Wall clock time and date at job start Tue Mar 31 2020 01:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 120.00032 * 2 1 4 4 H 1.48503 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47024 * 299.99622 * 3 2 1 6 6 H 1.48498 * 109.47275 * 59.99811 * 3 2 1 7 7 C 1.37880 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99598 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47495 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47486 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46838 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46979 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99733 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99854 * 179.97438 * 13 12 11 16 16 C 1.47027 * 125.65003 * 359.96496 * 15 13 12 17 17 C 1.54329 * 107.26712 * 178.97286 * 16 15 13 18 18 C 1.55153 * 102.94722 * 337.80174 * 17 16 15 19 19 H 1.08998 * 111.03763 * 277.42100 * 18 17 16 20 20 C 1.52994 * 111.00586 * 153.57460 * 18 17 16 21 21 C 1.53782 * 113.61734 * 187.80619 * 20 18 17 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 18 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 C 1.47429 * 125.64913 * 180.02562 * 15 13 12 25 25 H 0.97001 * 119.99944 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47413 * 59.99965 * 9 7 2 27 27 H 1.09003 * 109.47323 * 299.99897 * 9 7 2 28 28 H 1.09003 * 109.46692 * 59.99678 * 10 9 7 29 29 H 1.09003 * 109.46877 * 300.00324 * 10 9 7 30 30 H 1.08996 * 109.47249 * 60.00577 * 11 10 9 31 31 H 1.08991 * 109.47209 * 299.99825 * 11 10 9 32 32 H 1.08998 * 109.47433 * 60.00209 * 12 11 10 33 33 H 1.09006 * 109.47514 * 299.99882 * 12 11 10 34 34 H 1.08997 * 109.88205 * 298.38598 * 16 15 13 35 35 H 1.08994 * 109.88187 * 59.40403 * 16 15 13 36 36 H 1.09007 * 110.71679 * 219.43962 * 17 16 15 37 37 H 1.08995 * 110.71966 * 96.17465 * 17 16 15 38 38 H 1.08997 * 112.90864 * 319.06464 * 20 18 17 39 39 H 1.09001 * 113.61250 * 105.47049 * 21 20 18 40 40 H 1.08996 * 113.68722 * 334.58363 * 21 20 18 41 41 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 42 42 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 43 43 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 44 44 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 45 45 H 1.08997 * 110.36722 * 85.25471 * 24 15 13 46 46 H 1.09002 * 110.36331 * 322.93513 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1499 0.0005 13 6 1.7209 -7.4551 0.0005 14 8 0.5081 -7.4550 0.0005 15 7 2.3948 -8.6222 -0.0005 16 6 3.8580 -8.7669 -0.0024 17 6 4.1688 -10.2784 0.0234 18 6 2.8693 -10.8906 0.6096 19 1 2.8653 -10.8316 1.6979 20 6 2.6836 -12.3351 0.1408 21 6 1.3235 -12.9387 0.5289 22 6 2.0782 -14.2432 0.8348 23 6 3.3249 -13.3758 1.0768 24 6 1.7870 -9.9654 -0.0012 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6240 -2.5566 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 0.8533 -5.0451 -0.8886 31 1 0.8539 -5.0445 0.8913 32 1 3.1017 -6.0922 0.8900 33 1 3.1005 -6.0923 -0.8899 34 1 4.2736 -8.3184 -0.9047 35 1 4.2793 -8.2844 0.8794 36 1 5.0198 -10.4860 0.6722 37 1 4.3508 -10.6519 -0.9843 38 1 2.9407 -12.4768 -0.9089 39 1 0.6284 -13.0220 -0.3065 40 1 0.8747 -12.4774 1.4086 41 1 1.7218 -14.7545 1.7290 42 1 2.1685 -14.9073 -0.0249 43 1 3.4254 -13.0335 2.1067 44 1 4.2431 -13.8115 0.6829 45 1 1.5532 -10.2754 -1.0196 46 1 0.8880 -9.9752 0.6151 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591125447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:13 Heat of formation + Delta-G solvation = -50.172024 kcal Electronic energy + Delta-G solvation = -21226.446205 eV Core-core repulsion = 18115.173857 eV Total energy + Delta-G solvation = -3111.272348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.43020 -39.11900 -37.06795 -34.84661 -32.65748 -31.97196 -29.86019 -29.29190 -26.39323 -25.90269 -24.85913 -23.28615 -21.96056 -20.91902 -19.96486 -19.87091 -19.07247 -16.97236 -16.61959 -16.15039 -15.93424 -15.45697 -15.02438 -14.48442 -14.38467 -14.08812 -13.81816 -13.20131 -12.99729 -12.89241 -12.70993 -12.56133 -12.32783 -12.21550 -12.01822 -11.62916 -11.57384 -11.38747 -11.12425 -10.97003 -10.90450 -10.52443 -10.49432 -10.45840 -10.43115 -10.36039 -9.75042 -9.57768 -9.18770 -8.94173 -8.71951 -8.28524 -5.93031 -3.95366 2.75934 2.93280 3.34593 3.41623 3.45705 3.90307 4.17990 4.20520 4.39935 4.42478 4.50689 4.63120 4.68709 4.94768 4.98005 4.99690 5.15806 5.32149 5.34319 5.37101 5.37738 5.39522 5.41951 5.42522 5.46942 5.52880 5.57127 5.63367 5.71636 5.80086 5.89129 5.93459 6.12473 6.18292 6.19015 6.36572 6.59050 6.88051 7.05641 7.23535 7.47937 7.77233 7.93323 8.08791 8.26909 8.50682 9.12643 9.68115 11.18332 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.054629 B = 0.002286 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.429281 B =12247.877310 C =12629.411444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.527 3.473 14 O -0.535 6.535 15 N -0.628 5.628 16 C 0.100 3.900 17 C -0.126 4.126 18 C -0.092 4.092 19 H 0.085 0.915 20 C -0.099 4.099 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.135 4.135 24 C 0.112 3.888 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 -29.422 0.899 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.317 3.683 14 O -0.411 6.411 15 N -0.364 5.364 16 C -0.024 4.024 17 C -0.164 4.164 18 C -0.111 4.111 19 H 0.103 0.897 20 C -0.118 4.118 21 C -0.176 4.176 22 C -0.182 4.182 23 C -0.172 4.172 24 C -0.010 4.010 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.872 -29.199 0.896 30.530 hybrid contribution 0.528 0.936 -0.029 1.075 sum 9.399 -28.264 0.866 29.798 Atomic orbital electron populations 1.69985 1.06041 1.26366 1.51065 1.25053 0.94849 0.99246 0.95521 0.86554 0.80076 0.83938 0.77524 1.19786 1.21065 1.21071 1.21322 0.93018 0.91189 1.50189 0.92699 1.19105 0.94080 0.91283 0.97330 1.21646 0.99062 0.93986 1.00040 1.21462 0.97038 0.92710 1.02949 1.21775 0.99991 0.91740 1.03791 1.20820 0.87909 0.84465 0.75082 1.90707 1.14058 1.87056 1.49294 1.48625 1.07122 1.05763 1.74905 1.22035 0.81076 0.97149 1.02098 1.22696 0.97946 0.93670 1.02046 1.22401 0.94621 0.93632 1.00422 0.89670 1.22530 0.97163 0.92336 0.99736 1.22945 0.96284 0.96545 1.01872 1.22818 0.97059 0.96568 1.01726 1.22980 0.97502 0.96903 0.99859 1.22168 0.96648 0.81397 1.00837 0.93116 0.96581 0.96574 0.93502 0.93492 0.91818 0.91813 0.89284 0.89285 0.91233 0.91215 0.89978 0.90465 0.88967 0.91369 0.89929 0.91531 0.90296 0.90057 0.91520 0.91708 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 11 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 12 C -0.13 -1.92 4.89 -27.88 -0.14 -2.06 16 13 C 0.53 8.14 7.85 -10.98 -0.09 8.05 16 14 O -0.54 -10.50 16.24 5.56 0.09 -10.41 16 15 N -0.63 -7.38 3.33 -170.50 -0.57 -7.95 16 16 C 0.10 0.81 6.49 -3.06 -0.02 0.79 16 17 C -0.13 -0.75 6.42 -24.90 -0.16 -0.91 16 18 C -0.09 -0.63 2.84 -88.46 -0.25 -0.88 16 19 H 0.08 0.61 7.95 -51.93 -0.41 0.20 16 20 C -0.10 -0.57 3.23 -89.71 -0.29 -0.86 16 21 C -0.14 -0.85 7.19 -25.92 -0.19 -1.04 16 22 C -0.14 -0.77 8.08 -25.92 -0.21 -0.98 16 23 C -0.14 -0.70 7.65 -25.82 -0.20 -0.89 16 24 C 0.11 1.13 5.94 -2.51 -0.01 1.11 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 37 H 0.08 0.42 7.93 -51.93 -0.41 0.01 16 38 H 0.09 0.52 7.99 -51.93 -0.41 0.10 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.42 7.96 -51.93 -0.41 0.01 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 46 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -33.94 367.58 -10.37 -44.31 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -8.79 Total: -5.69 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.36 Total: -15.80 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.17 Total: -35.06 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.94 -10.37 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591125447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.863 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds