Wall clock time and date at job start Tue Mar 31 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31550 * 118.10277 * 2 1 4 4 C 1.47100 * 118.10700 * 0.37745 * 3 2 1 5 5 O 1.21616 * 120.00373 * 260.38642 * 4 3 2 6 6 N 1.34781 * 120.00173 * 80.38630 * 4 3 2 7 7 C 1.46493 * 120.00439 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47541 * 179.97438 * 7 6 4 9 9 C 1.52993 * 109.47320 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47277 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99952 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00264 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99759 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00075 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47030 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46973 * 119.99575 * 14 12 10 17 17 H 1.48498 * 109.47220 * 240.00004 * 14 12 10 18 18 C 1.50103 * 123.79216 * 180.39913 * 3 2 1 19 19 C 1.53011 * 110.12916 * 342.83269 * 18 3 2 20 20 C 1.53359 * 108.51225 * 49.74802 * 19 18 3 21 21 C 1.53005 * 109.62958 * 51.66884 * 20 19 18 22 22 C 1.52991 * 109.63356 * 172.25620 * 20 19 18 23 23 C 1.50091 * 118.10292 * 179.73407 * 2 1 3 24 24 H 1.09001 * 109.47095 * 354.89998 * 1 2 3 25 25 H 1.08996 * 109.46835 * 114.90237 * 1 2 3 26 26 H 1.08997 * 109.47235 * 234.89886 * 1 2 3 27 27 H 0.97007 * 119.99334 * 359.97438 * 6 4 3 28 28 H 1.09001 * 109.47307 * 299.99897 * 7 6 4 29 29 H 1.08998 * 109.47160 * 59.99736 * 7 6 4 30 30 H 1.09001 * 109.46932 * 300.00367 * 8 7 6 31 31 H 1.09006 * 109.46620 * 59.99806 * 8 7 6 32 32 H 1.09006 * 109.46997 * 299.99865 * 9 8 7 33 33 H 1.08998 * 109.47280 * 60.00039 * 9 8 7 34 34 H 0.96999 * 119.99888 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.35921 * 103.03291 * 18 3 2 36 36 H 1.08997 * 109.35776 * 222.76465 * 18 3 2 37 37 H 1.09004 * 109.62483 * 169.45444 * 19 18 3 38 38 H 1.09000 * 109.63108 * 289.84000 * 19 18 3 39 39 H 1.08998 * 109.47248 * 60.00075 * 21 20 19 40 40 H 1.08995 * 109.47152 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46962 * 300.00162 * 21 20 19 42 42 H 1.08999 * 109.47226 * 59.99725 * 22 20 19 43 43 H 1.08996 * 109.47470 * 180.02562 * 22 20 19 44 44 H 1.09004 * 109.47229 * 300.00481 * 22 20 19 45 45 H 1.08998 * 109.36185 * 283.05310 * 23 2 1 46 46 H 1.08998 * 109.35859 * 42.65285 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1267 1.1604 0.0000 4 6 1.3086 2.3829 0.0085 5 8 1.1105 2.9894 -1.0268 6 7 0.7785 2.8310 1.1639 7 6 -0.0367 4.0482 1.1724 8 6 -0.5127 4.3334 2.5982 9 6 -1.3646 5.6042 2.6069 10 6 -1.8329 5.8854 4.0114 11 1 -1.5514 5.2236 4.8172 12 6 -2.6216 6.9870 4.2676 13 7 -2.9647 7.7925 3.2863 14 14 -3.2027 7.3351 6.0084 15 1 -2.6838 6.2861 6.9225 16 1 -2.6992 8.6633 6.4419 17 1 -4.6872 7.3325 6.0446 18 6 3.6203 1.3092 -0.0087 19 6 4.2829 -0.0058 0.4070 20 6 3.6731 -1.1420 -0.4231 21 6 3.7360 -0.7839 -1.9093 22 6 4.4473 -2.4369 -0.1692 23 6 2.2140 -1.3239 0.0061 24 1 -0.3633 1.0236 0.0914 25 1 -0.3633 -0.4327 -0.9321 26 1 -0.3633 -0.5909 0.8407 27 1 0.9362 2.3471 1.9897 28 1 0.5593 4.8872 0.8133 29 1 -0.9005 3.9115 0.5218 30 1 -1.1088 3.4943 2.9569 31 1 0.3510 4.4699 3.2490 32 1 -0.7687 6.4435 2.2481 33 1 -2.2282 5.4672 1.9562 34 1 -3.5198 8.5673 3.4664 35 1 3.9507 1.5791 -1.0117 36 1 3.9093 2.0940 0.6904 37 1 5.3554 0.0495 0.2200 38 1 4.1050 -0.1865 1.4671 39 1 4.7751 -0.6377 -2.2041 40 1 3.3024 -1.5931 -2.4967 41 1 3.1757 0.1343 -2.0857 42 1 4.3919 -2.6919 0.8891 43 1 4.0121 -3.2425 -0.7606 44 1 5.4900 -2.2989 -0.4554 45 1 2.1794 -1.7475 1.0099 46 1 1.7171 -2.0022 -0.6875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448906204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:32 Heat of formation + Delta-G solvation = -66.895043 kcal Electronic energy + Delta-G solvation = -21918.928998 eV Core-core repulsion = 18806.931486 eV Total energy + Delta-G solvation = -3111.997512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56722 -38.75005 -35.35926 -34.41645 -33.21377 -32.12813 -31.10340 -27.82855 -27.57076 -27.14641 -26.26505 -23.38759 -22.93926 -21.19141 -20.57562 -19.43199 -17.78070 -16.42183 -16.26464 -15.76222 -15.60564 -15.07262 -14.72634 -14.44528 -14.41541 -14.28167 -13.84207 -13.32233 -13.15667 -12.72121 -12.59447 -12.40247 -12.28865 -12.17699 -12.02040 -11.83957 -11.80387 -11.70631 -11.55134 -10.92289 -10.84463 -10.79362 -10.71985 -10.57541 -10.45362 -9.86800 -9.80189 -9.32699 -9.09773 -8.85795 -8.74272 -8.37908 -6.02270 -4.05305 1.72552 2.80818 3.29575 3.36982 3.40358 3.50770 4.27347 4.40819 4.44587 4.48762 4.81141 4.90242 4.94676 5.09572 5.14807 5.26115 5.32093 5.33594 5.39708 5.46760 5.51465 5.54817 5.62801 5.65292 5.66844 5.73700 5.77664 5.80145 5.83613 5.92045 5.95027 5.98987 6.16629 6.17527 6.32962 6.50395 6.59821 6.65541 6.84619 7.00687 7.63535 7.74191 7.75948 7.96688 8.37027 8.42802 9.01650 9.58959 11.09100 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035320 B = 0.002811 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.555860 B = 9957.890856 C =10127.751615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.158 4.158 4 C 0.552 3.448 5 O -0.544 6.544 6 N -0.722 5.722 7 C 0.115 3.885 8 C -0.120 4.120 9 C 0.023 3.977 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.071 4.071 19 C -0.107 4.107 20 C -0.066 4.066 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.071 4.071 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.399 0.601 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.439 -21.277 -6.518 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 C -0.161 4.161 4 C 0.338 3.662 5 O -0.422 6.422 6 N -0.373 5.373 7 C -0.008 4.008 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.109 4.109 19 C -0.144 4.144 20 C -0.066 4.066 21 C -0.203 4.203 22 C -0.197 4.197 23 C -0.108 4.108 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.173 -20.644 -7.296 26.082 hybrid contribution -0.421 0.157 1.320 1.394 sum 13.752 -20.487 -5.976 25.389 Atomic orbital electron populations 1.21155 0.92021 1.03544 1.02520 1.21318 0.95720 0.93929 0.97199 1.20672 0.96139 0.92547 1.06712 1.18555 0.79163 0.84552 0.83923 1.90809 1.60685 1.58500 1.32211 1.46346 1.52425 1.28630 1.09866 1.21657 0.94055 0.85301 0.99772 1.21880 1.00103 1.01354 0.92445 1.19034 0.94352 0.90696 0.97337 1.21243 1.31248 1.09589 0.93888 0.92602 1.25036 0.96220 0.96189 0.97067 1.69978 1.37083 1.14951 1.31278 0.86527 0.78469 0.78167 0.84778 1.19754 1.20989 1.20999 1.20269 0.89810 0.98204 1.02582 1.21676 0.99476 0.93570 0.99704 1.20636 0.94607 0.95397 0.96006 1.21948 1.01807 1.02159 0.94391 1.21847 0.99915 0.96429 1.01556 1.20529 0.94162 0.94051 1.02061 0.91213 0.91060 0.91011 0.76723 0.91779 0.91839 0.92760 0.92735 0.96282 0.96289 0.92979 0.90085 0.90869 0.91314 0.91454 0.92703 0.92865 0.91578 0.92571 0.92615 0.92527 0.90157 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.76 36.01 0.35 -1.10 16 2 C -0.08 -0.84 5.48 -101.49 -0.56 -1.40 16 3 C -0.16 -1.90 4.86 -103.17 -0.50 -2.40 16 4 C 0.55 8.64 4.94 -12.66 -0.06 8.58 16 5 O -0.54 -10.85 17.11 5.26 0.09 -10.76 16 6 N -0.72 -10.78 5.07 -61.49 -0.31 -11.09 16 7 C 0.11 2.07 5.67 -4.04 -0.02 2.04 16 8 C -0.12 -2.36 5.27 -26.73 -0.14 -2.51 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 11 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C -0.07 -0.72 5.16 -28.17 -0.15 -0.87 16 19 C -0.11 -0.83 4.93 -26.54 -0.13 -0.96 16 20 C -0.07 -0.49 0.79 -154.24 -0.12 -0.61 16 21 C -0.15 -1.18 7.81 37.16 0.29 -0.89 16 22 C -0.14 -0.83 8.49 37.15 0.32 -0.52 16 23 C -0.07 -0.56 4.58 -28.09 -0.13 -0.69 16 24 H 0.07 0.92 5.56 -51.93 -0.29 0.63 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.40 4.98 8.46 -40.82 -0.35 4.64 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 0.86 6.92 -51.93 -0.36 0.50 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.67 5.68 -51.93 -0.29 0.37 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 46 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -32.11 362.76 -8.88 -40.99 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.44 Total: -0.64 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -1.40 Total: -14.27 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.42 Total: -37.29 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.11 -8.88 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448906204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.909 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds