Wall clock time and date at job start Tue Mar 31 2020 01:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48500 * 109.47477 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46914 * 299.99920 * 3 2 1 6 6 H 1.48506 * 109.47046 * 59.99588 * 3 2 1 7 7 C 1.37888 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99563 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47266 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47351 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99938 * 359.97438 * 13 12 11 15 15 N 1.34782 * 120.00186 * 180.02562 * 13 12 11 16 16 C 1.46495 * 119.99871 * 180.27487 * 15 13 12 17 17 H 1.08997 * 109.47357 * 17.11652 * 16 15 13 18 18 C 1.53002 * 109.47147 * 257.11335 * 16 15 13 19 19 C 1.52993 * 117.49970 * 128.62107 * 18 16 15 20 20 C 1.53000 * 60.00491 * 252.51292 * 19 18 16 21 21 C 1.53003 * 109.47065 * 137.11577 * 16 15 13 22 22 C 1.53782 * 113.61284 * 279.95895 * 21 16 15 23 23 C 1.53947 * 87.02267 * 220.04913 * 22 21 16 24 24 C 1.53785 * 87.11153 * 25.36586 * 23 22 21 25 25 H 0.96993 * 120.00377 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47337 * 59.99564 * 9 7 2 27 27 H 1.09003 * 109.47182 * 299.99655 * 9 7 2 28 28 H 1.09001 * 109.47522 * 59.99492 * 10 9 7 29 29 H 1.09003 * 109.47075 * 299.99451 * 10 9 7 30 30 H 1.09001 * 109.47232 * 59.99378 * 11 10 9 31 31 H 1.09003 * 109.47182 * 299.99533 * 11 10 9 32 32 H 1.09001 * 109.47188 * 59.99737 * 12 11 10 33 33 H 1.09003 * 109.47371 * 299.99720 * 12 11 10 34 34 H 0.97000 * 119.99882 * 359.97438 * 15 13 12 35 35 H 1.09004 * 115.55057 * 274.33472 * 18 16 15 36 36 H 1.09003 * 117.49677 * 0.02562 * 19 18 16 37 37 H 1.08999 * 117.50182 * 145.02414 * 19 18 16 38 38 H 1.08998 * 117.49942 * 252.51407 * 20 19 18 39 39 H 1.09004 * 117.51865 * 107.47381 * 20 19 18 40 40 H 1.08998 * 112.85058 * 51.15852 * 21 16 15 41 41 H 1.08993 * 113.61740 * 334.57485 * 22 21 16 42 42 H 1.09003 * 113.60833 * 105.46870 * 22 21 16 43 43 H 1.09004 * 113.54056 * 270.82085 * 23 22 21 44 44 H 1.08998 * 113.66766 * 139.93504 * 23 22 21 45 45 H 1.08999 * 113.61816 * 220.08877 * 24 23 22 46 46 H 1.09001 * 113.69008 * 89.19436 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0031 13 6 1.7210 -7.4551 0.0031 14 8 0.5082 -7.4552 0.0031 15 7 2.3949 -8.6224 0.0042 16 6 1.6624 -9.8911 -0.0019 17 1 0.6317 -9.7141 -0.3091 18 6 1.6791 -10.4963 1.4032 19 6 0.3381 -10.9190 2.0062 20 6 1.0558 -9.6750 2.5336 21 6 2.3276 -10.8593 -0.9822 22 6 1.9493 -10.6056 -2.4510 23 6 1.8872 -12.1350 -2.6155 24 6 1.5984 -12.2075 -1.1068 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5568 0.8903 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6048 -0.8878 30 1 0.8539 -5.0455 -0.8877 31 1 0.8533 -5.0443 0.8923 32 1 3.1011 -6.0918 0.8931 33 1 3.1012 -6.0928 -0.8869 34 1 3.3649 -8.6224 0.0045 35 1 2.5529 -11.1020 1.6438 36 1 -0.5560 -10.7663 1.4018 37 1 0.3292 -11.8031 2.6437 38 1 1.5192 -9.7407 3.5180 39 1 0.6342 -8.7033 2.2763 40 1 3.4008 -10.9568 -0.8183 41 1 0.9846 -10.1136 -2.5747 42 1 2.7430 -10.1349 -3.0312 43 1 2.8403 -12.5813 -2.8995 44 1 1.0579 -12.4751 -3.2357 45 1 2.1092 -13.0284 -0.6033 46 1 0.5378 -12.1547 -0.8608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:59 Heat of formation + Delta-G solvation = -29.926245 kcal Electronic energy + Delta-G solvation = -21520.693631 eV Core-core repulsion = 18410.299206 eV Total energy + Delta-G solvation = -3110.394425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37990 -38.79023 -37.04330 -34.86807 -34.02537 -32.57994 -30.02685 -28.44939 -25.93642 -25.48535 -23.68515 -22.48865 -22.28599 -20.65584 -20.45871 -19.93238 -19.46612 -16.80118 -16.47075 -16.23475 -16.10059 -15.48476 -15.34671 -14.55666 -14.45304 -14.22551 -13.69411 -13.51094 -12.72886 -12.62618 -12.60200 -12.19909 -12.15165 -11.71161 -11.64124 -11.61479 -11.44492 -11.18997 -10.97404 -10.76946 -10.59399 -10.56197 -10.50035 -10.45974 -10.37819 -10.23738 -9.67322 -9.58311 -9.18015 -9.01958 -8.93938 -8.28891 -5.93476 -3.95784 2.78733 3.05982 3.34330 3.41439 3.45507 3.78876 4.13774 4.35662 4.40923 4.50645 4.55259 4.74377 4.78373 4.85395 4.91837 5.16778 5.17005 5.30888 5.38057 5.41313 5.43266 5.45815 5.48753 5.50370 5.60746 5.62828 5.70510 5.78406 5.89588 5.93694 5.99817 6.08805 6.17930 6.19033 6.34814 6.46470 6.59376 6.87799 7.05883 7.23324 7.53362 7.76758 7.92860 8.08377 8.35224 8.50335 9.12276 9.67778 11.17951 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.002657 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.603752 B =10534.980117 C =11010.154492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.139 4.139 13 C 0.514 3.486 14 O -0.538 6.538 15 N -0.728 5.728 16 C 0.179 3.821 17 H 0.097 0.903 18 C -0.165 4.165 19 C -0.171 4.171 20 C -0.172 4.172 21 C -0.116 4.116 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.126 4.126 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.398 0.602 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -27.492 -0.476 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.179 4.179 13 C 0.302 3.698 14 O -0.414 6.414 15 N -0.379 5.379 16 C 0.074 3.926 17 H 0.115 0.885 18 C -0.185 4.185 19 C -0.209 4.209 20 C -0.209 4.209 21 C -0.135 4.135 22 C -0.172 4.172 23 C -0.182 4.182 24 C -0.164 4.164 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.231 0.769 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.502 -27.351 -0.483 27.903 hybrid contribution 1.006 0.920 0.088 1.366 sum 6.507 -26.431 -0.395 27.223 Atomic orbital electron populations 1.69981 1.06050 1.26378 1.51083 1.25048 0.94836 0.99234 0.95503 0.86562 0.80086 0.83953 0.77538 1.19784 1.21055 1.21060 1.21328 0.93012 0.91205 1.50186 0.92718 1.19098 0.94069 0.91297 0.97290 1.21649 0.99059 0.94058 1.00019 1.21437 0.97009 0.92724 1.02866 1.21794 1.00085 0.92189 1.03871 1.21070 0.88470 0.85642 0.74607 1.90688 1.14228 1.87576 1.48920 1.46066 1.10048 1.05360 1.76449 1.20563 0.97705 0.82392 0.91915 0.88502 1.22643 0.97367 1.03988 0.94486 1.22932 0.95374 0.98814 1.03772 1.22915 1.03866 0.96591 0.97575 1.22825 1.00053 0.95678 0.94906 1.22958 1.02199 0.96294 0.95744 1.22860 1.01833 0.96701 0.96791 1.22816 1.00987 0.96411 0.96195 0.93111 0.96608 0.96613 0.93525 0.93524 0.91882 0.91879 0.89246 0.89280 0.76864 0.87975 0.88755 0.88954 0.89103 0.88223 0.89068 0.89947 0.91486 0.90323 0.91440 0.91459 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.87 5.70 -27.89 -0.16 -2.03 16 13 C 0.51 7.06 7.50 -10.98 -0.08 6.98 16 14 O -0.54 -9.58 14.92 5.56 0.08 -9.50 16 15 N -0.73 -7.22 4.82 -53.81 -0.26 -7.48 16 16 C 0.18 1.68 2.21 -67.93 -0.15 1.53 16 17 H 0.10 1.18 6.70 -51.93 -0.35 0.83 16 18 C -0.17 -1.44 4.92 -90.62 -0.45 -1.89 16 19 C -0.17 -1.52 10.18 -26.73 -0.27 -1.79 16 20 C -0.17 -1.78 10.12 -26.73 -0.27 -2.05 16 21 C -0.12 -0.84 3.37 -89.80 -0.30 -1.15 16 22 C -0.13 -1.07 7.65 -25.83 -0.20 -1.27 16 23 C -0.14 -0.95 8.09 -25.83 -0.21 -1.16 16 24 C -0.13 -0.84 7.19 -25.91 -0.19 -1.02 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.40 2.91 8.78 -40.82 -0.36 2.55 16 35 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 36 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.32 7.31 -51.93 -0.38 0.94 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -32.99 373.15 -10.56 -43.55 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.64 Total: -0.41 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -3.08 Total: -21.80 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.48 Total: -34.51 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.99 -10.56 -43.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.622 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds