Wall clock time and date at job start Tue Mar 31 2020 02:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.62620 * 2 1 4 4 O 1.21272 * 120.00418 * 96.19587 * 3 2 1 5 5 N 1.34777 * 119.99758 * 276.19196 * 3 2 1 6 6 C 1.46493 * 120.00098 * 175.07910 * 5 3 2 7 7 C 1.53007 * 109.47421 * 185.14050 * 6 5 3 8 8 C 1.50701 * 115.54912 * 281.31380 * 7 6 5 9 9 H 1.07999 * 119.99721 * 147.09272 * 8 7 6 10 10 C 1.37876 * 119.99789 * 327.08955 * 8 7 6 11 11 N 1.31514 * 119.99788 * 164.02303 * 10 8 7 12 12 Si 1.86801 * 120.00118 * 344.02250 * 10 8 7 13 13 H 1.48495 * 109.47049 * 95.82022 * 12 10 8 14 14 H 1.48500 * 109.47021 * 215.81814 * 12 10 8 15 15 H 1.48493 * 109.47058 * 335.81723 * 12 10 8 16 16 C 1.52996 * 117.50089 * 135.60313 * 7 6 5 17 17 C 1.53002 * 117.49648 * 66.97780 * 7 6 5 18 18 C 1.50476 * 109.78629 * 120.48263 * 2 1 3 19 19 C 1.54065 * 112.49795 * 213.95626 * 18 2 1 20 20 C 1.54070 * 112.81653 * 318.28440 * 19 18 2 21 21 C 1.50474 * 112.49871 * 318.28574 * 20 19 18 22 22 C 1.54234 * 108.52364 * 94.14960 * 21 20 19 23 23 C 1.45547 * 112.40510 * 280.01220 * 22 21 20 24 24 H 1.09002 * 109.47031 * 64.89033 * 1 2 3 25 25 H 1.08998 * 109.46697 * 184.88216 * 1 2 3 26 26 H 1.08996 * 109.47404 * 304.88694 * 1 2 3 27 27 H 0.97002 * 120.00327 * 355.08091 * 5 3 2 28 28 H 1.09002 * 109.47312 * 65.14051 * 6 5 3 29 29 H 1.09001 * 109.47253 * 305.14034 * 6 5 3 30 30 H 0.97001 * 120.00167 * 180.02562 * 11 10 8 31 31 H 1.09003 * 117.49569 * 359.97438 * 16 7 6 32 32 H 1.08996 * 117.50247 * 145.02185 * 16 7 6 33 33 H 1.08996 * 117.49719 * 214.98077 * 17 7 6 34 34 H 1.08998 * 117.49837 * 359.97438 * 17 7 6 35 35 H 1.09001 * 108.87725 * 334.73774 * 18 2 1 36 36 H 1.08999 * 108.87470 * 93.17917 * 18 2 1 37 37 H 1.09000 * 108.81452 * 197.42770 * 19 18 2 38 38 H 1.09000 * 108.81278 * 79.14384 * 19 18 2 39 39 H 1.09002 * 108.87775 * 197.50495 * 20 19 18 40 40 H 1.09000 * 108.87508 * 79.05999 * 20 19 18 41 41 H 1.09001 * 109.62354 * 334.43354 * 21 20 19 42 42 H 1.08997 * 109.62485 * 213.86387 * 21 20 19 43 43 H 1.09001 * 108.89441 * 159.26360 * 22 21 20 44 44 H 1.08992 * 108.89893 * 40.76856 * 22 21 20 45 45 H 1.09007 * 108.89324 * 301.18683 * 23 22 21 46 46 H 1.09003 * 108.89535 * 182.69432 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0362 1.4194 0.0000 4 8 2.3467 1.9526 1.0441 5 7 2.1440 2.0964 -1.1604 6 6 2.5325 3.5088 -1.1511 7 6 2.4560 4.0683 -2.5731 8 6 3.6143 3.7196 -3.4720 9 1 3.4533 3.5806 -4.5308 10 6 4.8794 3.5779 -2.9425 11 7 5.8201 2.9778 -3.6385 12 14 5.2573 4.2385 -1.2365 13 1 5.1220 3.1450 -0.2411 14 1 6.6450 4.7664 -1.2063 15 1 4.3055 5.3293 -0.9061 16 6 1.8059 5.4408 -2.7583 17 6 1.0717 4.1786 -3.2154 18 6 2.0394 -0.7183 1.2202 19 6 3.3499 -0.1118 1.7572 20 6 4.3399 0.2591 0.6363 21 6 4.4043 -0.7862 -0.4441 22 6 3.4263 -0.3893 -1.5688 23 6 2.0482 -0.7350 -1.2531 24 1 -0.3633 0.4361 -0.9306 25 1 -0.3632 -1.0239 0.0875 26 1 -0.3634 0.5878 0.8429 27 1 1.9642 1.6484 -2.0018 28 1 3.5524 3.6027 -0.7781 29 1 1.8562 4.0675 -0.5041 30 1 6.7101 2.8778 -3.2659 31 1 1.4322 5.9451 -1.8671 32 1 2.2159 6.0920 -3.5303 33 1 0.9989 3.9994 -4.2880 34 1 0.2156 3.8522 -2.6250 35 1 1.2811 -0.6675 2.0016 36 1 2.2126 -1.7642 0.9671 37 1 3.8253 -0.8337 2.4212 38 1 3.1136 0.7858 2.3286 39 1 5.3330 0.3808 1.0690 40 1 4.0320 1.2060 0.1930 41 1 4.1175 -1.7546 -0.0342 42 1 5.4177 -0.8395 -0.8420 43 1 3.7172 -0.9009 -2.4863 44 1 3.4922 0.6865 -1.7306 45 1 1.9838 -1.8099 -1.0838 46 1 1.4157 -0.4746 -2.1018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431158965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:48 Heat of formation + Delta-G solvation = -18.243734 kcal Electronic energy + Delta-G solvation = -24674.428575 eV Core-core repulsion = 21564.540742 eV Total energy + Delta-G solvation = -3109.887833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -42.39375 -39.17115 -37.88706 -35.42154 -34.63259 -34.38472 -32.89555 -29.03810 -28.60493 -27.17233 -25.51917 -24.56208 -23.19252 -22.61010 -21.30514 -20.86569 -20.13375 -18.45922 -17.80893 -17.13028 -16.97867 -16.65306 -16.14324 -15.62844 -15.50928 -15.14342 -14.99520 -14.39691 -14.18974 -14.12685 -14.00358 -13.83606 -13.49334 -13.19587 -13.04802 -12.85990 -12.58876 -12.48244 -12.17127 -12.14003 -11.91362 -11.64701 -11.48926 -11.45219 -11.32837 -11.26731 -11.21225 -11.03680 -10.69729 -10.49003 -10.14867 -9.68034 -8.40838 -6.31067 1.22526 1.30243 1.34209 1.80374 2.21780 2.31602 2.84359 3.46844 3.59594 3.64556 3.84522 3.92404 4.02357 4.11699 4.18956 4.21747 4.31498 4.40484 4.43892 4.47054 4.50341 4.52888 4.78035 4.82342 4.85187 4.90292 4.94418 4.99458 5.01851 5.05946 5.13681 5.21386 5.22027 5.23315 5.31484 5.35225 5.37682 5.39959 5.49371 5.57556 5.60846 5.63946 5.71905 6.26718 6.64126 6.76729 7.27597 7.41508 8.73676 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.008460 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.739814 B = 3309.028657 C = 3853.124397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 C 0.523 3.477 4 O -0.583 6.583 5 N -0.706 5.706 6 C 0.151 3.849 7 C -0.034 4.034 8 C -0.480 4.480 9 H 0.050 0.950 10 C 0.049 3.951 11 N -0.919 5.919 12 Si 0.930 3.070 13 H -0.287 1.287 14 H -0.309 1.309 15 H -0.257 1.257 16 C -0.196 4.196 17 C -0.157 4.157 18 C -0.092 4.092 19 C -0.112 4.112 20 C -0.141 4.141 21 C -0.107 4.107 22 C -0.149 4.149 23 C -0.102 4.102 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.410 0.590 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.196 -9.860 6.864 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.075 4.075 3 C 0.313 3.687 4 O -0.464 6.464 5 N -0.357 5.357 6 C 0.027 3.973 7 C -0.035 4.035 8 C -0.517 4.517 9 H 0.068 0.932 10 C -0.152 4.152 11 N -0.557 5.557 12 Si 0.763 3.237 13 H -0.216 1.216 14 H -0.238 1.238 15 H -0.182 1.182 16 C -0.235 4.235 17 C -0.194 4.194 18 C -0.129 4.129 19 C -0.149 4.149 20 C -0.178 4.178 21 C -0.144 4.144 22 C -0.186 4.186 23 C -0.140 4.140 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.248 0.752 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.812 -9.519 7.557 16.267 hybrid contribution 1.220 0.787 0.200 1.465 sum -9.592 -8.732 7.757 15.114 Atomic orbital electron populations 1.21836 0.90018 1.04367 1.02536 1.20706 0.98454 0.89687 0.98660 1.21085 0.75788 0.89225 0.82650 1.90587 1.51664 1.71375 1.32824 1.46208 1.68843 1.11059 1.09630 1.21051 0.97309 0.82644 0.96250 1.19417 0.93922 0.97949 0.92241 1.20408 0.90751 1.46429 0.94122 0.93150 1.25354 0.96485 0.94083 0.99263 1.70016 1.04161 1.41315 1.40181 0.86199 0.75624 0.79622 0.82304 1.21550 1.23790 1.18224 1.23167 1.05880 0.91634 1.02787 1.22817 0.94426 1.01686 1.00501 1.21253 0.96339 0.99622 0.95724 1.21954 0.95027 1.00715 0.97221 1.21739 0.98601 0.99782 0.97722 1.21263 0.98737 0.99217 0.95225 1.20860 0.96436 1.02491 0.98842 1.20593 0.95287 1.01928 0.96166 0.91479 0.88455 0.92882 0.75167 0.95459 0.92390 0.92594 0.89318 0.89821 0.89485 0.88128 0.90820 0.89024 0.91941 0.92163 0.94839 0.93688 0.89190 0.93602 0.91470 0.92995 0.88130 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.17 71.98 0.59 -1.89 16 2 C -0.07 -1.81 0.74 -53.32 -0.04 -1.85 16 3 C 0.52 18.57 3.31 87.66 0.29 18.86 16 4 O -0.58 -24.77 12.23 -3.01 -0.04 -24.80 16 5 N -0.71 -26.54 3.91 -463.07 -1.81 -28.35 16 6 C 0.15 6.55 4.63 86.38 0.40 6.95 16 7 C -0.03 -1.49 1.30 -52.93 -0.07 -1.56 16 8 C -0.48 -25.61 9.56 25.60 0.24 -25.36 16 9 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 10 C 0.05 2.74 5.40 84.65 0.46 3.20 16 11 N -0.92 -54.94 13.96 21.45 0.30 -54.64 16 12 Si 0.93 47.83 24.32 68.60 1.67 49.50 16 13 H -0.29 -15.34 6.36 99.48 0.63 -14.70 16 14 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 15 H -0.26 -12.62 6.81 99.48 0.68 -11.94 16 16 C -0.20 -7.56 9.88 30.59 0.30 -7.26 16 17 C -0.16 -5.57 9.93 30.60 0.30 -5.27 16 18 C -0.09 -2.17 4.62 30.14 0.14 -2.03 16 19 C -0.11 -3.42 5.06 31.32 0.16 -3.26 16 20 C -0.14 -5.14 5.13 30.14 0.15 -4.98 16 21 C -0.11 -3.30 5.61 30.20 0.17 -3.13 16 22 C -0.15 -4.60 5.05 28.74 0.15 -4.46 16 23 C -0.10 -2.35 3.80 28.74 0.11 -2.24 16 24 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 25 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.41 14.45 6.42 -92.71 -0.59 13.86 16 28 H 0.03 1.37 1.78 -2.39 0.00 1.37 16 29 H 0.06 2.41 7.96 -2.39 -0.02 2.39 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.09 3.08 8.09 -2.39 -0.02 3.06 16 32 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 35 H 0.07 1.58 7.71 -2.39 -0.02 1.56 16 36 H 0.09 1.67 6.63 -2.39 -0.02 1.65 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 2.20 6.04 -2.39 -0.01 2.19 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.04 1.99 3.67 -2.39 -0.01 1.98 16 41 H 0.09 2.18 6.98 -2.39 -0.02 2.16 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.05 2.04 4.45 -2.39 -0.01 2.03 16 45 H 0.10 1.71 7.47 -2.38 -0.02 1.70 16 46 H 0.08 1.63 7.58 -2.39 -0.02 1.61 16 Total: -1.00 -66.19 329.36 3.74 -62.45 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.27 Total: 30.14 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 3.35 Total: -34.29 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -1.51 Total: -82.99 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.80 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.67 Total: 49.50 kcal Total: -66.19 3.74 -62.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431158965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.206 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds