Wall clock time and date at job start Tue Mar 31 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47406 * 270.00464 * 3 2 1 5 5 H 1.48500 * 109.47180 * 30.00653 * 3 2 1 6 6 H 1.48503 * 109.47130 * 150.00420 * 3 2 1 7 7 C 1.37886 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99575 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99746 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47139 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.48545 * 111.00099 * 69.87209 * 11 10 9 13 13 C 1.53881 * 104.46080 * 158.85243 * 12 11 10 14 14 C 1.52660 * 110.09028 * 94.20934 * 13 12 11 15 15 C 1.53177 * 109.28540 * 66.44846 * 14 13 12 16 16 O 1.42914 * 109.31154 * 56.71061 * 15 14 13 17 17 C 1.42911 * 114.15233 * 298.25009 * 16 15 14 18 18 C 1.52589 * 110.18855 * 216.17089 * 13 12 11 19 19 C 1.53646 * 105.59040 * 335.33926 * 13 12 11 20 20 H 1.09004 * 112.45393 * 239.04966 * 19 13 12 21 21 C 1.54676 * 108.99059 * 112.99987 * 19 13 12 22 22 C 1.54819 * 103.00614 * 211.18957 * 21 19 13 23 23 C 1.54195 * 104.21399 * 37.96619 * 22 21 19 24 24 C 1.48429 * 110.99874 * 185.88486 * 11 10 9 25 25 H 1.08998 * 111.87161 * 324.70615 * 24 11 10 26 26 H 0.96993 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47825 * 59.99912 * 9 7 2 28 28 H 1.09002 * 109.46979 * 299.99621 * 9 7 2 29 29 H 1.09004 * 109.47219 * 59.99700 * 10 9 7 30 30 H 1.08994 * 109.46712 * 299.99968 * 10 9 7 31 31 H 1.09004 * 110.44122 * 40.10816 * 12 11 10 32 32 H 1.09006 * 110.44180 * 277.59735 * 12 11 10 33 33 H 1.09002 * 109.50764 * 306.49541 * 14 13 12 34 34 H 1.08997 * 109.50618 * 186.40295 * 14 13 12 35 35 H 1.09004 * 109.50222 * 176.65433 * 15 14 13 36 36 H 1.08992 * 109.50295 * 296.75596 * 15 14 13 37 37 H 1.08995 * 109.49112 * 181.65828 * 17 16 15 38 38 H 1.08996 * 109.49022 * 301.73127 * 17 16 15 39 39 H 1.08999 * 109.46769 * 173.60257 * 18 13 12 40 40 H 1.09002 * 109.53533 * 53.52663 * 18 13 12 41 41 H 1.09005 * 110.70397 * 92.81449 * 21 19 13 42 42 H 1.08991 * 110.86246 * 329.64550 * 21 19 13 43 43 H 1.08998 * 110.48386 * 279.28288 * 22 21 19 44 44 H 1.09001 * 110.47968 * 156.64846 * 22 21 19 45 45 H 1.09001 * 110.00236 * 216.37988 * 23 22 21 46 46 H 1.08997 * 110.03872 * 95.04446 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 0.8309 -5.1571 -1.3017 13 6 0.5919 -6.6763 -1.3554 14 6 -0.8049 -7.0061 -0.8351 15 6 -1.8510 -6.4341 -1.7967 16 8 -1.6232 -6.9555 -3.1076 17 6 -0.3530 -6.6075 -3.6627 18 6 0.7606 -7.1858 -2.7838 19 6 1.6581 -7.2947 -0.4379 20 1 2.3044 -7.9966 -0.9650 21 6 0.9610 -7.9230 0.7916 22 6 2.0150 -7.7554 1.9131 23 6 2.6441 -6.3748 1.6382 24 6 2.4386 -6.0841 0.1422 25 1 3.3844 -5.9084 -0.3703 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8720 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 1.4727 -4.8435 -2.1250 32 1 -0.1179 -4.6213 -1.3323 33 1 -0.9388 -6.5653 0.1528 34 1 -0.9231 -8.0877 -0.7701 35 1 -2.8482 -6.7183 -1.4605 36 1 -1.7699 -5.3474 -1.8181 37 1 -0.2716 -7.0172 -4.6694 38 1 -0.2585 -5.5224 -3.7025 39 1 0.7016 -8.2742 -2.7906 40 1 1.7299 -6.8714 -3.1708 41 1 0.7485 -8.9778 0.6169 42 1 0.0469 -7.3828 1.0377 43 1 2.7701 -8.5387 1.8471 44 1 1.5356 -7.7680 2.8920 45 1 3.7088 -6.3972 1.8709 46 1 2.1476 -5.6120 2.2379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451620183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:00 Heat of formation + Delta-G solvation = -54.368421 kcal Electronic energy + Delta-G solvation = -23595.826878 eV Core-core repulsion = 20484.372560 eV Total energy + Delta-G solvation = -3111.454317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.92343 -38.16504 -35.11880 -34.08893 -32.76018 -31.21873 -29.72771 -28.27959 -27.03904 -25.90641 -24.13452 -23.52136 -22.67780 -20.28165 -20.18254 -19.19768 -18.41314 -16.67260 -16.11328 -15.88902 -15.78935 -14.83499 -14.72033 -14.51728 -14.37833 -13.85259 -13.80318 -13.41853 -12.94797 -12.84531 -12.31912 -12.25094 -11.76867 -11.52193 -11.33717 -11.28052 -11.20432 -10.95533 -10.93664 -10.84597 -10.64266 -10.60055 -10.47725 -10.26686 -10.04433 -9.81430 -9.80988 -9.35955 -9.23982 -9.11925 -8.34245 -7.86148 -5.99949 -4.02342 3.31221 3.37619 3.40816 3.96637 4.36263 4.47613 4.53799 4.55819 4.85147 5.01071 5.03266 5.09234 5.23199 5.31080 5.31442 5.36071 5.50102 5.60490 5.63348 5.68620 5.69999 5.75576 5.76304 5.87004 5.87723 5.96229 6.00877 6.06411 6.11045 6.15836 6.18517 6.22669 6.34065 6.36140 6.41684 6.50300 6.55266 6.64555 6.97830 7.28101 7.44146 7.53054 7.76917 7.88754 8.07866 8.43474 9.04927 9.61361 11.11380 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.005229 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.032140 B = 5353.897450 C = 6400.179051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.032 3.968 10 C 0.053 3.947 11 N -0.500 5.500 12 C 0.045 3.955 13 C -0.059 4.059 14 C -0.135 4.135 15 C 0.054 3.946 16 O -0.387 6.387 17 C 0.060 3.940 18 C -0.140 4.140 19 C -0.082 4.082 20 H 0.079 0.921 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.111 4.111 24 C 0.058 3.942 25 H 0.051 0.949 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.019 0.981 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 -17.607 -2.236 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.075 4.075 11 N -0.224 5.224 12 C -0.083 4.083 13 C -0.059 4.059 14 C -0.173 4.173 15 C -0.023 4.023 16 O -0.306 6.306 17 C -0.017 4.017 18 C -0.179 4.179 19 C -0.101 4.101 20 H 0.098 0.902 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.051 4.051 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.249 -17.542 -1.874 17.644 hybrid contribution 1.443 1.255 -0.573 1.997 sum 1.692 -16.287 -2.446 16.556 Atomic orbital electron populations 1.69967 1.06007 1.26547 1.50685 1.24985 0.94818 0.99130 0.95315 0.86614 0.79871 0.83570 0.78057 1.20726 1.21179 1.19907 1.21199 0.92939 0.91129 1.50834 0.92896 1.19018 0.93860 0.90057 0.97627 1.22494 0.96918 0.89154 0.98910 1.65489 1.25245 1.01836 1.29794 1.23174 1.00133 0.93581 0.91416 1.20941 0.95267 0.95636 0.94090 1.22286 0.93800 1.01223 0.99947 1.22765 0.98817 0.98273 0.82412 1.87870 1.35172 1.76065 1.31451 1.22583 0.83195 0.99452 0.96489 1.22194 0.99313 1.01096 0.95247 1.22613 0.95706 0.96263 0.95540 0.90249 1.22748 0.99267 0.99653 0.94080 1.22308 0.97944 0.96881 0.98683 1.22087 0.99726 0.97368 0.95765 1.23210 0.94516 0.91463 0.95935 0.93075 0.93015 0.96797 0.95817 0.92117 0.96246 0.94224 0.89875 0.89325 0.91357 0.89125 0.92431 0.89321 0.92821 0.91267 0.91150 0.92467 0.89410 0.92518 0.91980 0.92744 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.83 5.03 -27.88 -0.14 0.69 16 10 C 0.05 1.11 4.71 -3.82 -0.02 1.09 16 11 N -0.50 -8.88 4.78 -221.53 -1.06 -9.94 16 12 C 0.04 0.74 3.81 -2.45 -0.01 0.73 16 13 C -0.06 -0.76 0.67 -154.10 -0.10 -0.87 16 14 C -0.14 -1.67 3.53 -26.81 -0.09 -1.76 16 15 C 0.05 0.69 6.64 37.25 0.25 0.94 16 16 O -0.39 -5.30 10.75 -35.23 -0.38 -5.68 16 17 C 0.06 0.72 6.65 37.26 0.25 0.97 16 18 C -0.14 -1.63 4.67 -26.84 -0.13 -1.75 16 19 C -0.08 -1.03 3.48 -88.19 -0.31 -1.33 16 20 H 0.08 0.91 7.82 -51.93 -0.41 0.51 16 21 C -0.12 -1.38 5.07 -24.89 -0.13 -1.51 16 22 C -0.12 -1.37 6.83 -25.15 -0.17 -1.54 16 23 C -0.11 -1.52 6.46 -25.70 -0.17 -1.69 16 24 C 0.06 0.85 3.13 -65.25 -0.20 0.65 16 25 H 0.05 0.78 7.98 -51.93 -0.41 0.36 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.01 0.38 7.26 -51.93 -0.38 0.00 16 28 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.28 8.08 -51.93 -0.42 0.87 16 30 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 31 H 0.04 0.68 7.46 -51.93 -0.39 0.29 16 32 H 0.08 1.50 5.81 -51.93 -0.30 1.20 16 33 H 0.09 1.17 6.31 -51.93 -0.33 0.84 16 34 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.69 7.56 -51.93 -0.39 0.30 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.09 5.07 -51.93 -0.26 0.82 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.24 7.88 -51.93 -0.41 0.83 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -29.90 337.29 -10.20 -40.10 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.18 Total: -1.15 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.38 Total: -18.95 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.32 Total: -36.11 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.38 Total: -5.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.90 -10.20 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451620183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.273 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds