Wall clock time and date at job start Tue Mar 31 2020 01:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47366 * 240.00162 * 3 2 1 5 5 H 1.48503 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47024 * 120.00099 * 3 2 1 7 7 C 1.37877 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46818 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46905 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47190 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47086 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00156 * 4.86791 * 13 12 11 15 15 N 1.34771 * 120.00080 * 184.86214 * 13 12 11 16 16 C 1.46506 * 120.00257 * 186.26211 * 15 13 12 17 17 C 1.52995 * 117.49744 * 16.66976 * 16 15 13 18 18 C 1.52999 * 117.49801 * 308.01331 * 16 15 13 19 19 C 1.46497 * 120.00058 * 6.26528 * 15 13 12 20 20 C 1.54269 * 110.03410 * 59.88479 * 19 15 13 21 21 C 1.54961 * 104.16097 * 217.13806 * 20 19 15 22 22 C 1.54883 * 102.77917 * 37.88838 * 21 20 19 23 23 C 1.53877 * 110.03207 * 302.66939 * 19 15 13 24 24 H 0.97007 * 119.99581 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46667 * 60.00089 * 9 7 2 26 26 H 1.09001 * 109.47071 * 300.00203 * 9 7 2 27 27 H 1.08990 * 109.47418 * 60.00247 * 10 9 7 28 28 H 1.09001 * 109.47093 * 299.99734 * 10 9 7 29 29 H 1.09004 * 109.47030 * 59.99735 * 11 10 9 30 30 H 1.09001 * 109.46944 * 299.99724 * 11 10 9 31 31 H 1.09001 * 109.47136 * 299.99833 * 12 11 10 32 32 H 1.08997 * 109.46783 * 59.99963 * 12 11 10 33 33 H 1.09000 * 115.54829 * 162.34160 * 16 15 13 34 34 H 1.09002 * 117.50079 * 0.02562 * 17 16 15 35 35 H 1.09006 * 117.50031 * 145.01643 * 17 16 15 36 36 H 1.08995 * 117.49836 * 214.98026 * 18 16 15 37 37 H 1.09002 * 117.49737 * 359.97438 * 18 16 15 38 38 H 1.09005 * 110.02233 * 181.27523 * 19 15 13 39 39 H 1.09001 * 110.48728 * 335.78817 * 20 19 15 40 40 H 1.09004 * 110.48670 * 98.42770 * 20 19 15 41 41 H 1.08998 * 110.72274 * 279.56711 * 21 20 19 42 42 H 1.09007 * 110.92170 * 156.29326 * 21 20 19 43 43 H 1.09003 * 110.49139 * 203.40368 * 22 21 20 44 44 H 1.09007 * 110.59976 * 80.81503 * 22 21 20 45 45 H 1.09002 * 110.02972 * 238.56790 * 23 19 15 46 46 H 1.08993 * 110.03145 * 359.94922 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7207 -7.4551 -0.0018 14 8 0.5111 -7.4570 -0.0905 15 7 2.3909 -8.6202 0.0966 16 6 1.6750 -9.8910 -0.0410 17 6 0.2814 -9.8521 -0.6712 18 6 0.4356 -10.1017 0.8311 19 6 3.8353 -8.6161 0.3412 20 6 4.1435 -7.9034 1.6742 21 6 5.4611 -7.1360 1.3981 22 6 5.2743 -6.6483 -0.0601 23 6 4.5543 -7.8187 -0.7611 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8717 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.8537 -5.0445 -0.8914 30 1 0.8532 -5.0451 0.8886 31 1 3.1009 -6.0919 -0.8918 32 1 3.1009 -6.0928 0.8882 33 1 2.2975 -10.7611 -0.2494 34 1 -0.1027 -8.8811 -0.9839 35 1 -0.0131 -10.6968 -1.2941 36 1 0.2425 -11.1104 1.1960 37 1 0.1531 -9.2949 1.5074 38 1 4.2121 -9.6385 0.3687 39 1 3.3435 -7.2082 1.9291 40 1 4.2856 -8.6320 2.4724 41 1 6.3195 -7.8032 1.4754 42 1 5.5687 -6.2903 2.0774 43 1 6.2415 -6.4611 -0.5266 44 1 4.6580 -5.7496 -0.0880 45 1 5.2805 -8.4541 -1.2681 46 1 3.8286 -7.4357 -1.4786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588755821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:02 Heat of formation + Delta-G solvation = -13.644358 kcal Electronic energy + Delta-G solvation = -22704.121334 eV Core-core repulsion = 19594.432944 eV Total energy + Delta-G solvation = -3109.688389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00288 -38.10933 -36.67022 -34.68159 -33.16619 -32.51322 -29.75565 -28.99107 -27.54480 -25.86013 -23.47774 -22.39368 -21.64379 -21.01733 -20.90189 -19.90487 -18.85207 -16.98837 -16.40046 -16.09364 -15.78965 -15.28924 -14.77752 -14.70116 -14.42105 -14.17140 -13.76817 -13.41628 -13.17967 -12.52319 -12.46018 -12.02097 -11.94708 -11.60299 -11.56845 -11.34018 -11.30178 -11.24997 -11.06122 -10.94484 -10.86087 -10.73320 -10.50938 -10.40820 -10.32399 -10.16717 -9.57700 -9.39555 -9.14269 -8.95109 -8.43197 -8.28382 -5.93268 -3.95813 2.63810 2.80288 3.36344 3.40784 3.42894 3.84796 4.26693 4.37834 4.46581 4.51231 4.71127 4.81664 4.96417 5.02191 5.12245 5.17271 5.25115 5.30021 5.38623 5.40663 5.41583 5.42567 5.48038 5.56788 5.67707 5.75289 5.81885 5.93164 5.97410 5.99817 6.07989 6.18023 6.21321 6.32581 6.34376 6.57608 6.71699 6.86818 7.04497 7.22069 7.36927 7.75917 7.92459 8.08212 8.28879 8.49884 9.11706 9.67666 11.18024 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.003858 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.836230 B = 7256.485970 C = 8272.586932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.105 4.105 12 C -0.161 4.161 13 C 0.517 3.483 14 O -0.527 6.527 15 N -0.589 5.589 16 C 0.068 3.932 17 C -0.192 4.192 18 C -0.187 4.187 19 C 0.144 3.856 20 C -0.147 4.147 21 C -0.122 4.122 22 C -0.140 4.140 23 C -0.145 4.145 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.435 -22.301 0.921 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.146 4.146 11 C -0.143 4.143 12 C -0.199 4.199 13 C 0.307 3.693 14 O -0.404 6.404 15 N -0.320 5.320 16 C -0.036 4.036 17 C -0.229 4.229 18 C -0.226 4.226 19 C 0.040 3.960 20 C -0.185 4.185 21 C -0.160 4.160 22 C -0.178 4.178 23 C -0.183 4.183 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.154 0.846 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.638 -22.178 0.865 24.197 hybrid contribution 0.523 0.749 0.037 0.915 sum 10.161 -21.429 0.902 23.733 Atomic orbital electron populations 1.69970 1.06045 1.26583 1.50875 1.25035 0.94826 0.99179 0.95469 0.86684 0.79590 0.83316 0.78540 1.20286 1.21326 1.20295 1.21246 0.92925 0.91212 1.50488 0.92821 1.19087 0.94052 0.91256 0.97270 1.21634 0.99049 0.94020 0.99942 1.21495 0.97136 0.92934 1.02775 1.22736 1.00360 0.91952 1.04890 1.21066 0.87935 0.85446 0.74822 1.90545 1.14302 1.87007 1.48535 1.47621 1.07922 1.04674 1.71833 1.21666 0.88461 0.87271 1.06199 1.23804 0.97971 1.05544 0.95611 1.23236 1.02234 1.02305 0.94828 1.21783 0.79057 1.00483 0.94642 1.23062 0.98822 0.99924 0.96700 1.22464 0.96759 0.99897 0.96911 1.22736 1.01056 0.98692 0.95284 1.22780 0.99821 0.97684 0.98007 0.93010 0.96618 0.96655 0.93556 0.93540 0.91858 0.92110 0.88055 0.87942 0.85898 0.84594 0.89517 0.89002 0.88474 0.89014 0.89942 0.91065 0.91357 0.90823 0.91334 0.89560 0.91010 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.11 -1.92 4.52 -26.73 -0.12 -2.04 16 12 C -0.16 -2.25 2.73 -27.88 -0.08 -2.33 16 13 C 0.52 7.55 6.47 -10.99 -0.07 7.47 16 14 O -0.53 -9.42 11.72 5.56 0.07 -9.36 16 15 N -0.59 -6.72 2.80 -157.32 -0.44 -7.16 16 16 C 0.07 0.72 6.58 -67.93 -0.45 0.28 16 17 C -0.19 -2.30 9.63 -26.70 -0.26 -2.55 16 18 C -0.19 -2.12 9.87 -26.70 -0.26 -2.38 16 19 C 0.14 1.25 3.37 -66.81 -0.23 1.03 16 20 C -0.15 -1.28 5.85 -25.03 -0.15 -1.42 16 21 C -0.12 -0.96 6.75 -24.70 -0.17 -1.13 16 22 C -0.14 -1.21 5.98 -25.07 -0.15 -1.36 16 23 C -0.14 -1.22 5.64 -25.61 -0.14 -1.36 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 1.29 4.57 -51.93 -0.24 1.06 16 32 H 0.10 1.30 3.73 -51.93 -0.19 1.10 16 33 H 0.12 0.96 8.01 -51.93 -0.42 0.55 16 34 H 0.14 2.08 5.25 -52.03 -0.27 1.81 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.34 7.57 -51.93 -0.39 0.94 16 38 H 0.09 0.63 7.86 -51.93 -0.41 0.22 16 39 H 0.08 0.88 5.22 -51.93 -0.27 0.61 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.89 5.27 -51.92 -0.27 0.61 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.78 5.63 -51.93 -0.29 0.49 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -32.39 345.67 -10.00 -42.38 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.79 Total: 0.50 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.76 Total: -21.59 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.30 Total: -34.07 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.39 -10.00 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588755821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.740 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds