Wall clock time and date at job start Tue Mar 31 2020 01:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48505 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47311 * 299.99782 * 3 2 1 6 6 H 1.48502 * 109.47227 * 59.99857 * 3 2 1 7 7 C 1.38952 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99863 * 197.99418 * 7 2 1 9 9 N 1.37100 * 119.99993 * 18.00355 * 7 2 1 10 10 C 1.34771 * 120.00308 * 44.47600 * 9 7 2 11 11 O 1.21292 * 120.00049 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99944 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.46926 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46908 * 180.02562 * 13 12 10 15 15 C 1.54067 * 108.87590 * 297.98133 * 14 13 12 16 16 C 1.54073 * 112.81505 * 197.50373 * 15 14 13 17 17 C 1.50467 * 112.49906 * 318.28600 * 16 15 14 18 18 C 1.54238 * 108.52182 * 94.14926 * 17 16 15 19 19 C 1.45549 * 112.40826 * 280.01107 * 18 17 16 20 20 C 1.50466 * 108.87537 * 175.00259 * 14 13 12 21 21 C 1.46497 * 119.99547 * 224.48292 * 9 7 2 22 22 C 1.53005 * 117.50205 * 3.27286 * 21 9 7 23 23 C 1.53002 * 117.50046 * 294.61440 * 21 9 7 24 24 H 0.97005 * 119.99700 * 354.96704 * 1 2 3 25 25 H 1.08996 * 109.46846 * 60.00820 * 12 10 9 26 26 H 1.09000 * 109.47013 * 300.00906 * 12 10 9 27 27 H 1.09006 * 109.46793 * 60.00583 * 13 12 10 28 28 H 1.08990 * 109.47450 * 300.00602 * 13 12 10 29 29 H 1.08997 * 108.76430 * 56.48812 * 14 13 12 30 30 H 1.09001 * 108.81642 * 318.36270 * 15 14 13 31 31 H 1.08999 * 108.81699 * 76.75699 * 15 14 13 32 32 H 1.08992 * 108.87727 * 197.50218 * 16 15 14 33 33 H 1.09004 * 108.87148 * 79.06251 * 16 15 14 34 34 H 1.09004 * 109.63075 * 334.44059 * 17 16 15 35 35 H 1.08999 * 109.62838 * 213.85738 * 17 16 15 36 36 H 1.09002 * 108.89830 * 40.76531 * 18 17 16 37 37 H 1.09003 * 108.89764 * 159.35803 * 18 17 16 38 38 H 1.09004 * 108.89659 * 182.69119 * 19 18 17 39 39 H 1.08997 * 108.89112 * 301.18282 * 19 18 17 40 40 H 1.08998 * 109.63091 * 95.21770 * 20 14 13 41 41 H 1.08998 * 109.63243 * 334.64033 * 20 14 13 42 42 H 1.09002 * 115.55480 * 148.94098 * 21 9 7 43 43 H 1.09000 * 117.49677 * 0.02562 * 22 21 9 44 44 H 1.08998 * 117.50327 * 145.01758 * 22 21 9 45 45 H 1.09002 * 117.49719 * 214.98197 * 23 21 9 46 46 H 1.08999 * 117.49942 * 359.97302 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0492 -1.2262 0.2895 9 7 1.3736 -2.3618 -0.3659 10 6 0.5767 -2.3786 -1.4527 11 8 0.4218 -1.3690 -2.1068 12 6 -0.1211 -3.6521 -1.8557 13 6 -0.9560 -3.4002 -3.1129 14 6 -1.6649 -4.6930 -3.5217 15 6 -0.6040 -5.7586 -3.8572 16 6 -1.1743 -6.9324 -4.6763 17 6 -2.5268 -7.3732 -4.1859 18 6 -3.6081 -6.6462 -5.0113 19 6 -3.8347 -5.2840 -4.5515 20 6 -2.5762 -4.4021 -4.6832 21 6 1.5610 -3.5812 0.4240 22 6 2.4156 -3.4793 1.6890 23 6 2.9615 -4.1967 0.4518 24 1 -0.4850 0.8369 0.0737 25 1 -0.7727 -3.9811 -1.0463 26 1 0.6210 -4.4236 -2.0612 27 1 -0.3040 -3.0714 -3.9222 28 1 -1.6979 -2.6286 -2.9077 29 1 -2.2647 -5.0446 -2.6822 30 1 0.1979 -5.2892 -4.4271 31 1 -0.1914 -6.1490 -2.9269 32 1 -0.4848 -7.7741 -4.6134 33 1 -1.2598 -6.6261 -5.7189 34 1 -2.6360 -7.1160 -3.1323 35 1 -2.6300 -8.4505 -4.3154 36 1 -3.2964 -6.6190 -6.0555 37 1 -4.5426 -7.2024 -4.9367 38 1 -4.6387 -4.8419 -5.1400 39 1 -4.1391 -5.3107 -3.5053 40 1 -2.0638 -4.6324 -5.6173 41 1 -2.8629 -3.3506 -4.6693 42 1 0.7110 -4.2634 0.4446 43 1 2.8381 -2.5048 1.9337 44 1 2.1282 -4.0945 2.5416 45 1 3.0328 -5.2837 0.4910 46 1 3.7433 -3.6945 -0.1179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593969439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:29 Heat of formation + Delta-G solvation = -49.100714 kcal Electronic energy + Delta-G solvation = -22815.181777 eV Core-core repulsion = 19703.955885 eV Total energy + Delta-G solvation = -3111.225892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.59979 -39.82393 -37.78480 -35.50831 -34.62369 -33.09331 -32.85126 -31.03478 -27.49862 -25.97968 -25.36022 -23.31995 -22.97462 -22.63336 -21.41936 -20.77167 -19.76199 -18.23375 -17.77696 -16.82300 -16.51269 -16.21265 -15.98600 -15.60061 -15.39936 -15.16425 -14.69811 -14.50393 -14.04494 -13.87888 -13.70243 -13.44116 -13.23948 -12.96087 -12.86382 -12.73194 -12.64744 -12.28310 -12.21488 -12.07977 -11.91874 -11.64888 -11.54339 -11.43726 -11.20413 -11.17150 -11.05988 -11.00481 -10.92419 -10.70582 -9.89354 -8.94367 -8.19756 -5.97854 1.33134 1.40867 1.48580 2.26579 2.44621 3.10778 3.15379 3.38417 3.73773 3.82140 3.89275 4.13434 4.15953 4.19256 4.23470 4.30866 4.40543 4.43521 4.46508 4.54167 4.57019 4.63558 4.69283 4.79909 4.90186 4.90561 4.99487 5.06482 5.09437 5.21902 5.26413 5.28649 5.32412 5.36465 5.39623 5.40745 5.46500 5.46925 5.49451 5.51012 5.55382 5.65115 5.71146 6.21823 7.05974 7.24544 7.74293 8.41682 8.89411 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.004438 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.038496 B = 6307.604834 C = 7189.320538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.021 3.979 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.356 4.356 8 H 0.075 0.925 9 N -0.448 5.448 10 C 0.463 3.537 11 O -0.592 6.592 12 C -0.115 4.115 13 C -0.085 4.085 14 C -0.072 4.072 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.113 4.113 21 C 0.045 3.955 22 C -0.172 4.172 23 C -0.179 4.179 24 H 0.258 0.742 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.126 0.874 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 -17.106 -5.293 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.185 4.185 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.484 4.484 8 H 0.092 0.908 9 N -0.169 5.169 10 C 0.253 3.747 11 O -0.474 6.474 12 C -0.155 4.155 13 C -0.123 4.123 14 C -0.091 4.091 15 C -0.148 4.148 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.060 4.060 22 C -0.210 4.210 23 C -0.218 4.218 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.136 0.864 45 H 0.144 0.856 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.072 -16.472 -5.675 17.891 hybrid contribution 0.336 1.610 0.196 1.656 sum -3.737 -14.862 -5.479 16.275 Atomic orbital electron populations 1.69951 1.08013 1.27376 1.45658 1.26057 0.95516 1.02586 0.94354 0.85287 0.79298 0.78975 0.77116 1.18161 1.22261 1.19692 1.19117 0.94520 0.85379 1.49354 0.90766 1.43077 1.43982 1.07786 1.22074 1.21028 0.82465 0.90490 0.80715 1.90465 1.64457 1.37554 1.54893 1.21550 0.99582 0.95329 0.99047 1.21371 0.97819 0.97308 0.95846 1.20913 0.96357 0.93472 0.98345 1.21990 0.97210 0.95272 1.00373 1.21316 0.97130 0.97151 0.99508 1.21352 0.94265 0.99900 0.99962 1.20479 0.99404 0.95482 0.99871 1.20458 0.97043 0.96073 1.01619 1.21387 0.96219 0.98982 0.98424 1.22012 0.95003 0.90662 0.98343 1.23115 1.03774 1.02023 0.92088 1.23322 0.96802 1.00450 1.01178 0.93304 0.89920 0.88283 0.93782 0.94741 0.91209 0.93147 0.91698 0.91536 0.92284 0.92052 0.90934 0.92050 0.91575 0.92078 0.92548 0.91444 0.93423 0.85697 0.90295 0.86449 0.85588 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.80 11.74 21.66 0.25 -54.55 16 2 C 0.02 1.21 4.39 84.93 0.37 1.58 16 3 Si 0.97 47.07 29.59 68.60 2.03 49.10 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.36 -20.22 7.91 84.04 0.66 -19.56 16 8 H 0.07 4.10 7.27 -2.91 -0.02 4.08 16 9 N -0.45 -23.05 2.83 -613.12 -1.74 -24.78 16 10 C 0.46 24.36 6.96 87.66 0.61 24.97 16 11 O -0.59 -37.00 13.75 -3.07 -0.04 -37.04 16 12 C -0.11 -4.40 4.04 29.85 0.12 -4.28 16 13 C -0.09 -3.10 3.71 30.60 0.11 -2.99 16 14 C -0.07 -1.89 1.71 -11.25 -0.02 -1.91 16 15 C -0.11 -2.48 4.42 31.32 0.14 -2.34 16 16 C -0.11 -2.01 5.31 30.14 0.16 -1.85 16 17 C -0.12 -1.89 5.61 30.19 0.17 -1.72 16 18 C -0.11 -1.86 5.26 28.74 0.15 -1.71 16 19 C -0.11 -2.24 5.26 28.74 0.15 -2.09 16 20 C -0.11 -2.72 5.13 30.19 0.15 -2.56 16 21 C 0.04 1.75 5.87 44.99 0.26 2.01 16 22 C -0.17 -5.96 9.80 30.62 0.30 -5.66 16 23 C -0.18 -5.67 10.36 30.62 0.32 -5.36 16 24 H 0.26 15.54 8.32 -92.70 -0.77 14.77 16 25 H 0.08 2.94 7.56 -2.39 -0.02 2.93 16 26 H 0.10 3.24 6.79 -2.39 -0.02 3.22 16 27 H 0.04 1.73 8.03 -2.38 -0.02 1.71 16 28 H 0.03 1.44 7.91 -2.39 -0.02 1.43 16 29 H 0.07 1.78 6.63 -2.39 -0.02 1.76 16 30 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 31 H 0.06 1.39 7.36 -2.39 -0.02 1.37 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.04 6.63 -2.38 -0.02 1.03 16 34 H 0.06 1.08 6.98 -2.38 -0.02 1.06 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.96 7.47 -2.39 -0.02 0.95 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.15 7.47 -2.39 -0.02 1.13 16 40 H 0.07 1.54 6.98 -2.39 -0.02 1.52 16 41 H 0.05 1.31 7.59 -2.39 -0.02 1.29 16 42 H 0.13 4.21 6.96 -2.39 -0.02 4.19 16 43 H 0.08 3.18 6.73 -2.39 -0.02 3.16 16 44 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -73.43 346.60 5.11 -68.33 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.93 Total: 22.43 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 3.67 Total: -23.47 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -1.48 Total: -79.33 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.04 Total: -37.04 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -73.43 5.11 -68.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593969439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.225 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds