Wall clock time and date at job start Tue Mar 31 2020 00:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00186 * 2 1 4 4 H 1.48503 * 109.46921 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47103 * 299.99860 * 3 2 1 6 6 H 1.48497 * 109.47100 * 60.00210 * 3 2 1 7 7 C 1.37880 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00361 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47074 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47290 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46885 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00352 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99598 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00048 * 0.02562 * 15 13 12 17 17 C 1.53006 * 109.46726 * 269.99755 * 16 15 13 18 18 C 1.53001 * 117.49866 * 243.62197 * 17 16 15 19 19 C 1.53000 * 117.49497 * 174.99789 * 17 16 15 20 20 C 1.46504 * 119.99550 * 179.97438 * 15 13 12 21 21 C 1.52995 * 109.46979 * 269.99999 * 20 15 13 22 22 C 1.53009 * 117.49573 * 243.62535 * 21 20 15 23 23 C 1.53003 * 117.49703 * 175.00483 * 21 20 15 24 24 H 0.96999 * 119.99314 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46546 * 59.99890 * 9 7 2 26 26 H 1.08995 * 109.47035 * 300.00432 * 9 7 2 27 27 H 1.09002 * 109.47576 * 60.00394 * 10 9 7 28 28 H 1.08995 * 109.47388 * 300.00089 * 10 9 7 29 29 H 1.09001 * 109.47107 * 60.00032 * 11 10 9 30 30 H 1.08995 * 109.47037 * 300.00244 * 11 10 9 31 31 H 1.09001 * 109.47031 * 59.99970 * 12 11 10 32 32 H 1.08996 * 109.46808 * 300.00358 * 12 11 10 33 33 H 1.08995 * 109.47463 * 150.00191 * 16 15 13 34 34 H 1.09000 * 109.47136 * 29.99756 * 16 15 13 35 35 H 1.08996 * 115.55031 * 29.33683 * 17 16 15 36 36 H 1.08996 * 117.49555 * 359.97438 * 18 17 16 37 37 H 1.08995 * 117.49577 * 145.02406 * 18 17 16 38 38 H 1.08998 * 117.49694 * 214.97781 * 19 17 16 39 39 H 1.08998 * 117.50118 * 359.97438 * 19 17 16 40 40 H 1.08991 * 109.47330 * 30.00143 * 20 15 13 41 41 H 1.09000 * 109.46366 * 150.00251 * 20 15 13 42 42 H 1.08997 * 115.55756 * 29.33159 * 21 20 15 43 43 H 1.08996 * 117.49733 * 359.97438 * 22 21 20 44 44 H 1.08997 * 117.49544 * 145.02763 * 22 21 20 45 45 H 1.08997 * 117.49954 * 214.98046 * 23 21 20 46 46 H 1.08997 * 117.49911 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4743 -6.1501 -0.0005 13 6 1.7207 -7.4552 -0.0018 14 8 0.5079 -7.4551 -0.0026 15 7 2.3946 -8.6224 -0.0010 16 6 3.8596 -8.6225 0.0017 17 6 4.3722 -8.6220 -1.4399 18 6 5.1769 -9.8378 -1.9039 19 6 5.8827 -8.5037 -1.6525 20 6 1.6620 -9.8911 -0.0016 21 6 1.4054 -10.3326 1.4406 22 6 2.0559 -11.6368 1.9064 23 6 0.5476 -11.5813 1.6552 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6045 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8538 -5.0446 -0.8914 30 1 0.8532 -5.0451 0.8885 31 1 3.1003 -6.0925 0.8899 32 1 3.1016 -6.0923 -0.8900 33 1 4.2220 -9.5126 0.5158 34 1 4.2220 -7.7327 0.5165 35 1 3.7219 -8.1400 -2.1699 36 1 5.3415 -10.6376 -1.1821 37 1 5.0561 -10.1559 -2.9394 38 1 6.2261 -7.9442 -2.5226 39 1 6.5112 -8.4257 -0.7654 40 1 0.7102 -9.7608 -0.5165 41 1 2.2516 -10.6508 -0.5148 42 1 1.3133 -9.5275 2.1695 43 1 2.6662 -12.1804 1.1853 44 1 2.3919 -11.6897 2.9420 45 1 -0.1085 -11.5977 2.5253 46 1 0.1658 -12.0879 0.7689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588368402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:38 Heat of formation + Delta-G solvation = -13.582972 kcal Electronic energy + Delta-G solvation = -21527.153563 eV Core-core repulsion = 18417.467836 eV Total energy + Delta-G solvation = -3109.685727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16465 -37.79155 -37.51257 -34.91941 -34.65339 -32.59194 -30.01941 -28.29830 -26.66362 -25.05148 -22.75630 -22.63102 -22.28576 -21.24613 -20.90563 -19.95574 -18.92915 -16.92596 -16.79772 -16.10348 -15.95958 -15.53985 -14.99734 -14.73041 -14.41570 -14.38666 -13.66281 -13.30314 -13.01622 -12.91616 -12.50845 -12.37159 -11.93577 -11.83737 -11.79745 -11.75092 -11.59787 -11.53339 -10.97594 -10.78267 -10.72367 -10.51377 -10.46106 -10.37625 -10.26296 -10.17558 -9.67673 -9.57539 -9.18133 -8.93838 -8.80261 -8.28443 -5.93077 -3.95354 2.73548 2.84126 3.34562 3.41653 3.45668 3.47826 3.56968 4.33538 4.50333 4.51481 4.54957 4.58207 4.66676 4.74155 4.80311 5.00985 5.05653 5.20950 5.29456 5.34067 5.35080 5.36765 5.39208 5.42362 5.50513 5.58438 5.60920 5.62842 5.80355 5.82888 5.84030 5.95290 5.99565 6.18568 6.33859 6.46565 6.60144 6.88355 7.05841 7.23226 7.34630 7.77274 7.93450 8.08862 8.27382 8.50735 9.12684 9.68186 11.18328 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.003064 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.311043 B = 9135.522565 C =10216.060235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.513 3.487 14 O -0.531 6.531 15 N -0.614 5.614 16 C 0.142 3.858 17 C -0.174 4.174 18 C -0.180 4.180 19 C -0.173 4.173 20 C 0.147 3.853 21 C -0.164 4.164 22 C -0.182 4.182 23 C -0.175 4.175 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.167 -25.540 -0.025 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.303 3.697 14 O -0.407 6.407 15 N -0.348 5.348 16 C 0.018 3.982 17 C -0.193 4.193 18 C -0.217 4.217 19 C -0.210 4.210 20 C 0.024 3.976 21 C -0.184 4.184 22 C -0.219 4.219 23 C -0.212 4.212 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.349 -25.410 -0.026 27.075 hybrid contribution 0.538 0.867 -0.001 1.020 sum 9.886 -24.543 -0.027 26.459 Atomic orbital electron populations 1.69990 1.06044 1.26356 1.51090 1.25047 0.94837 0.99225 0.95512 0.86561 0.80092 0.83962 0.77530 1.19776 1.21070 1.21064 1.21327 0.93012 0.91200 1.50171 0.92715 1.19098 0.94072 0.91292 0.97294 1.21639 0.99040 0.94008 1.00015 1.21462 0.97042 0.92783 1.02874 1.21836 1.00035 0.92051 1.03793 1.21139 0.88216 0.85512 0.74870 1.90702 1.14153 1.87310 1.48491 1.47984 1.06287 1.05835 1.74656 1.21157 0.79491 1.03425 0.94122 1.22874 0.94566 1.03219 0.98681 1.23035 1.04663 0.91678 1.02323 1.22946 0.94128 1.00293 1.03657 1.20950 0.97735 0.84931 0.93947 1.22773 1.04858 0.91936 0.98804 1.23054 0.95732 1.00895 1.02231 1.22911 0.93563 1.01303 1.03448 0.93124 0.96604 0.96614 0.93529 0.93517 0.91871 0.91890 0.89291 0.89146 0.90234 0.89444 0.87387 0.88835 0.88957 0.88524 0.88501 0.89537 0.90636 0.87648 0.88882 0.88994 0.88740 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.14 -1.92 4.25 -27.88 -0.12 -2.04 16 13 C 0.51 7.47 7.67 -10.98 -0.08 7.38 16 14 O -0.53 -9.91 15.56 5.56 0.09 -9.82 16 15 N -0.61 -6.69 2.47 -173.69 -0.43 -7.11 16 16 C 0.14 1.14 5.49 -4.04 -0.02 1.12 16 17 C -0.17 -1.37 5.94 -90.62 -0.54 -1.91 16 18 C -0.18 -1.18 10.18 -26.73 -0.27 -1.45 16 19 C -0.17 -1.17 10.25 -26.73 -0.27 -1.45 16 20 C 0.15 1.47 5.69 -4.04 -0.02 1.45 16 21 C -0.16 -1.57 6.01 -90.62 -0.54 -2.11 16 22 C -0.18 -1.34 10.18 -26.72 -0.27 -1.61 16 23 C -0.17 -1.43 10.25 -26.73 -0.27 -1.70 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.09 1.08 7.40 -51.93 -0.38 0.70 16 32 H 0.09 1.12 8.04 -51.93 -0.42 0.71 16 33 H 0.08 0.53 7.80 -51.93 -0.41 0.13 16 34 H 0.09 0.68 6.44 -51.93 -0.33 0.35 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.03 7.42 -51.93 -0.39 0.64 16 41 H 0.08 0.60 7.81 -51.93 -0.41 0.19 16 42 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -33.24 378.21 -10.78 -44.02 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.62 Total: -2.50 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -3.23 Total: -20.29 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.31 Total: -34.14 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.24 -10.78 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588368402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.436 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds