Wall clock time and date at job start Tue Mar 31 2020 01:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46945 * 269.99210 * 3 2 1 5 5 H 1.48497 * 109.47479 * 29.99351 * 3 2 1 6 6 H 1.48504 * 109.47204 * 149.99681 * 3 2 1 7 7 C 1.37878 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00352 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99507 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00020 * 180.02562 * 13 12 11 16 16 C 1.46496 * 119.99544 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47059 * 180.02562 * 16 15 13 18 18 C 1.52995 * 112.85136 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.50036 * 18.28763 * 18 17 16 20 20 C 1.53001 * 117.49794 * 309.66027 * 18 17 16 21 21 C 1.53781 * 113.61525 * 48.80030 * 17 16 15 22 22 C 1.53958 * 87.02279 * 220.05337 * 21 17 16 23 23 C 1.53785 * 113.61141 * 311.19316 * 17 16 15 24 24 H 0.96999 * 119.99896 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 27 27 H 1.08992 * 109.47056 * 59.99637 * 10 9 7 28 28 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 29 29 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 30 30 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 31 31 H 1.09001 * 109.46832 * 59.99979 * 12 11 10 32 32 H 1.09000 * 109.47611 * 300.00276 * 12 11 10 33 33 H 0.96994 * 119.99756 * 0.02562 * 15 13 12 34 34 H 1.08996 * 109.47366 * 299.99598 * 16 15 13 35 35 H 1.08992 * 109.47635 * 60.00246 * 16 15 13 36 36 H 1.09004 * 115.54943 * 163.99813 * 18 17 16 37 37 H 1.08994 * 117.50020 * 359.97438 * 19 18 17 38 38 H 1.09002 * 117.49881 * 145.02045 * 19 18 17 39 39 H 1.09005 * 117.49983 * 214.97908 * 20 18 17 40 40 H 1.08998 * 117.49942 * 0.02562 * 20 18 17 41 41 H 1.09002 * 113.61161 * 334.56995 * 21 17 16 42 42 H 1.08997 * 113.61265 * 105.47150 * 21 17 16 43 43 H 1.08997 * 113.53378 * 270.81204 * 22 21 17 44 44 H 1.09000 * 113.66810 * 139.93084 * 22 21 17 45 45 H 1.08998 * 113.61944 * 254.52973 * 23 17 16 46 46 H 1.08999 * 113.61190 * 25.43610 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0009 12 6 6.0615 -4.0790 0.0015 13 6 7.5686 -4.0791 0.0008 14 8 8.1749 -3.0287 0.0004 15 7 8.2424 -5.2463 0.0006 16 6 9.7074 -5.2462 0.0005 17 6 10.2174 -6.6887 -0.0004 18 6 11.7447 -6.7788 0.0000 19 6 12.5257 -5.5344 0.4271 20 6 12.5013 -5.9550 -1.0439 21 6 9.5477 -7.5783 -1.0611 22 6 9.5330 -8.6939 -0.0002 23 6 9.5479 -7.5794 1.0594 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8889 27 1 3.6585 -3.1502 -0.8891 28 1 3.6579 -3.1505 0.8907 29 1 5.9149 -2.1228 0.8909 30 1 5.9148 -2.1227 -0.8891 31 1 5.6981 -4.5931 -0.8883 32 1 5.6982 -4.5926 0.8916 33 1 7.7574 -6.0862 0.0005 34 1 10.0706 -4.7323 -0.8895 35 1 10.0708 -4.7325 0.8904 36 1 12.1583 -7.7504 0.2706 37 1 11.9515 -4.6514 0.7073 38 1 13.4533 -5.6872 0.9789 39 1 13.4129 -6.3843 -1.4598 40 1 11.9110 -5.3485 -1.7307 41 1 8.5535 -7.2386 -1.3512 42 1 10.1880 -7.7957 -1.9160 43 1 10.4340 -9.3074 -0.0013 44 1 8.6172 -9.2849 0.0005 45 1 10.1883 -7.7979 1.9140 46 1 8.5537 -7.2401 1.3500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:28 Heat of formation + Delta-G solvation = -18.679541 kcal Electronic energy + Delta-G solvation = -21413.519886 eV Core-core repulsion = 18303.613155 eV Total energy + Delta-G solvation = -3109.906731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93607 -39.22535 -36.33809 -35.07573 -34.26983 -32.55757 -30.35991 -28.51207 -26.13790 -25.87964 -24.15250 -22.68490 -22.16085 -21.94047 -20.15915 -20.00144 -18.36868 -17.11692 -16.77793 -16.52853 -15.88554 -15.63494 -15.20515 -14.72932 -14.38450 -14.17848 -14.06722 -13.68534 -13.39420 -13.00774 -12.63141 -12.42083 -12.26778 -12.06238 -11.99802 -11.72932 -11.70933 -11.11405 -11.08895 -10.97907 -10.84078 -10.71288 -10.51589 -10.34777 -10.15585 -9.95360 -9.79555 -9.62654 -9.39716 -9.14469 -9.09952 -8.47734 -5.99008 -3.96332 2.70584 3.09934 3.31792 3.36765 3.43669 3.50015 3.98182 4.19248 4.22513 4.43863 4.51696 4.53834 4.59993 4.72799 4.76334 4.87966 5.18873 5.24882 5.25907 5.30993 5.31678 5.35674 5.36190 5.44777 5.45070 5.53353 5.55038 5.67695 5.71434 5.77950 5.81081 5.93800 6.00369 6.05563 6.17977 6.32498 6.44769 6.70837 6.84894 7.01444 7.39938 7.40931 7.53182 7.86580 8.24119 8.60078 9.06058 9.64489 11.14515 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034683 B = 0.002580 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.126395 B =10849.008108 C =11424.326973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.736 5.736 16 C 0.131 3.869 17 C -0.063 4.063 18 C -0.126 4.126 19 C -0.182 4.182 20 C -0.177 4.177 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.133 4.133 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.398 0.602 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.238 -19.447 -0.124 31.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.299 3.701 14 O -0.414 6.414 15 N -0.391 5.391 16 C 0.008 3.992 17 C -0.063 4.063 18 C -0.145 4.145 19 C -0.219 4.219 20 C -0.214 4.214 21 C -0.171 4.171 22 C -0.178 4.178 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.234 0.766 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 25.524 -18.552 -0.122 31.554 hybrid contribution 0.175 0.450 -0.026 0.483 sum 25.699 -18.102 -0.148 31.435 Atomic orbital electron populations 1.69922 1.06305 1.26809 1.51536 1.25045 0.94737 0.99230 0.94632 0.86771 0.80439 0.83538 0.78535 1.20324 1.21471 1.18887 1.21188 0.89679 0.94371 1.50446 0.91115 1.19580 0.96891 0.92524 0.96311 1.21474 0.91727 0.99900 1.00909 1.21477 0.97167 0.92860 1.02883 1.21777 0.90263 1.01742 1.04134 1.21074 0.90871 0.83142 0.75059 1.90698 1.70661 1.31364 1.48634 1.46195 1.06922 1.09006 1.76988 1.21165 0.80244 0.95602 1.02220 1.21506 0.93207 0.93516 0.98060 1.21859 0.91079 0.96378 1.05145 1.23095 1.02177 0.98803 0.97777 1.22979 1.02269 1.03739 0.92443 1.23064 1.00948 0.96068 0.96993 1.22850 1.02268 0.96347 0.96307 1.23035 1.01046 0.96055 0.96932 0.92833 0.96617 0.97067 0.92885 0.92851 0.91815 0.91820 0.89056 0.89037 0.76563 0.91498 0.91248 0.87352 0.88147 0.88716 0.88740 0.88564 0.89767 0.90953 0.90146 0.91234 0.90999 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.57 13.96 55.43 0.77 -27.79 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 12 C -0.14 -1.78 5.70 -27.88 -0.16 -1.94 16 13 C 0.51 6.91 7.83 -10.98 -0.09 6.83 16 14 O -0.54 -9.58 15.98 5.56 0.09 -9.49 16 15 N -0.74 -7.19 4.71 -60.30 -0.28 -7.47 16 16 C 0.13 1.23 4.05 -4.04 -0.02 1.21 16 17 C -0.06 -0.42 1.14 -153.69 -0.17 -0.60 16 18 C -0.13 -0.80 5.16 -90.62 -0.47 -1.27 16 19 C -0.18 -1.23 9.80 -26.73 -0.26 -1.49 16 20 C -0.18 -1.15 9.94 -26.73 -0.27 -1.42 16 21 C -0.13 -0.82 6.97 -25.83 -0.18 -1.00 16 22 C -0.14 -0.75 7.80 -25.82 -0.20 -0.95 16 23 C -0.13 -0.81 6.96 -25.91 -0.18 -0.99 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.40 2.89 5.80 -40.82 -0.24 2.66 16 34 H 0.07 0.71 7.09 -51.93 -0.37 0.34 16 35 H 0.07 0.73 6.86 -51.93 -0.36 0.37 16 36 H 0.11 0.61 7.90 -51.93 -0.41 0.20 16 37 H 0.10 0.79 6.20 -51.93 -0.32 0.46 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.69 7.23 -51.93 -0.38 0.32 16 41 H 0.08 0.52 6.63 -51.93 -0.34 0.18 16 42 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 43 H 0.08 0.40 7.94 -51.93 -0.41 -0.02 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 46 H 0.08 0.53 6.63 -51.93 -0.34 0.18 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -33.67 359.79 -9.63 -43.29 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.16 Total: -1.88 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.79 Total: -19.95 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.49 Total: -35.27 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.67 -9.63 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.613 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds