Wall clock time and date at job start Tue Mar 31 2020 02:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31550 * 118.10277 * 2 1 4 4 C 1.47100 * 118.10700 * 0.37745 * 3 2 1 5 5 O 1.21616 * 120.00373 * 260.38642 * 4 3 2 6 6 N 1.34781 * 120.00173 * 80.38630 * 4 3 2 7 7 C 1.46493 * 120.00439 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47541 * 179.97438 * 7 6 4 9 9 C 1.52993 * 109.47320 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47277 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99952 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00264 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99759 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00075 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47030 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46973 * 119.99575 * 14 12 10 17 17 H 1.48498 * 109.47220 * 240.00004 * 14 12 10 18 18 C 1.50103 * 123.79216 * 180.39913 * 3 2 1 19 19 C 1.53011 * 110.12916 * 342.83269 * 18 3 2 20 20 C 1.53359 * 108.51225 * 49.74802 * 19 18 3 21 21 C 1.53005 * 109.62958 * 51.66884 * 20 19 18 22 22 C 1.52991 * 109.63356 * 172.25620 * 20 19 18 23 23 C 1.50091 * 118.10292 * 179.73407 * 2 1 3 24 24 H 1.09001 * 109.47095 * 354.89998 * 1 2 3 25 25 H 1.08996 * 109.46835 * 114.90237 * 1 2 3 26 26 H 1.08997 * 109.47235 * 234.89886 * 1 2 3 27 27 H 0.97007 * 119.99334 * 359.97438 * 6 4 3 28 28 H 1.09001 * 109.47307 * 299.99897 * 7 6 4 29 29 H 1.08998 * 109.47160 * 59.99736 * 7 6 4 30 30 H 1.09001 * 109.46932 * 300.00367 * 8 7 6 31 31 H 1.09006 * 109.46620 * 59.99806 * 8 7 6 32 32 H 1.09006 * 109.46997 * 299.99865 * 9 8 7 33 33 H 1.08998 * 109.47280 * 60.00039 * 9 8 7 34 34 H 0.96999 * 119.99888 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.35921 * 103.03291 * 18 3 2 36 36 H 1.08997 * 109.35776 * 222.76465 * 18 3 2 37 37 H 1.09004 * 109.62483 * 169.45444 * 19 18 3 38 38 H 1.09000 * 109.63108 * 289.84000 * 19 18 3 39 39 H 1.08998 * 109.47248 * 60.00075 * 21 20 19 40 40 H 1.08995 * 109.47152 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46962 * 300.00162 * 21 20 19 42 42 H 1.08999 * 109.47226 * 59.99725 * 22 20 19 43 43 H 1.08996 * 109.47470 * 180.02562 * 22 20 19 44 44 H 1.09004 * 109.47229 * 300.00481 * 22 20 19 45 45 H 1.08998 * 109.36185 * 283.05310 * 23 2 1 46 46 H 1.08998 * 109.35859 * 42.65285 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1267 1.1604 0.0000 4 6 1.3086 2.3829 0.0085 5 8 1.1105 2.9894 -1.0268 6 7 0.7785 2.8310 1.1639 7 6 -0.0367 4.0482 1.1724 8 6 -0.5127 4.3334 2.5982 9 6 -1.3646 5.6042 2.6069 10 6 -1.8329 5.8854 4.0114 11 1 -1.5514 5.2236 4.8172 12 6 -2.6216 6.9870 4.2676 13 7 -2.9647 7.7925 3.2863 14 14 -3.2027 7.3351 6.0084 15 1 -2.6838 6.2861 6.9225 16 1 -2.6992 8.6633 6.4419 17 1 -4.6872 7.3325 6.0446 18 6 3.6203 1.3092 -0.0087 19 6 4.2829 -0.0058 0.4070 20 6 3.6731 -1.1420 -0.4231 21 6 3.7360 -0.7839 -1.9093 22 6 4.4473 -2.4369 -0.1692 23 6 2.2140 -1.3239 0.0061 24 1 -0.3633 1.0236 0.0914 25 1 -0.3633 -0.4327 -0.9321 26 1 -0.3633 -0.5909 0.8407 27 1 0.9362 2.3471 1.9897 28 1 0.5593 4.8872 0.8133 29 1 -0.9005 3.9115 0.5218 30 1 -1.1088 3.4943 2.9569 31 1 0.3510 4.4699 3.2490 32 1 -0.7687 6.4435 2.2481 33 1 -2.2282 5.4672 1.9562 34 1 -3.5198 8.5673 3.4664 35 1 3.9507 1.5791 -1.0117 36 1 3.9093 2.0940 0.6904 37 1 5.3554 0.0495 0.2200 38 1 4.1050 -0.1865 1.4671 39 1 4.7751 -0.6377 -2.2041 40 1 3.3024 -1.5931 -2.4967 41 1 3.1757 0.1343 -2.0857 42 1 4.3919 -2.6919 0.8891 43 1 4.0121 -3.2425 -0.7606 44 1 5.4900 -2.2989 -0.4554 45 1 2.1794 -1.7475 1.0099 46 1 1.7171 -2.0022 -0.6875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448906204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:30 Heat of formation + Delta-G solvation = -85.505613 kcal Electronic energy + Delta-G solvation = -21919.736013 eV Core-core repulsion = 18806.931486 eV Total energy + Delta-G solvation = -3112.804527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.56200 -39.75795 -36.98256 -35.40074 -35.01447 -33.01068 -32.76934 -29.08275 -28.16399 -27.99913 -27.55234 -25.04846 -23.79833 -22.40649 -22.30230 -20.29638 -18.88224 -18.46880 -17.31853 -16.94329 -16.78666 -16.45120 -16.00047 -15.70185 -15.42406 -15.27336 -14.67128 -14.38290 -14.28736 -14.07939 -13.78490 -13.57427 -13.36984 -13.30574 -13.13212 -12.82400 -12.78457 -12.62425 -12.57711 -12.50168 -12.37073 -12.25529 -11.71361 -11.70335 -11.48948 -11.37646 -11.22850 -11.08604 -10.68350 -10.57800 -10.15190 -9.72278 -8.20999 -6.32727 0.83697 1.41039 1.41241 1.54615 1.55888 2.25453 2.42142 3.12833 3.58266 3.61671 3.90622 4.00026 4.09727 4.14663 4.17820 4.20618 4.45886 4.48389 4.49121 4.51066 4.64048 4.78003 4.81383 4.89865 4.91152 4.94124 4.94333 4.98272 4.99877 5.06753 5.12037 5.13028 5.15705 5.28917 5.33030 5.38746 5.42483 5.50093 5.56380 5.61612 5.67642 5.81592 5.82124 6.20271 6.51059 6.84830 7.18075 7.37076 8.91478 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035320 B = 0.002811 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.555860 B = 9957.890856 C =10127.751615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.178 4.178 4 C 0.553 3.447 5 O -0.594 6.594 6 N -0.710 5.710 7 C 0.128 3.872 8 C -0.100 4.100 9 C 0.024 3.976 10 C -0.540 4.540 11 H 0.067 0.933 12 C -0.004 4.004 13 N -0.936 5.936 14 Si 0.969 3.031 15 H -0.258 1.258 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.069 4.069 19 C -0.101 4.101 20 C -0.065 4.065 21 C -0.145 4.145 22 C -0.136 4.136 23 C -0.071 4.071 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.414 0.586 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.067 0.933 32 H -0.009 1.009 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.441 -24.066 -4.620 28.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.181 4.181 4 C 0.342 3.658 5 O -0.476 6.476 6 N -0.361 5.361 7 C 0.004 3.996 8 C -0.137 4.137 9 C -0.014 4.014 10 C -0.578 4.578 11 H 0.085 0.915 12 C -0.202 4.202 13 N -0.576 5.576 14 Si 0.793 3.207 15 H -0.181 1.181 16 H -0.206 1.206 17 H -0.205 1.205 18 C -0.106 4.106 19 C -0.139 4.139 20 C -0.065 4.065 21 C -0.203 4.203 22 C -0.193 4.193 23 C -0.107 4.107 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.251 0.749 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.009 0.991 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.196 -23.471 -5.369 28.471 hybrid contribution -0.774 1.015 0.659 1.437 sum 14.422 -22.455 -4.710 27.100 Atomic orbital electron populations 1.21213 0.92388 1.02144 1.03900 1.21603 0.95625 0.94683 0.94313 1.20556 0.96606 0.91107 1.09819 1.19208 0.78485 0.85143 0.82940 1.90776 1.62488 1.60370 1.33944 1.46138 1.51652 1.27558 1.10733 1.21253 0.93709 0.86250 0.98358 1.21583 0.99709 0.98857 0.93595 1.18943 0.93861 0.92585 0.95999 1.21699 1.31231 1.09892 0.94953 0.91500 1.26046 0.96362 0.95991 1.01791 1.70123 1.37955 1.15630 1.33920 0.85345 0.77904 0.78307 0.79155 1.18124 1.20552 1.20531 1.20270 0.88663 0.99747 1.01954 1.21674 0.99892 0.92106 1.00184 1.20642 0.94546 0.96117 0.95162 1.21938 1.01846 1.01125 0.95359 1.21803 0.99851 0.95395 1.02252 1.20643 0.94197 0.92349 1.03555 0.94130 0.90368 0.88711 0.74927 0.93404 0.93353 0.91312 0.91394 0.99054 0.98999 0.92790 0.91234 0.91323 0.90132 0.90567 0.92103 0.92270 0.94080 0.91706 0.92055 0.92131 0.88138 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.76 71.24 0.70 -2.11 16 2 C -0.06 -1.17 5.48 -17.20 -0.09 -1.26 16 3 C -0.18 -4.19 4.86 -18.29 -0.09 -4.28 16 4 C 0.55 17.75 4.94 86.57 0.43 18.18 16 5 O -0.59 -24.88 17.11 -4.08 -0.07 -24.95 16 6 N -0.71 -21.28 5.07 -466.72 -2.37 -23.65 16 7 C 0.13 4.77 5.67 86.38 0.49 5.26 16 8 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 11 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 12 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 13 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 14 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 15 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 C -0.07 -1.35 5.16 29.66 0.15 -1.20 16 19 C -0.10 -1.33 4.93 30.72 0.15 -1.18 16 20 C -0.06 -0.78 0.79 -52.01 -0.04 -0.82 16 21 C -0.15 -2.13 7.81 71.98 0.56 -1.56 16 22 C -0.14 -1.13 8.49 71.98 0.61 -0.52 16 23 C -0.07 -0.89 4.58 29.71 0.14 -0.75 16 24 H 0.04 1.06 5.56 -2.39 -0.01 1.05 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.41 9.87 8.46 -92.70 -0.78 9.08 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 32 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.07 1.50 6.92 -2.39 -0.02 1.48 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.04 0.81 5.68 -2.39 -0.01 0.80 16 42 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.95 8.11 -2.39 -0.02 0.94 16 46 H 0.09 0.96 8.12 -2.39 -0.02 0.94 16 Total: -1.00 -71.39 362.76 4.03 -67.36 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.15 Total: 15.14 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 4.01 Total: -22.54 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.08 Total: -81.02 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.07 Total: -24.95 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.39 4.03 -67.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448906204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.144 kcal (2) G-P(sol) polarization free energy of solvation -71.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds