Wall clock time and date at job start Tue Mar 31 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47303 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47004 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00472 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99538 * 180.02562 * 13 12 11 16 16 C 1.46921 * 120.63392 * 359.71194 * 15 13 12 17 17 C 1.52763 * 109.01351 * 233.58904 * 16 15 13 18 18 C 1.53050 * 109.37952 * 305.59011 * 17 16 15 19 19 C 1.53036 * 109.53761 * 61.23889 * 18 17 16 20 20 H 1.08996 * 109.52453 * 58.59858 * 19 18 17 21 21 C 1.53006 * 109.49618 * 178.68480 * 19 18 17 22 22 C 1.52994 * 117.49391 * 248.58594 * 21 19 18 23 23 C 1.53001 * 117.49715 * 179.97438 * 21 19 18 24 24 C 1.46933 * 120.63009 * 180.02562 * 15 13 12 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 31 31 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 32 32 H 1.09003 * 109.46690 * 300.00171 * 12 11 10 33 33 H 1.08993 * 109.47209 * 60.00145 * 12 11 10 34 34 H 1.08995 * 109.58677 * 353.42347 * 16 15 13 35 35 H 1.09002 * 109.58518 * 113.84767 * 16 15 13 36 36 H 1.08996 * 109.56667 * 185.55899 * 17 16 15 37 37 H 1.08997 * 109.38371 * 65.50982 * 17 16 15 38 38 H 1.08997 * 109.45853 * 301.21881 * 18 17 16 39 39 H 1.08995 * 109.44260 * 181.25504 * 18 17 16 40 40 H 1.08993 * 115.54918 * 34.25367 * 21 19 18 41 41 H 1.08995 * 117.50588 * 359.97438 * 22 21 19 42 42 H 1.09008 * 117.50076 * 145.02251 * 22 21 19 43 43 H 1.09002 * 117.49225 * 214.97484 * 23 21 19 44 44 H 1.08995 * 117.50078 * 359.97438 * 23 21 19 45 45 H 1.09006 * 109.58434 * 246.15748 * 24 15 13 46 46 H 1.09006 * 109.58321 * 6.43063 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 6 2.4748 -6.1499 0.0324 13 6 1.7213 -7.4549 0.0391 14 8 0.5085 -7.4551 0.0391 15 7 2.3953 -8.6221 0.0461 16 6 3.8645 -8.6382 0.0410 17 6 4.3485 -9.5103 -1.1161 18 6 3.7047 -10.8949 -1.0124 19 6 2.1833 -10.7605 -1.1101 20 1 1.9196 -10.2857 -2.0550 21 6 1.5425 -12.1481 -1.0392 22 6 0.8698 -12.6809 -2.3058 23 6 0.0167 -12.2265 -1.1201 24 6 1.6748 -9.9026 0.0521 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.8541 -5.0399 0.9162 31 1 0.8536 -5.0496 -0.8638 32 1 3.1015 -6.0971 -0.8579 33 1 3.1014 -6.0871 0.9220 34 1 4.2406 -7.6232 -0.0862 35 1 4.2286 -9.0498 0.9823 36 1 5.4330 -9.6091 -1.0698 37 1 4.0652 -9.0473 -2.0612 38 1 3.9686 -11.3474 -0.0565 39 1 4.0665 -11.5251 -1.8247 40 1 2.0506 -12.8684 -0.3981 41 1 0.8833 -12.0429 -3.1894 42 1 0.9349 -13.7520 -2.4978 43 1 -0.4794 -12.9985 -0.5318 44 1 -0.5307 -11.2896 -1.2233 45 1 1.8564 -10.4196 0.9945 46 1 0.6064 -9.7212 -0.0651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589526170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:02 Heat of formation + Delta-G solvation = -53.178037 kcal Electronic energy + Delta-G solvation = -21624.402082 eV Core-core repulsion = 18512.999384 eV Total energy + Delta-G solvation = -3111.402698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -40.45573 -38.53625 -36.61510 -35.08343 -33.04768 -32.70748 -31.25596 -29.43916 -26.14596 -24.92256 -24.14172 -22.70116 -22.20897 -21.47683 -20.40192 -20.18021 -18.88170 -17.12764 -16.61430 -16.10567 -15.88845 -15.63959 -14.91752 -14.73585 -14.36067 -14.07149 -13.69849 -13.50398 -13.27091 -13.20057 -12.82674 -12.47245 -12.23272 -12.15757 -11.89545 -11.52439 -11.34783 -11.28426 -11.02503 -10.94224 -10.91768 -10.62564 -10.55217 -10.51973 -10.30252 -10.08293 -9.81042 -9.72122 -9.48637 -8.75960 -8.44313 -8.25227 -6.28941 -3.97423 2.67505 2.86233 3.43975 3.46681 3.50815 3.66522 4.14017 4.39549 4.47445 4.58113 4.59797 4.61583 4.63322 4.81694 4.95889 5.03318 5.07536 5.19945 5.24285 5.27918 5.31908 5.34497 5.46007 5.48458 5.51291 5.57717 5.59649 5.66813 5.77303 5.79457 5.81807 5.90877 6.05230 6.06767 6.21061 6.36197 6.47855 6.73937 6.90413 7.06747 7.31021 7.52280 7.65134 8.20850 8.30737 8.54642 8.96586 9.75414 11.11915 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035190 B = 0.002621 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.483391 B =10678.709196 C =11182.154323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.601 4.601 8 H 0.048 0.952 9 C 0.006 3.994 10 C -0.103 4.103 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.515 3.485 14 O -0.537 6.537 15 N -0.620 5.620 16 C 0.105 3.895 17 C -0.137 4.137 18 C -0.111 4.111 19 C -0.071 4.071 20 H 0.074 0.926 21 C -0.148 4.148 22 C -0.178 4.178 23 C -0.180 4.180 24 C 0.118 3.882 25 H 0.270 0.730 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 -27.634 -1.906 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.192 4.192 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.031 4.031 10 C -0.140 4.140 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.413 6.413 15 N -0.355 5.355 16 C -0.018 4.018 17 C -0.175 4.175 18 C -0.148 4.148 19 C -0.090 4.090 20 H 0.093 0.907 21 C -0.166 4.166 22 C -0.215 4.215 23 C -0.217 4.217 24 C -0.005 4.005 25 H 0.080 0.920 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.250 -25.962 -1.899 27.308 hybrid contribution 0.332 -1.851 -0.007 1.881 sum 8.582 -27.814 -1.906 29.170 Atomic orbital electron populations 1.70736 1.06900 1.30702 1.46863 1.25865 0.96610 1.02753 0.93957 0.83512 0.74619 0.75154 0.76678 1.21506 1.21549 1.21031 1.22109 0.94233 0.92172 1.55438 0.93390 1.19229 0.94715 0.93119 0.96008 1.21512 0.98784 0.93469 1.00267 1.21473 0.97100 0.92817 1.02844 1.21797 1.00040 0.92064 1.03788 1.21076 0.88185 0.85419 0.74897 1.90687 1.14190 1.87250 1.49169 1.48198 1.06747 1.05911 1.74613 1.21675 0.79720 1.01660 0.98728 1.21869 1.00577 0.95918 0.99182 1.21531 0.94183 0.96822 1.02278 1.21102 0.95271 0.93274 0.99384 0.90738 1.22252 0.94979 0.97728 1.01677 1.22996 1.04678 1.01267 0.92566 1.22978 0.93200 1.03456 1.02072 1.21541 0.98218 0.83086 0.97615 0.92001 0.97511 0.97507 0.93333 0.93316 0.91867 0.91902 0.89186 0.89148 0.89200 0.91368 0.90421 0.91344 0.91676 0.91507 0.87684 0.88824 0.88884 0.88743 0.88471 0.91759 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.18 13.65 55.43 0.76 -28.42 16 2 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 3 Si 1.07 26.02 29.90 -169.99 -5.08 20.94 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.60 -17.78 9.11 -34.44 -0.31 -18.09 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 10 C -0.10 -2.18 5.15 -26.73 -0.14 -2.31 16 11 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 12 C -0.14 -1.91 4.05 -27.88 -0.11 -2.03 16 13 C 0.51 7.63 7.70 -10.99 -0.08 7.55 16 14 O -0.54 -10.13 15.39 5.55 0.09 -10.05 16 15 N -0.62 -6.98 2.98 -173.05 -0.52 -7.50 16 16 C 0.11 0.84 6.31 -3.93 -0.02 0.82 16 17 C -0.14 -0.92 6.07 -26.83 -0.16 -1.08 16 18 C -0.11 -0.73 5.15 -26.69 -0.14 -0.86 16 19 C -0.07 -0.58 2.49 -90.52 -0.23 -0.80 16 20 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 21 C -0.15 -1.06 5.15 -90.62 -0.47 -1.52 16 22 C -0.18 -1.24 10.17 -26.74 -0.27 -1.51 16 23 C -0.18 -1.37 9.80 -26.74 -0.26 -1.63 16 24 C 0.12 1.21 5.47 -3.73 -0.02 1.19 16 25 H 0.27 8.60 7.22 -40.82 -0.29 8.31 16 26 H 0.01 0.19 8.01 -51.92 -0.42 -0.23 16 27 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.09 1.09 7.68 -51.93 -0.40 0.70 16 33 H 0.09 1.10 7.95 -51.93 -0.41 0.69 16 34 H 0.09 0.67 5.93 -51.93 -0.31 0.36 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.66 8.11 -51.93 -0.42 0.24 16 41 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 42 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.85 7.69 -51.93 -0.40 0.45 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -34.26 362.43 -10.35 -44.61 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -8.50 Total: -3.00 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.56 Total: -22.04 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.24 Total: -35.92 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.26 -10.35 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589526170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.566 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds