Wall clock time and date at job start Tue Mar 31 2020 01:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48500 * 109.47477 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46914 * 299.99920 * 3 2 1 6 6 H 1.48506 * 109.47046 * 59.99588 * 3 2 1 7 7 C 1.37888 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99563 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47266 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47351 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99938 * 359.97438 * 13 12 11 15 15 N 1.34782 * 120.00186 * 180.02562 * 13 12 11 16 16 C 1.46495 * 119.99871 * 180.27487 * 15 13 12 17 17 H 1.08997 * 109.47357 * 17.11652 * 16 15 13 18 18 C 1.53002 * 109.47147 * 257.11335 * 16 15 13 19 19 C 1.52993 * 117.49970 * 128.62107 * 18 16 15 20 20 C 1.53000 * 60.00491 * 252.51292 * 19 18 16 21 21 C 1.53003 * 109.47065 * 137.11577 * 16 15 13 22 22 C 1.53782 * 113.61284 * 279.95895 * 21 16 15 23 23 C 1.53947 * 87.02267 * 220.04913 * 22 21 16 24 24 C 1.53785 * 87.11153 * 25.36586 * 23 22 21 25 25 H 0.96993 * 120.00377 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47337 * 59.99564 * 9 7 2 27 27 H 1.09003 * 109.47182 * 299.99655 * 9 7 2 28 28 H 1.09001 * 109.47522 * 59.99492 * 10 9 7 29 29 H 1.09003 * 109.47075 * 299.99451 * 10 9 7 30 30 H 1.09001 * 109.47232 * 59.99378 * 11 10 9 31 31 H 1.09003 * 109.47182 * 299.99533 * 11 10 9 32 32 H 1.09001 * 109.47188 * 59.99737 * 12 11 10 33 33 H 1.09003 * 109.47371 * 299.99720 * 12 11 10 34 34 H 0.97000 * 119.99882 * 359.97438 * 15 13 12 35 35 H 1.09004 * 115.55057 * 274.33472 * 18 16 15 36 36 H 1.09003 * 117.49677 * 0.02562 * 19 18 16 37 37 H 1.08999 * 117.50182 * 145.02414 * 19 18 16 38 38 H 1.08998 * 117.49942 * 252.51407 * 20 19 18 39 39 H 1.09004 * 117.51865 * 107.47381 * 20 19 18 40 40 H 1.08998 * 112.85058 * 51.15852 * 21 16 15 41 41 H 1.08993 * 113.61740 * 334.57485 * 22 21 16 42 42 H 1.09003 * 113.60833 * 105.46870 * 22 21 16 43 43 H 1.09004 * 113.54056 * 270.82085 * 23 22 21 44 44 H 1.08998 * 113.66766 * 139.93504 * 23 22 21 45 45 H 1.08999 * 113.61816 * 220.08877 * 24 23 22 46 46 H 1.09001 * 113.69008 * 89.19436 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0031 13 6 1.7210 -7.4551 0.0031 14 8 0.5082 -7.4552 0.0031 15 7 2.3949 -8.6224 0.0042 16 6 1.6624 -9.8911 -0.0019 17 1 0.6317 -9.7141 -0.3091 18 6 1.6791 -10.4963 1.4032 19 6 0.3381 -10.9190 2.0062 20 6 1.0558 -9.6750 2.5336 21 6 2.3276 -10.8593 -0.9822 22 6 1.9493 -10.6056 -2.4510 23 6 1.8872 -12.1350 -2.6155 24 6 1.5984 -12.2075 -1.1068 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5568 0.8903 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6048 -0.8878 30 1 0.8539 -5.0455 -0.8877 31 1 0.8533 -5.0443 0.8923 32 1 3.1011 -6.0918 0.8931 33 1 3.1012 -6.0928 -0.8869 34 1 3.3649 -8.6224 0.0045 35 1 2.5529 -11.1020 1.6438 36 1 -0.5560 -10.7663 1.4018 37 1 0.3292 -11.8031 2.6437 38 1 1.5192 -9.7407 3.5180 39 1 0.6342 -8.7033 2.2763 40 1 3.4008 -10.9568 -0.8183 41 1 0.9846 -10.1136 -2.5747 42 1 2.7430 -10.1349 -3.0312 43 1 2.8403 -12.5813 -2.8995 44 1 1.0579 -12.4751 -3.2357 45 1 2.1092 -13.0284 -0.6033 46 1 0.5378 -12.1547 -0.8608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:59 Heat of formation + Delta-G solvation = -48.582807 kcal Electronic energy + Delta-G solvation = -21521.502640 eV Core-core repulsion = 18410.299206 eV Total energy + Delta-G solvation = -3111.203434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26677 -39.66738 -37.79187 -36.61886 -35.00125 -34.59431 -31.63828 -29.51819 -27.28532 -26.46704 -24.61627 -23.84045 -23.23045 -21.85894 -21.50152 -21.27966 -20.16787 -18.43307 -17.82956 -17.26205 -17.09952 -16.59632 -16.49381 -16.03493 -15.60689 -15.12761 -14.92686 -14.55238 -14.49640 -13.73675 -13.58668 -13.34213 -13.29593 -13.26264 -12.84832 -12.80614 -12.44107 -12.34781 -12.24688 -12.14209 -12.13140 -11.85901 -11.40855 -11.38814 -11.33025 -11.31558 -11.19506 -11.11349 -10.97956 -10.58086 -10.56454 -9.91984 -8.19346 -6.31609 1.39948 1.41092 1.54626 1.70926 2.16227 2.41623 3.00053 3.13361 3.45861 3.74438 3.80515 3.90214 3.96470 4.05052 4.07973 4.08998 4.14992 4.16790 4.39665 4.52407 4.62041 4.69195 4.69866 4.76227 4.84821 4.87707 4.88839 4.89427 4.96885 5.01058 5.10670 5.13949 5.19081 5.23413 5.29872 5.32819 5.33945 5.38094 5.53812 5.57745 5.68378 5.77357 5.87451 6.24807 6.64328 6.87113 7.36486 7.38104 8.93269 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.002657 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.603752 B =10534.980117 C =11010.154492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.095 4.095 11 C -0.094 4.094 12 C -0.129 4.129 13 C 0.513 3.487 14 O -0.589 6.589 15 N -0.708 5.708 16 C 0.178 3.822 17 H 0.062 0.938 18 C -0.150 4.150 19 C -0.167 4.167 20 C -0.189 4.189 21 C -0.106 4.106 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.123 4.123 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.017 1.017 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.416 0.584 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.011 -28.903 -0.317 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.169 4.169 13 C 0.301 3.699 14 O -0.469 6.469 15 N -0.359 5.359 16 C 0.073 3.927 17 H 0.081 0.919 18 C -0.169 4.169 19 C -0.204 4.204 20 C -0.226 4.226 21 C -0.125 4.125 22 C -0.181 4.181 23 C -0.176 4.176 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.253 0.747 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.025 -28.801 -0.327 30.184 hybrid contribution -0.152 1.336 0.025 1.345 sum 8.873 -27.465 -0.302 28.864 Atomic orbital electron populations 1.70137 1.08109 1.27714 1.51963 1.26112 0.95792 1.03803 0.94782 0.85320 0.79199 0.78332 0.77705 1.18043 1.20427 1.20448 1.21784 0.93748 0.92193 1.50121 0.91555 1.19056 0.94683 0.93864 0.94235 1.21447 0.97798 0.92756 1.01277 1.21225 0.97482 0.93749 1.00812 1.21669 0.98920 0.89792 1.06486 1.21117 0.87793 0.86767 0.74198 1.90683 1.16456 1.88252 1.51544 1.45869 1.10916 1.04537 1.74603 1.20599 0.96281 0.82525 0.93267 0.91947 1.22689 0.98100 1.03106 0.93024 1.22977 0.95053 0.98790 1.03624 1.22831 1.05382 0.95490 0.98923 1.22837 1.01119 0.95191 0.93364 1.22961 1.01071 0.97422 0.96653 1.22862 1.02584 0.95330 0.96806 1.22799 1.00532 0.96413 0.96363 0.92839 0.99785 0.99810 0.92111 0.92074 0.94052 0.94092 0.86574 0.86521 0.74731 0.85325 0.90240 0.86708 0.87779 0.91846 0.86706 0.92422 0.91169 0.88750 0.91663 0.89710 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.78 13.29 21.45 0.28 -59.50 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.05 4.97 29.84 0.15 1.20 16 10 C -0.10 -3.98 5.15 30.59 0.16 -3.82 16 11 C -0.09 -3.52 4.50 30.59 0.14 -3.38 16 12 C -0.13 -3.28 5.70 29.85 0.17 -3.11 16 13 C 0.51 14.07 7.50 87.66 0.66 14.72 16 14 O -0.59 -22.26 14.92 -3.02 -0.05 -22.30 16 15 N -0.71 -13.05 4.82 -442.53 -2.13 -15.18 16 16 C 0.18 3.19 2.21 44.99 0.10 3.29 16 17 H 0.06 1.61 6.70 -2.39 -0.02 1.59 16 18 C -0.15 -2.34 4.92 -10.79 -0.05 -2.40 16 19 C -0.17 -2.84 10.18 30.59 0.31 -2.53 16 20 C -0.19 -3.85 10.12 30.60 0.31 -3.54 16 21 C -0.11 -1.31 3.37 -10.26 -0.03 -1.35 16 22 C -0.14 -2.15 7.65 31.18 0.24 -1.91 16 23 C -0.14 -1.57 8.09 31.18 0.25 -1.31 16 24 C -0.12 -1.37 7.19 31.12 0.22 -1.14 16 25 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 32 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.42 4.77 8.78 -92.71 -0.81 3.95 16 35 H 0.13 1.41 8.11 -2.38 -0.02 1.39 16 36 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.78 7.31 -2.38 -0.02 1.77 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.15 8.00 -2.39 -0.02 1.13 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.07 0.97 8.10 -2.39 -0.02 0.96 16 Total: -1.00 -75.64 373.15 3.56 -72.09 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.11 Total: 14.45 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 3.31 Total: -36.82 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.85 Total: -74.68 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.64 3.56 -72.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.504 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds