Wall clock time and date at job start Tue Mar 31 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.29443 * 117.96488 * 2 1 4 4 C 1.50699 * 117.95965 * 0.48721 * 3 2 1 5 5 C 1.50063 * 124.08113 * 180.47095 * 3 2 1 6 6 C 1.53025 * 110.14567 * 342.86799 * 5 3 2 7 7 H 1.09006 * 109.63824 * 289.54004 * 6 5 3 8 8 C 1.50695 * 109.64603 * 169.12202 * 6 5 3 9 9 O 1.21274 * 119.99977 * 265.00564 * 8 6 5 10 10 N 1.34781 * 119.99862 * 85.00335 * 8 6 5 11 11 C 1.46493 * 120.00207 * 4.56641 * 10 8 6 12 12 C 1.50705 * 109.47163 * 266.70361 * 11 10 8 13 13 H 1.07999 * 119.99705 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99804 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99588 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00296 * 0.02562 * 14 12 11 17 17 H 1.48491 * 109.47152 * 89.99785 * 16 14 12 18 18 H 1.48500 * 109.46762 * 209.99709 * 16 14 12 19 19 H 1.48500 * 109.46821 * 329.99148 * 16 14 12 20 20 C 1.46507 * 119.99887 * 184.56012 * 10 8 6 21 21 C 1.52991 * 109.47209 * 295.85576 * 20 10 8 22 22 C 1.53005 * 109.46693 * 55.85417 * 20 10 8 23 23 C 1.53394 * 108.61703 * 49.32454 * 6 5 3 24 24 C 1.50070 * 117.96127 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.47330 * 62.53328 * 1 2 3 26 26 H 1.09004 * 109.46961 * 182.52956 * 1 2 3 27 27 H 1.08996 * 109.47297 * 302.53156 * 1 2 3 28 28 H 1.09003 * 109.47610 * 275.30592 * 4 3 2 29 29 H 1.09006 * 109.47470 * 35.30121 * 4 3 2 30 30 H 1.09000 * 109.47618 * 155.30416 * 4 3 2 31 31 H 1.08997 * 109.36306 * 222.66198 * 5 3 2 32 32 H 1.09003 * 109.24975 * 103.00083 * 5 3 2 33 33 H 1.09004 * 109.47333 * 26.70721 * 11 10 8 34 34 H 1.09001 * 109.47004 * 146.70426 * 11 10 8 35 35 H 0.96996 * 119.99697 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.47230 * 175.84688 * 20 10 8 37 37 H 1.09002 * 109.47511 * 57.88647 * 21 20 10 38 38 H 1.09000 * 109.47371 * 177.89068 * 21 20 10 39 39 H 1.09005 * 109.47200 * 297.88542 * 21 20 10 40 40 H 1.09000 * 109.46991 * 64.09893 * 22 20 10 41 41 H 1.09000 * 109.46910 * 184.10431 * 22 20 10 42 42 H 1.09000 * 109.46910 * 304.09889 * 22 20 10 43 43 H 1.09009 * 109.63679 * 52.36323 * 23 6 5 44 44 H 1.09001 * 109.64225 * 172.98509 * 23 6 5 45 45 H 1.08999 * 109.35425 * 283.07027 * 24 2 1 46 46 H 1.08989 * 109.36028 * 42.79943 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2696 2.3915 0.0113 5 6 3.6060 1.3032 -0.0102 6 6 4.2793 -0.0073 0.4031 7 1 4.1086 -0.1881 1.4644 8 6 5.7599 0.0774 0.1354 9 8 6.2142 -0.3551 -0.9025 10 7 6.5792 0.6338 1.0495 11 6 6.0466 1.0653 2.3442 12 6 5.6680 2.5222 2.2713 13 1 5.8096 3.0716 1.3524 14 6 5.1400 3.1534 3.3776 15 7 4.8101 4.4249 3.3141 16 14 4.8945 2.2030 4.9669 17 1 6.1190 2.3074 5.8003 18 1 3.7404 2.7702 5.7095 19 1 4.6286 0.7758 4.6541 20 6 8.0025 0.8071 0.7484 21 6 8.6566 -0.5643 0.5698 22 6 8.1561 1.6172 -0.5404 23 6 3.6713 -1.1508 -0.4190 24 6 2.2106 -1.3255 0.0006 25 1 -0.3634 0.4740 -0.9119 26 1 -0.3633 -1.0267 0.0454 27 1 -0.3633 0.5526 0.8664 28 1 0.9796 2.6434 -1.0088 29 1 0.3758 2.2202 0.6113 30 1 1.8426 3.2139 0.4397 31 1 3.8898 2.0909 0.6876 32 1 3.9314 1.5755 -1.0143 33 1 5.1655 0.4728 2.5904 34 1 6.8054 0.9252 3.1141 35 1 4.4382 4.8689 4.0922 36 1 8.4859 1.3361 1.5697 37 1 8.1488 -1.1082 -0.2268 38 1 9.7070 -0.4348 0.3089 39 1 8.5801 -1.1273 1.5000 40 1 7.7550 2.6194 -0.3896 41 1 9.2117 1.6841 -0.8039 42 1 7.6111 1.1251 -1.3460 43 1 3.7177 -0.9043 -1.4798 44 1 4.2225 -2.0718 -0.2293 45 1 2.1745 -1.7532 1.0025 46 1 1.7136 -1.9987 -0.6977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572002252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:23 Heat of formation + Delta-G solvation = -45.151328 kcal Electronic energy + Delta-G solvation = -23695.204364 eV Core-core repulsion = 20584.149730 eV Total energy + Delta-G solvation = -3111.054634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.95568 -38.14184 -35.44633 -33.63606 -32.72832 -31.72381 -30.98745 -27.65861 -27.04572 -26.64477 -25.98537 -22.94312 -22.59614 -22.07862 -20.42451 -17.87907 -17.14118 -16.62084 -16.03379 -15.38675 -14.69675 -14.60242 -14.31588 -14.20724 -13.65058 -13.43565 -13.34418 -13.01119 -12.66333 -12.58139 -12.46803 -12.10631 -11.99245 -11.76227 -11.70081 -11.59833 -11.46629 -11.35643 -11.22681 -10.95346 -10.84745 -10.66465 -10.59488 -10.31476 -10.20209 -10.00880 -9.86528 -9.55157 -8.75854 -8.61113 -8.10524 -7.69675 -6.22161 -4.22032 2.59094 3.17065 3.24995 3.26988 3.38097 3.86824 4.26441 4.96869 5.06055 5.09023 5.24669 5.38144 5.46854 5.59127 5.66043 5.67489 5.69257 5.79735 5.82574 5.86913 5.89448 5.99709 6.04999 6.09980 6.12082 6.16063 6.20345 6.22736 6.32979 6.38269 6.43463 6.45543 6.52509 6.56014 6.62690 6.73773 6.79361 6.89052 6.90402 7.07846 7.42401 7.49844 7.52046 8.17322 8.45358 8.82839 9.00918 9.38067 10.89883 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.008770 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.699484 B = 3192.045818 C = 4736.303526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.155 4.155 3 C -0.102 4.102 4 C -0.124 4.124 5 C -0.078 4.078 6 C -0.100 4.100 7 H 0.092 0.908 8 C 0.526 3.474 9 O -0.566 6.566 10 N -0.586 5.586 11 C 0.205 3.795 12 C -0.534 4.534 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.889 5.889 16 Si 0.867 3.133 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.148 3.852 21 C -0.165 4.165 22 C -0.166 4.166 23 C -0.098 4.098 24 C -0.074 4.074 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 -8.317 -4.139 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.155 4.155 3 C -0.102 4.102 4 C -0.181 4.181 5 C -0.115 4.115 6 C -0.121 4.121 7 H 0.110 0.890 8 C 0.314 3.686 9 O -0.447 6.447 10 N -0.316 5.316 11 C 0.083 3.917 12 C -0.572 4.572 13 H 0.099 0.901 14 C -0.125 4.125 15 N -0.526 5.526 16 Si 0.694 3.306 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.189 1.189 20 C 0.045 3.955 21 C -0.224 4.224 22 C -0.224 4.224 23 C -0.136 4.136 24 C -0.111 4.111 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.353 -8.363 -4.534 10.087 hybrid contribution -0.158 -0.164 1.192 1.214 sum -3.511 -8.527 -3.342 9.809 Atomic orbital electron populations 1.20862 0.93248 1.01347 1.01400 1.20549 0.95107 0.94442 1.05416 1.20729 0.95563 0.94427 0.99489 1.21008 0.99273 0.96563 1.01248 1.20477 0.90544 0.97646 1.02806 1.21303 0.91764 0.97204 1.01840 0.88982 1.20390 0.88407 0.76785 0.82988 1.90516 1.77540 1.49686 1.26918 1.48034 1.07621 1.58858 1.17114 1.19900 0.94562 0.96662 0.80548 1.21337 1.42632 0.93187 1.00079 0.90101 1.24842 0.94716 0.94638 0.98314 1.69884 1.42458 1.09806 1.30495 0.86986 0.78398 0.80897 0.84340 1.20056 1.20928 1.18898 1.20829 0.81410 0.95349 0.97954 1.22204 0.99972 0.97917 1.02258 1.22158 1.01026 1.00475 0.98740 1.21424 0.94379 0.97531 1.00294 1.20323 0.94957 0.94737 1.01078 0.92289 0.92904 0.91940 0.92124 0.91953 0.91217 0.86659 0.91530 0.94565 0.95614 0.92431 0.89884 0.90789 0.92662 0.93385 0.92401 0.92997 0.90576 0.91259 0.91949 0.91531 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 8.65 36.00 0.31 -1.05 16 2 C -0.16 -2.30 5.84 -100.94 -0.59 -2.89 16 3 C -0.10 -1.69 5.84 -100.94 -0.59 -2.27 16 4 C -0.12 -1.88 9.14 36.00 0.33 -1.55 16 5 C -0.08 -1.46 5.08 -28.18 -0.14 -1.60 16 6 C -0.10 -1.84 1.93 -91.56 -0.18 -2.01 16 7 H 0.09 1.74 5.97 -51.93 -0.31 1.43 16 8 C 0.53 10.57 6.18 -10.99 -0.07 10.50 16 9 O -0.57 -12.02 12.44 5.56 0.07 -11.95 16 10 N -0.59 -11.89 2.41 -167.47 -0.40 -12.29 16 11 C 0.20 4.46 4.00 -5.20 -0.02 4.44 16 12 C -0.53 -13.45 7.96 -34.44 -0.27 -13.73 16 13 H 0.08 2.27 7.97 -52.49 -0.42 1.85 16 14 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -24.97 13.96 55.43 0.77 -24.20 16 16 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 20 C 0.15 2.72 3.27 -67.93 -0.22 2.50 16 21 C -0.17 -2.67 9.21 37.15 0.34 -2.33 16 22 C -0.17 -2.98 9.12 37.16 0.34 -2.64 16 23 C -0.10 -1.57 4.72 -26.54 -0.13 -1.69 16 24 C -0.07 -1.03 5.68 -28.20 -0.16 -1.19 16 25 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 26 H 0.05 0.56 7.93 -51.93 -0.41 0.15 16 27 H 0.06 0.74 6.89 -51.93 -0.36 0.39 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.85 6.12 -51.93 -0.32 0.53 16 30 H 0.07 1.17 7.98 -51.93 -0.41 0.75 16 31 H 0.12 2.51 5.83 -51.93 -0.30 2.21 16 32 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.04 0.79 4.85 -51.93 -0.25 0.54 16 34 H 0.03 0.55 7.46 -51.93 -0.39 0.17 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 37 H 0.07 1.32 6.27 -51.93 -0.33 0.99 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.48 5.91 -51.93 -0.31 1.17 16 43 H 0.07 1.16 8.10 -51.92 -0.42 0.74 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.80 8.14 -51.94 -0.42 0.38 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -27.46 347.79 -8.15 -35.61 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.02 Total: 6.17 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -1.14 Total: -13.54 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.37 Total: -36.49 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.07 Total: -11.95 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.46 -8.15 -35.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572002252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.539 kcal (2) G-P(sol) polarization free energy of solvation -27.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds