Wall clock time and date at job start Tue Mar 31 2020 01:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46945 * 269.99210 * 3 2 1 5 5 H 1.48497 * 109.47479 * 29.99351 * 3 2 1 6 6 H 1.48504 * 109.47204 * 149.99681 * 3 2 1 7 7 C 1.37878 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00352 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99507 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00020 * 180.02562 * 13 12 11 16 16 C 1.46496 * 119.99544 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47059 * 180.02562 * 16 15 13 18 18 C 1.52995 * 112.85136 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.50036 * 18.28763 * 18 17 16 20 20 C 1.53001 * 117.49794 * 309.66027 * 18 17 16 21 21 C 1.53781 * 113.61525 * 48.80030 * 17 16 15 22 22 C 1.53958 * 87.02279 * 220.05337 * 21 17 16 23 23 C 1.53785 * 113.61141 * 311.19316 * 17 16 15 24 24 H 0.96999 * 119.99896 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 27 27 H 1.08992 * 109.47056 * 59.99637 * 10 9 7 28 28 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 29 29 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 30 30 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 31 31 H 1.09001 * 109.46832 * 59.99979 * 12 11 10 32 32 H 1.09000 * 109.47611 * 300.00276 * 12 11 10 33 33 H 0.96994 * 119.99756 * 0.02562 * 15 13 12 34 34 H 1.08996 * 109.47366 * 299.99598 * 16 15 13 35 35 H 1.08992 * 109.47635 * 60.00246 * 16 15 13 36 36 H 1.09004 * 115.54943 * 163.99813 * 18 17 16 37 37 H 1.08994 * 117.50020 * 359.97438 * 19 18 17 38 38 H 1.09002 * 117.49881 * 145.02045 * 19 18 17 39 39 H 1.09005 * 117.49983 * 214.97908 * 20 18 17 40 40 H 1.08998 * 117.49942 * 0.02562 * 20 18 17 41 41 H 1.09002 * 113.61161 * 334.56995 * 21 17 16 42 42 H 1.08997 * 113.61265 * 105.47150 * 21 17 16 43 43 H 1.08997 * 113.53378 * 270.81204 * 22 21 17 44 44 H 1.09000 * 113.66810 * 139.93084 * 22 21 17 45 45 H 1.08998 * 113.61944 * 254.52973 * 23 17 16 46 46 H 1.08999 * 113.61190 * 25.43610 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0009 12 6 6.0615 -4.0790 0.0015 13 6 7.5686 -4.0791 0.0008 14 8 8.1749 -3.0287 0.0004 15 7 8.2424 -5.2463 0.0006 16 6 9.7074 -5.2462 0.0005 17 6 10.2174 -6.6887 -0.0004 18 6 11.7447 -6.7788 0.0000 19 6 12.5257 -5.5344 0.4271 20 6 12.5013 -5.9550 -1.0439 21 6 9.5477 -7.5783 -1.0611 22 6 9.5330 -8.6939 -0.0002 23 6 9.5479 -7.5794 1.0594 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8889 27 1 3.6585 -3.1502 -0.8891 28 1 3.6579 -3.1505 0.8907 29 1 5.9149 -2.1228 0.8909 30 1 5.9148 -2.1227 -0.8891 31 1 5.6981 -4.5931 -0.8883 32 1 5.6982 -4.5926 0.8916 33 1 7.7574 -6.0862 0.0005 34 1 10.0706 -4.7323 -0.8895 35 1 10.0708 -4.7325 0.8904 36 1 12.1583 -7.7504 0.2706 37 1 11.9515 -4.6514 0.7073 38 1 13.4533 -5.6872 0.9789 39 1 13.4129 -6.3843 -1.4598 40 1 11.9110 -5.3485 -1.7307 41 1 8.5535 -7.2386 -1.3512 42 1 10.1880 -7.7957 -1.9160 43 1 10.4340 -9.3074 -0.0013 44 1 8.6172 -9.2849 0.0005 45 1 10.1883 -7.7979 1.9140 46 1 8.5537 -7.2401 1.3500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588162091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:27 Heat of formation + Delta-G solvation = -38.126773 kcal Electronic energy + Delta-G solvation = -21414.363181 eV Core-core repulsion = 18303.613155 eV Total energy + Delta-G solvation = -3110.750027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60607 -40.19445 -36.87707 -36.68207 -35.21655 -34.59931 -31.99317 -29.49303 -27.40069 -26.60789 -24.99997 -23.57416 -23.14587 -22.68514 -21.73870 -21.15171 -18.98301 -18.83941 -18.01810 -17.39977 -16.99593 -16.36422 -16.21853 -15.95751 -15.86538 -15.13337 -14.83872 -14.76915 -14.64034 -14.20388 -13.83565 -13.68054 -13.50363 -13.47076 -12.87001 -12.71354 -12.66287 -12.33841 -12.30047 -12.07483 -11.75750 -11.60466 -11.52432 -11.44956 -11.35599 -11.34579 -11.26322 -10.86784 -10.82593 -10.76070 -10.68896 -10.05607 -8.29802 -6.32745 1.34610 1.36082 1.49040 1.65040 2.20098 2.35833 2.80026 3.05591 3.45311 3.66124 3.72242 3.84196 3.95505 3.98314 4.03182 4.10458 4.14552 4.18462 4.29060 4.57974 4.63094 4.65616 4.67443 4.76291 4.80378 4.82752 4.84561 4.87005 4.90631 5.02693 5.13721 5.14467 5.17841 5.20372 5.21990 5.24693 5.27569 5.36517 5.51924 5.55295 5.60837 5.65764 5.68716 6.29529 6.53114 6.75175 7.26109 7.32086 8.86786 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034683 B = 0.002580 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.126395 B =10849.008108 C =11424.326973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.093 4.093 11 C -0.097 4.097 12 C -0.132 4.132 13 C 0.510 3.490 14 O -0.588 6.588 15 N -0.717 5.717 16 C 0.133 3.867 17 C -0.061 4.061 18 C -0.121 4.121 19 C -0.190 4.190 20 C -0.179 4.179 21 C -0.134 4.134 22 C -0.131 4.131 23 C -0.134 4.134 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.414 0.586 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.857 -20.856 -0.120 34.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.171 4.171 13 C 0.299 3.701 14 O -0.468 6.468 15 N -0.371 5.371 16 C 0.009 3.991 17 C -0.062 4.062 18 C -0.139 4.139 19 C -0.227 4.227 20 C -0.216 4.216 21 C -0.171 4.171 22 C -0.169 4.169 23 C -0.171 4.171 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.252 0.748 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 27.150 -20.024 -0.119 33.736 hybrid contribution -0.366 0.823 -0.029 0.901 sum 26.784 -19.201 -0.148 32.956 Atomic orbital electron populations 1.70059 1.08101 1.28077 1.52900 1.25992 0.95624 1.03387 0.94308 0.85695 0.79373 0.78645 0.79176 1.19225 1.20701 1.17658 1.21544 0.92092 0.93226 1.49933 0.94420 1.19582 0.93916 0.95922 0.96059 1.21336 0.93664 0.96718 1.01387 1.21278 0.94840 0.95743 1.01706 1.21690 0.89688 0.99160 1.06582 1.21187 0.91195 0.83247 0.74503 1.90686 1.71550 1.33242 1.51289 1.46020 1.07246 1.08710 1.75109 1.21157 0.79722 0.97313 1.00873 1.21524 0.93663 0.91769 0.99205 1.21924 0.90674 0.96695 1.04601 1.23099 1.02667 0.98635 0.98271 1.23003 1.02735 1.03736 0.92113 1.23085 1.00802 0.96181 0.97050 1.22822 1.03083 0.95955 0.95007 1.23059 1.00938 0.96090 0.97016 0.92511 0.96837 0.96950 0.92389 0.92400 0.93104 0.93037 0.86568 0.86558 0.74751 0.92963 0.92645 0.85919 0.89740 0.87660 0.87480 0.89687 0.89754 0.90909 0.89381 0.90435 0.90787 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 46.32 27.47 68.60 1.88 48.21 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 7 C -0.53 -31.43 9.66 25.60 0.25 -31.19 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.62 5.15 30.59 0.16 -3.46 16 11 C -0.10 -3.21 4.50 30.59 0.14 -3.07 16 12 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 13 C 0.51 13.18 7.83 87.66 0.69 13.87 16 14 O -0.59 -20.98 15.98 -3.02 -0.05 -21.02 16 15 N -0.72 -12.88 4.71 -463.07 -2.18 -15.06 16 16 C 0.13 2.41 4.05 86.38 0.35 2.76 16 17 C -0.06 -0.73 1.14 -51.65 -0.06 -0.79 16 18 C -0.12 -1.34 5.16 -10.80 -0.06 -1.40 16 19 C -0.19 -2.46 9.80 30.60 0.30 -2.16 16 20 C -0.18 -2.17 9.94 30.60 0.30 -1.86 16 21 C -0.13 -1.35 6.97 31.18 0.22 -1.13 16 22 C -0.13 -1.03 7.80 31.18 0.24 -0.78 16 23 C -0.13 -1.32 6.96 31.12 0.22 -1.11 16 24 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 25 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 26 H 0.01 0.59 7.57 -2.39 -0.02 0.58 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 30 H 0.05 1.81 8.10 -2.38 -0.02 1.79 16 31 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.41 4.95 5.80 -92.71 -0.54 4.41 16 34 H 0.05 1.12 7.09 -2.39 -0.02 1.10 16 35 H 0.06 1.18 6.86 -2.39 -0.02 1.16 16 36 H 0.12 1.06 7.90 -2.38 -0.02 1.04 16 37 H 0.08 1.37 6.20 -2.39 -0.01 1.35 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.08 1.22 7.23 -2.39 -0.02 1.20 16 41 H 0.08 0.84 6.63 -2.39 -0.02 0.83 16 42 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16 43 H 0.09 0.59 7.94 -2.39 -0.02 0.57 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.73 8.10 -2.39 -0.02 0.71 16 46 H 0.08 0.84 6.63 -2.39 -0.02 0.82 16 Total: -1.00 -73.72 359.79 3.80 -69.92 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.35 Total: 11.74 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.50 Total: -33.27 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -1.88 Total: -75.58 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.21 kcal Total: -73.72 3.80 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.797 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds