 -0.3893 -1.5688 23 6 2.0482 -0.7350 -1.2531 24 1 -0.3633 0.4361 -0.9306 25 1 -0.3632 -1.0239 0.0875 26 1 -0.3634 0.5878 0.8429 27 1 1.9642 1.6484 -2.0018 28 1 3.5524 3.6027 -0.7781 29 1 1.8562 4.0675 -0.5041 30 1 6.7101 2.8778 -3.2659 31 1 1.4322 5.9451 -1.8671 32 1 2.2159 6.0920 -3.5303 33 1 0.9989 3.9994 -4.2880 34 1 0.2156 3.8522 -2.6250 35 1 1.2811 -0.6675 2.0016 36 1 2.2126 -1.7642 0.9671 37 1 3.8253 -0.8337 2.4212 38 1 3.1136 0.7858 2.3286 39 1 5.3330 0.3808 1.0690 40 1 4.0320 1.2060 0.1930 41 1 4.1175 -1.7546 -0.0342 42 1 5.4177 -0.8395 -0.8420 43 1 3.7172 -0.9009 -2.4863 44 1 3.4922 0.6865 -1.7306 45 1 1.9838 -1.8099 -1.0838 46 1 1.4157 -0.4746 -2.1018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431158965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:50 Heat of formation + Delta-G solvation = -1.320192 kcal Electronic energy + Delta-G solvation = -24673.694715 eV Core-core repulsion = 21564.540742 eV Total energy + Delta-G solvation = -3109.153973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09039 -37.56068 -36.45054 -33.97886 -33.42852 -32.29720 -31.61772 -27.61907 -27.25226 -25.27874 -24.33956 -23.31594 -21.68397 -21.23159 -19.62671 -19.48465 -18.62176 -16.66050 -16.16301 -15.72598 -15.55096 -15.15383 -14.75965 -14.34219 -13.99914 -13.46338 -13.17942 -13.04111 -12.90140 -12.77866 -12.68694 -12.32900 -12.09855 -12.04673 -11.70778 -11.34349 -11.07661 -10.93022 -10.63417 -10.50634 -10.44770 -10.31392 -10.11521 -10.03728 -9.89316 -9.77405 -9.60305 -9.39031 -8.97851 -8.82928 -8.39519 -8.08189 -6.25865 -4.17934 3.16432 3.27237 3.38761 3.40211 3.73159 4.31216 4.68144 4.70702 4.86277 4.95363 5.23787 5.31885 5.36855 5.41843 5.47559 5.60358 5.61794 5.64861 5.67350 5.74041 5.84382 5.86743 6.00547 6.09856 6.15534 6.16609 6.18416 6.20328 6.33266 6.36547 6.42576 6.46956 6.49489 6.57529 6.59745 6.65415 6.71079 6.85082 6.87338 6.93764 7.06781 7.19970 7.63388 8.16568 8.38338 8.79094 8.82479 9.39887 10.84988 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.008460 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.739814 B = 3309.028657 C = 3853.124397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C 0.527 3.473 4 O -0.549 6.549 5 N -0.707 5.707 6 C 0.146 3.854 7 C -0.004 4.004 8 C -0.492 4.492 9 H 0.079 0.921 10 C 0.085 3.915 11 N -0.878 5.878 12 Si 0.879 3.121 13 H -0.271 1.271 14 H -0.300 1.300 15 H -0.266 1.266 16 C -0.202 4.202 17 C -0.188 4.188 18 C -0.092 4.092 19 C -0.116 4.116 20 C -0.139 4.139 21 C -0.111 4.111 22 C -0.151 4.151 23 C -0.105 4.105 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.406 0.594 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.267 0.733 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -8.124 6.250 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.080 4.080 3 C 0.315 3.685 4 O -0.428 6.428 5 N -0.359 5.359 6 C 0.023 3.977 7 C -0.005 4.005 8 C -0.528 4.528 9 H 0.097 0.903 10 C -0.120 4.120 11 N -0.513 5.513 12 Si 0.711 3.289 13 H -0.198 1.198 14 H -0.228 1.228 15 H -0.191 1.191 16 C -0.240 4.240 17 C -0.226 4.226 18 C -0.130 4.130 19 C -0.153 4.153 20 C -0.177 4.177 21 C -0.148 4.148 22 C -0.188 4.188 23 C -0.142 4.142 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.243 0.757 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.085 0.915 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.921 -7.792 6.949 13.105 hybrid contribution 0.329 0.209 0.418 0.572 sum -7.593 -7.582 7.367 13.016 Atomic orbital electron populations 1.21821 0.92492 1.02353 1.02502 1.20615 0.96641 0.92913 0.97875 1.20221 0.76884 0.87707 0.83703 1.90590 1.50310 1.70194 1.31717 1.46241 1.68742 1.12029 1.08870 1.21309 0.98820 0.80704 0.96842 1.19537 0.93312 0.95501 0.92161 1.20271 0.89579 1.48074 0.94871 0.90270 1.24932 0.96254 0.93454 0.97334 1.69934 1.03762 1.38845 1.38764 0.87001 0.76434 0.80427 0.85022 1.19830 1.22847 1.19125 1.23134 1.06678 0.92132 1.02075 1.22780 0.95836 1.03816 1.00146 1.21184 0.97639 0.98534 0.95622 1.22033 0.93940 1.01250 0.98069 1.21739 0.98799 1.00621 0.96509 1.21273 0.99161 0.98493 0.95887 1.20897 0.94273 1.05009 0.98661 1.20580 0.97372 1.00145 0.96120 0.91997 0.91644 0.92165 0.75662 0.92597 0.92961 0.92354 0.91279 0.89395 0.89772 0.90934 0.92132 0.91970 0.93928 0.89279 0.93292 0.90034 0.92389 0.92284 0.91717 0.89082 0.91481 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.17 37.16 0.30 -1.26 16 2 C -0.08 -1.09 0.74 -156.27 -0.11 -1.21 16 3 C 0.53 9.60 3.31 -10.99 -0.04 9.56 16 4 O -0.55 -11.56 12.23 5.56 0.07 -11.49 16 5 N -0.71 -13.49 3.91 -60.30 -0.24 -13.73 16 6 C 0.15 3.18 4.63 -4.04 -0.02 3.16 16 7 C 0.00 -0.08 1.30 -155.66 -0.20 -0.29 16 8 C -0.49 -12.88 9.56 -34.44 -0.33 -13.21 16 9 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 10 C 0.08 2.32 5.40 -17.82 -0.10 2.22 16 11 N -0.88 -25.24 13.96 55.43 0.77 -24.47 16 12 Si 0.88 22.08 24.32 -169.99 -4.13 17.95 16 13 H -0.27 -6.88 6.36 56.52 0.36 -6.52 16 14 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 15 H -0.27 -6.53 6.81 56.52 0.38 -6.15 16 16 C -0.20 -4.09 9.88 -26.73 -0.26 -4.36 16 17 C -0.19 -3.59 9.93 -26.73 -0.27 -3.86 16 18 C -0.09 -1.25 4.62 -27.44 -0.13 -1.38 16 19 C -0.12 -1.84 5.06 -25.62 -0.13 -1.97 16 20 C -0.14 -2.52 5.13 -27.43 -0.14 -2.66 16 21 C -0.11 -1.76 5.61 -27.35 -0.15 -1.92 16 22 C -0.15 -2.43 5.05 -29.60 -0.15 -2.58 16 23 C -0.10 -1.39 3.80 -29.60 -0.11 -1.50 16 24 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.41 7.32 6.42 -40.82 -0.26 7.06 16 28 H 0.06 1.36 1.78 -51.93 -0.09 1.27 16 29 H 0.05 1.11 7.96 -51.93 -0.41 0.69 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 32 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.77 7.71 -51.93 -0.40 0.37 16 36 H 0.06 0.74 6.63 -51.93 -0.34 0.40 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.62 6.04 -51.93 -0.31 1.30 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.75 3.67 -51.93 -0.19 1.56 16 41 H 0.06 0.80 6.98 -51.93 -0.36 0.44 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.77 4.45 -51.93 -0.23 1.54 16 45 H 0.07 0.76 7.47 -51.92 -0.39 0.38 16 46 H 0.07 0.80 7.58 -51.93 -0.39 0.41 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -28.89 329.36 -8.05 -36.95 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.65 Total: 11.06 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -1.84 Total: -21.24 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.54 Total: -38.19 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.13 Total: 17.95 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.89 -8.05 -36.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431158965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.626 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds