Wall clock time and date at job start Tue Mar 31 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00186 * 2 1 4 4 H 1.48503 * 109.46921 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47103 * 299.99860 * 3 2 1 6 6 H 1.48497 * 109.47100 * 60.00210 * 3 2 1 7 7 C 1.37880 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00361 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47074 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47290 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46885 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00352 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99598 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00048 * 0.02562 * 15 13 12 17 17 C 1.53006 * 109.46726 * 269.99755 * 16 15 13 18 18 C 1.53001 * 117.49866 * 243.62197 * 17 16 15 19 19 C 1.53000 * 117.49497 * 174.99789 * 17 16 15 20 20 C 1.46504 * 119.99550 * 179.97438 * 15 13 12 21 21 C 1.52995 * 109.46979 * 269.99999 * 20 15 13 22 22 C 1.53009 * 117.49573 * 243.62535 * 21 20 15 23 23 C 1.53003 * 117.49703 * 175.00483 * 21 20 15 24 24 H 0.96999 * 119.99314 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46546 * 59.99890 * 9 7 2 26 26 H 1.08995 * 109.47035 * 300.00432 * 9 7 2 27 27 H 1.09002 * 109.47576 * 60.00394 * 10 9 7 28 28 H 1.08995 * 109.47388 * 300.00089 * 10 9 7 29 29 H 1.09001 * 109.47107 * 60.00032 * 11 10 9 30 30 H 1.08995 * 109.47037 * 300.00244 * 11 10 9 31 31 H 1.09001 * 109.47031 * 59.99970 * 12 11 10 32 32 H 1.08996 * 109.46808 * 300.00358 * 12 11 10 33 33 H 1.08995 * 109.47463 * 150.00191 * 16 15 13 34 34 H 1.09000 * 109.47136 * 29.99756 * 16 15 13 35 35 H 1.08996 * 115.55031 * 29.33683 * 17 16 15 36 36 H 1.08996 * 117.49555 * 359.97438 * 18 17 16 37 37 H 1.08995 * 117.49577 * 145.02406 * 18 17 16 38 38 H 1.08998 * 117.49694 * 214.97781 * 19 17 16 39 39 H 1.08998 * 117.50118 * 359.97438 * 19 17 16 40 40 H 1.08991 * 109.47330 * 30.00143 * 20 15 13 41 41 H 1.09000 * 109.46366 * 150.00251 * 20 15 13 42 42 H 1.08997 * 115.55756 * 29.33159 * 21 20 15 43 43 H 1.08996 * 117.49733 * 359.97438 * 22 21 20 44 44 H 1.08997 * 117.49544 * 145.02763 * 22 21 20 45 45 H 1.08997 * 117.49954 * 214.98046 * 23 21 20 46 46 H 1.08997 * 117.49911 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4743 -6.1501 -0.0005 13 6 1.7207 -7.4552 -0.0018 14 8 0.5079 -7.4551 -0.0026 15 7 2.3946 -8.6224 -0.0010 16 6 3.8596 -8.6225 0.0017 17 6 4.3722 -8.6220 -1.4399 18 6 5.1769 -9.8378 -1.9039 19 6 5.8827 -8.5037 -1.6525 20 6 1.6620 -9.8911 -0.0016 21 6 1.4054 -10.3326 1.4406 22 6 2.0559 -11.6368 1.9064 23 6 0.5476 -11.5813 1.6552 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6045 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8538 -5.0446 -0.8914 30 1 0.8532 -5.0451 0.8885 31 1 3.1003 -6.0925 0.8899 32 1 3.1016 -6.0923 -0.8900 33 1 4.2220 -9.5126 0.5158 34 1 4.2220 -7.7327 0.5165 35 1 3.7219 -8.1400 -2.1699 36 1 5.3415 -10.6376 -1.1821 37 1 5.0561 -10.1559 -2.9394 38 1 6.2261 -7.9442 -2.5226 39 1 6.5112 -8.4257 -0.7654 40 1 0.7102 -9.7608 -0.5165 41 1 2.2516 -10.6508 -0.5148 42 1 1.3133 -9.5275 2.1695 43 1 2.6662 -12.1804 1.1853 44 1 2.3919 -11.6897 2.9420 45 1 -0.1085 -11.5977 2.5253 46 1 0.1658 -12.0879 0.7689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588368402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:37 Heat of formation + Delta-G solvation = -30.536473 kcal Electronic energy + Delta-G solvation = -21527.888722 eV Core-core repulsion = 18417.467836 eV Total energy + Delta-G solvation = -3110.420886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18089 -38.62001 -38.14242 -36.64483 -35.57072 -34.61160 -31.67501 -29.25429 -27.89366 -26.55827 -24.03700 -23.26074 -23.14492 -21.98435 -21.87785 -21.55252 -19.89854 -18.44245 -17.88399 -17.65051 -17.01469 -16.51126 -16.14481 -16.05723 -15.71944 -15.01260 -14.90319 -14.55315 -14.33039 -13.82790 -13.69426 -13.65162 -13.54113 -13.15428 -12.90373 -12.78721 -12.43474 -12.36218 -12.30247 -12.27131 -12.16282 -12.14431 -11.44978 -11.40452 -11.34684 -11.30297 -11.13289 -10.88930 -10.83467 -10.62836 -10.55896 -9.70650 -8.18779 -6.30999 1.40363 1.41514 1.55033 1.61439 1.95875 2.41987 2.88605 2.96763 3.13959 3.52484 3.80106 3.91166 3.99286 4.02318 4.03406 4.07044 4.13548 4.16423 4.26631 4.40130 4.52791 4.61918 4.65406 4.70008 4.76471 4.78432 4.80453 4.85782 4.87840 4.90111 5.01660 5.11422 5.17560 5.19512 5.25433 5.30775 5.33632 5.34542 5.36421 5.56111 5.64649 5.77400 5.87701 6.25201 6.36760 6.87535 7.19258 7.38655 8.93807 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.003064 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.311043 B = 9135.522565 C =10216.060235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.094 4.094 11 C -0.095 4.095 12 C -0.126 4.126 13 C 0.509 3.491 14 O -0.585 6.585 15 N -0.603 5.603 16 C 0.139 3.861 17 C -0.186 4.186 18 C -0.172 4.172 19 C -0.169 4.169 20 C 0.149 3.851 21 C -0.183 4.183 22 C -0.157 4.157 23 C -0.180 4.180 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.562 -26.754 0.178 29.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.132 4.132 11 C -0.133 4.133 12 C -0.165 4.165 13 C 0.299 3.701 14 O -0.465 6.465 15 N -0.334 5.334 16 C 0.017 3.983 17 C -0.205 4.205 18 C -0.209 4.209 19 C -0.206 4.206 20 C 0.026 3.974 21 C -0.202 4.202 22 C -0.194 4.194 23 C -0.218 4.218 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.799 -26.667 0.176 29.580 hybrid contribution -0.549 1.186 -0.073 1.309 sum 12.249 -25.481 0.103 28.272 Atomic orbital electron populations 1.70146 1.08098 1.27686 1.51962 1.26108 0.95792 1.03781 0.94784 0.85320 0.79219 0.78339 0.77688 1.18017 1.20472 1.20441 1.21780 0.93753 0.92167 1.50121 0.91540 1.19052 0.94664 0.93820 0.94267 1.21434 0.97790 0.92649 1.01278 1.21250 0.97452 0.93739 1.00884 1.21697 0.98902 0.89868 1.06073 1.21213 0.87571 0.86739 0.74558 1.90684 1.16357 1.88091 1.51392 1.47984 1.07668 1.05071 1.72652 1.21404 0.77235 1.04956 0.94737 1.22723 0.95092 1.04779 0.97939 1.23118 1.03309 0.91723 1.02712 1.23020 0.93157 1.00354 1.04090 1.21010 0.97010 0.84961 0.94408 1.22604 1.07543 0.92243 0.97843 1.23135 0.94996 0.98224 1.03041 1.23009 0.94606 1.00345 1.03805 0.92857 0.99783 0.99748 0.92036 0.92144 0.94030 0.93956 0.86664 0.86983 0.87917 0.88761 0.89368 0.87272 0.89043 0.88799 0.87225 0.92219 0.87825 0.90199 0.86873 0.88316 0.88953 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.71 13.29 21.45 0.28 -59.43 16 2 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.07 4.97 29.85 0.15 1.22 16 10 C -0.09 -3.95 5.15 30.59 0.16 -3.80 16 11 C -0.10 -3.61 4.50 30.60 0.14 -3.47 16 12 C -0.13 -3.41 4.25 29.85 0.13 -3.28 16 13 C 0.51 14.96 7.67 87.66 0.67 15.64 16 14 O -0.59 -23.06 15.56 -3.03 -0.05 -23.11 16 15 N -0.60 -12.51 2.47 -821.81 -2.03 -14.54 16 16 C 0.14 1.86 5.49 86.38 0.47 2.34 16 17 C -0.19 -2.48 5.94 -10.79 -0.06 -2.55 16 18 C -0.17 -1.72 10.18 30.60 0.31 -1.40 16 19 C -0.17 -1.80 10.25 30.60 0.31 -1.49 16 20 C 0.15 2.85 5.69 86.38 0.49 3.34 16 21 C -0.18 -3.35 6.01 -10.79 -0.06 -3.42 16 22 C -0.16 -1.89 10.18 30.60 0.31 -1.58 16 23 C -0.18 -2.75 10.25 30.60 0.31 -2.43 16 24 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 30 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 31 H 0.12 2.53 7.40 -2.39 -0.02 2.51 16 32 H 0.11 2.57 8.04 -2.39 -0.02 2.55 16 33 H 0.10 0.95 7.80 -2.39 -0.02 0.94 16 34 H 0.09 1.16 6.44 -2.39 -0.02 1.15 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 0.77 8.03 -2.39 -0.02 0.75 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 1.47 7.42 -2.39 -0.02 1.45 16 41 H 0.10 1.37 7.81 -2.39 -0.02 1.36 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.11 0.94 8.03 -2.39 -0.02 0.92 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.42 378.21 5.17 -70.26 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.91 Total: 11.98 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 4.03 Total: -32.38 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.75 Total: -73.97 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -75.42 5.17 -70.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588368402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.719 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds