Wall clock time and date at job start Tue Mar 31 2020 01:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48492 * 109.47543 * 270.00070 * 3 2 1 5 5 H 1.48496 * 109.47244 * 30.00969 * 3 2 1 6 6 H 1.48509 * 109.46489 * 150.00439 * 3 2 1 7 7 C 1.37875 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00113 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.46927 * 120.62995 * 359.72079 * 13 11 10 15 15 C 1.53626 * 108.53906 * 126.36585 * 14 13 11 16 16 C 1.53041 * 109.24183 * 54.85853 * 15 14 13 17 17 C 1.53000 * 109.45179 * 178.49247 * 16 15 14 18 18 C 1.54268 * 110.03368 * 297.97010 * 17 16 15 19 19 C 1.54956 * 104.16115 * 217.13619 * 18 17 16 20 20 C 1.54889 * 102.78091 * 37.88423 * 19 18 17 21 21 C 1.53872 * 110.03479 * 180.75173 * 17 16 15 22 22 C 1.53036 * 109.53807 * 298.50777 * 16 15 14 23 23 C 1.46923 * 120.62964 * 179.97438 * 13 11 10 24 24 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46932 * 60.00111 * 9 7 2 26 26 H 1.09005 * 109.47238 * 300.00488 * 9 7 2 27 27 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 28 28 H 1.08997 * 109.47279 * 300.00509 * 10 9 7 29 29 H 1.08998 * 109.58645 * 246.19910 * 14 13 11 30 30 H 1.09001 * 109.58579 * 6.63067 * 14 13 11 31 31 H 1.08990 * 109.63926 * 294.86483 * 15 14 13 32 32 H 1.09009 * 109.45677 * 174.73785 * 15 14 13 33 33 H 1.09010 * 109.45941 * 58.52811 * 16 15 14 34 34 H 1.08998 * 110.01416 * 59.35659 * 17 16 15 35 35 H 1.09004 * 110.48272 * 335.78303 * 18 17 16 36 36 H 1.08999 * 110.48415 * 98.41880 * 18 17 16 37 37 H 1.09000 * 110.72107 * 279.57201 * 19 18 17 38 38 H 1.09005 * 110.92671 * 156.29812 * 19 18 17 39 39 H 1.08996 * 110.49103 * 203.40734 * 20 19 18 40 40 H 1.09006 * 110.59674 * 80.81594 * 20 19 18 41 41 H 1.08995 * 110.03131 * 238.56906 * 21 17 16 42 42 H 1.08995 * 110.03261 * 359.95086 * 21 17 16 43 43 H 1.09001 * 109.49825 * 301.41219 * 22 16 15 44 44 H 1.09002 * 109.49833 * 181.31508 * 22 16 15 45 45 H 1.09007 * 109.58781 * 353.37617 * 23 13 11 46 46 H 1.08998 * 109.58580 * 113.65434 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1657 -6.1344 0.0007 14 6 3.6348 -6.1505 -0.0053 15 6 4.1187 -7.0160 1.1681 16 6 3.4749 -8.4011 1.0722 17 6 3.9826 -9.2793 2.2176 18 6 5.5094 -9.4673 2.1026 19 6 5.7461 -10.9313 2.5518 20 6 4.5262 -11.6748 1.9534 21 6 3.3576 -10.6822 2.1232 22 6 1.9535 -8.2661 1.1690 23 6 1.4451 -7.4148 0.0019 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6043 -0.8904 29 1 3.9917 -6.5717 -0.9452 30 1 4.0119 -5.1342 0.1087 31 1 3.8350 -6.5474 2.1103 32 1 5.2033 -7.1151 1.1231 33 1 3.7389 -8.8591 0.1189 34 1 3.7337 -8.8233 3.1759 35 1 5.8344 -9.3276 1.0715 36 1 6.0299 -8.7753 2.7646 37 1 5.7481 -11.0055 3.6393 38 1 6.6765 -11.3200 2.1380 39 1 4.3301 -12.5932 2.5066 40 1 4.6904 -11.8937 0.8982 41 1 2.8061 -10.9074 3.0360 42 1 2.6919 -10.7371 1.2619 43 1 1.6901 -7.7857 2.1113 44 1 1.4970 -9.2549 1.1242 45 1 0.3769 -7.2329 0.1206 46 1 1.6247 -7.9360 -0.9384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589705314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:41 Heat of formation + Delta-G solvation = -95.726217 kcal Electronic energy + Delta-G solvation = -22179.645243 eV Core-core repulsion = 19066.397517 eV Total energy + Delta-G solvation = -3113.247726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29448 -39.77892 -37.62407 -35.61526 -34.14576 -33.08646 -31.97864 -29.48978 -29.33745 -27.70182 -25.30539 -24.38559 -23.32301 -21.71644 -21.25065 -20.30695 -19.81838 -18.84993 -17.70008 -16.77832 -16.71580 -16.46799 -16.34713 -16.04106 -15.12267 -15.03521 -14.64805 -14.46033 -14.36834 -14.17892 -14.09440 -13.71429 -13.33059 -13.15280 -12.81754 -12.78423 -12.47348 -12.32228 -12.21676 -11.94445 -11.92689 -11.83214 -11.74320 -11.59771 -11.38933 -11.31164 -11.17548 -11.11419 -11.08124 -10.61761 -10.57626 -9.58737 -8.18448 -6.33002 1.41734 1.44976 1.55874 1.68496 2.09001 2.43191 3.14358 3.63230 3.69402 3.71785 3.83552 3.98641 4.13780 4.19056 4.21458 4.37448 4.43820 4.49582 4.52654 4.60139 4.65435 4.70109 4.76801 4.83718 4.85001 4.88824 4.90016 5.00804 5.03642 5.06233 5.13735 5.15930 5.17320 5.24903 5.34868 5.44487 5.47467 5.50050 5.55296 5.60718 5.66257 5.70613 5.84109 6.16535 6.43126 6.85399 7.27359 7.37477 8.94487 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034198 B = 0.003083 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.563058 B = 9079.129495 C = 9651.724786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.115 4.115 11 C 0.507 3.493 12 O -0.594 6.594 13 N -0.612 5.612 14 C 0.099 3.901 15 C -0.125 4.125 16 C -0.071 4.071 17 C -0.084 4.084 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.121 4.121 23 C 0.105 3.895 24 H 0.263 0.737 25 H -0.020 1.020 26 H -0.021 1.021 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.503 -24.388 3.237 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.006 3.994 10 C -0.154 4.154 11 C 0.297 3.703 12 O -0.475 6.475 13 N -0.345 5.345 14 C -0.023 4.023 15 C -0.163 4.163 16 C -0.090 4.090 17 C -0.102 4.102 18 C -0.155 4.155 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.017 4.017 24 H 0.072 0.928 25 H -0.001 1.001 26 H -0.002 1.002 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.732 -24.299 3.243 28.600 hybrid contribution -0.570 1.060 0.098 1.208 sum 14.162 -23.239 3.340 27.418 Atomic orbital electron populations 1.70187 1.08400 1.27842 1.51474 1.26173 0.95737 1.04061 0.94585 0.85294 0.78677 0.77532 0.78580 1.19612 1.21186 1.17760 1.21704 0.94001 0.91505 1.50813 0.90506 1.18684 0.93668 0.92575 0.94494 1.21618 0.99254 0.90234 1.04311 1.21412 0.87637 0.86855 0.74357 1.90627 1.16741 1.88078 1.52033 1.48292 1.08263 1.05009 1.72978 1.22146 0.77358 1.02567 1.00213 1.22058 1.01752 0.94986 0.97503 1.21206 0.93278 0.95027 0.99465 1.21757 0.95657 0.95114 0.97683 1.22450 0.94617 0.96599 1.01853 1.22519 0.98204 0.95311 1.00379 1.22359 0.94800 0.97923 1.01083 1.22265 0.98037 0.94053 1.01782 1.21956 0.97036 0.99894 0.96996 1.21644 0.96740 0.83460 0.99831 0.92840 1.00117 1.00217 0.88164 0.87941 0.89294 0.89047 0.92823 0.88234 0.89774 0.92233 0.90760 0.91653 0.91945 0.91089 0.91724 0.91405 0.92381 0.91260 0.93450 0.89076 0.92248 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.62 13.29 21.45 0.28 -60.33 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.98 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.50 4.26 29.85 0.13 2.63 16 10 C -0.11 -4.83 3.98 29.85 0.12 -4.71 16 11 C 0.51 21.08 7.70 87.66 0.67 21.75 16 12 O -0.59 -30.94 15.40 -3.03 -0.05 -30.99 16 13 N -0.61 -18.21 2.97 -818.13 -2.43 -20.64 16 14 C 0.10 2.03 6.37 86.51 0.55 2.58 16 15 C -0.12 -2.05 5.19 30.82 0.16 -1.89 16 16 C -0.07 -1.07 1.43 -10.77 -0.02 -1.08 16 17 C -0.08 -1.12 2.50 -10.07 -0.03 -1.15 16 18 C -0.12 -1.32 5.28 31.69 0.17 -1.16 16 19 C -0.13 -1.34 6.91 31.91 0.22 -1.12 16 20 C -0.12 -1.34 6.83 31.67 0.22 -1.13 16 21 C -0.12 -1.54 5.90 31.32 0.18 -1.36 16 22 C -0.12 -2.35 5.13 30.66 0.16 -2.20 16 23 C 0.11 2.72 6.43 86.35 0.55 3.27 16 24 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 25 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 26 H -0.02 -1.34 8.10 -2.38 -0.02 -1.36 16 27 H 0.10 3.76 7.70 -2.38 -0.02 3.74 16 28 H 0.10 3.80 7.93 -2.39 -0.02 3.78 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.91 5.93 -2.39 -0.01 1.89 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.18 7.18 -2.38 -0.02 1.17 16 33 H 0.08 1.11 8.13 -2.38 -0.02 1.09 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.76 7.72 -2.38 -0.02 0.74 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.84 6.38 -2.39 -0.02 0.83 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 1.45 6.48 -2.39 -0.02 1.44 16 45 H 0.06 1.91 7.01 -2.38 -0.02 1.89 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.79 351.26 4.55 -72.24 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.92 Total: 9.76 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 3.79 Total: -16.78 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.14 Total: -80.97 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.79 4.55 -72.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589705314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.484 kcal (2) G-P(sol) polarization free energy of solvation -76.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds