Wall clock time and date at job start Tue Mar 31 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.52720 * 2 1 4 4 C 1.54254 * 110.81826 * 237.04478 * 2 1 3 5 5 N 1.46895 * 106.42835 * 270.28563 * 4 2 1 6 6 C 1.34777 * 125.36450 * 162.09742 * 5 4 2 7 7 O 1.21280 * 120.00180 * 179.70011 * 6 5 4 8 8 C 1.50695 * 120.00231 * 359.69271 * 6 5 4 9 9 C 1.53001 * 109.47575 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47372 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47122 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00226 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99757 * 180.27736 * 11 10 9 14 14 N 1.31506 * 120.00173 * 359.71832 * 13 11 10 15 15 Si 1.86808 * 119.99711 * 179.72445 * 13 11 10 16 16 H 1.48499 * 109.47177 * 89.99515 * 15 13 11 17 17 H 1.48500 * 109.46914 * 209.99696 * 15 13 11 18 18 H 1.48497 * 109.46820 * 329.99730 * 15 13 11 19 19 C 1.46068 * 109.26887 * 341.83576 * 5 4 2 20 20 H 1.09009 * 110.24382 * 120.43349 * 19 5 4 21 21 C 1.53247 * 111.53570 * 243.58222 * 19 5 4 22 22 C 1.53544 * 106.39156 * 91.92684 * 21 19 5 23 23 C 1.53356 * 107.29315 * 16.79146 * 22 21 19 24 24 C 1.53879 * 107.67417 * 358.46950 * 23 22 21 25 25 H 1.09003 * 113.15752 * 109.93298 * 24 23 22 26 26 H 1.09005 * 109.46494 * 297.18349 * 1 2 3 27 27 H 1.09001 * 109.47300 * 57.18412 * 1 2 3 28 28 H 1.08995 * 109.46644 * 177.18973 * 1 2 3 29 29 H 1.08999 * 109.46903 * 194.84455 * 3 2 1 30 30 H 1.08999 * 109.46934 * 314.84637 * 3 2 1 31 31 H 1.08996 * 109.47127 * 74.85077 * 3 2 1 32 32 H 1.08998 * 110.20374 * 150.99756 * 4 2 1 33 33 H 1.08996 * 109.98772 * 29.46088 * 4 2 1 34 34 H 1.09004 * 109.46717 * 60.00283 * 8 6 5 35 35 H 1.09005 * 109.47731 * 300.00612 * 8 6 5 36 36 H 1.08995 * 109.47275 * 60.00099 * 9 8 6 37 37 H 1.09006 * 109.46595 * 300.00167 * 9 8 6 38 38 H 1.09004 * 109.47208 * 59.99871 * 10 9 8 39 39 H 1.08999 * 109.47280 * 299.99700 * 10 9 8 40 40 H 0.97004 * 119.99922 * 180.02562 * 14 13 11 41 41 H 1.09000 * 110.06689 * 211.15837 * 21 19 5 42 42 H 1.08997 * 110.07475 * 332.69167 * 21 19 5 43 43 H 1.09006 * 109.87517 * 257.36766 * 22 21 19 44 44 H 1.08993 * 109.87643 * 136.22087 * 22 21 19 45 45 H 1.08994 * 109.82039 * 238.92619 * 23 22 21 46 46 H 1.09001 * 109.87793 * 118.04361 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4329 0.0000 4 6 2.0783 -0.7843 -1.2098 5 7 2.2193 -2.1792 -0.7713 6 6 2.3364 -3.2454 -1.5874 7 8 2.4535 -4.3578 -1.1187 8 6 2.3216 -3.0554 -3.0822 9 6 2.4687 -4.4139 -3.7706 10 6 2.4544 -4.2208 -5.2883 11 6 2.5987 -5.5590 -5.9662 12 1 2.6918 -6.4572 -5.3739 13 6 2.6181 -5.6358 -7.3428 14 7 2.5051 -4.5420 -8.0641 15 14 2.8047 -7.2937 -8.1831 16 1 1.4624 -7.8841 -8.4169 17 1 3.4999 -7.1143 -9.4830 18 1 3.6004 -8.2006 -7.3173 19 6 2.2191 -2.2279 0.6886 20 1 1.3945 -2.8453 1.0452 21 6 3.5535 -2.7473 1.2343 22 6 4.4312 -1.5118 1.4810 23 6 3.5047 -0.2898 1.4944 24 6 2.0743 -0.7850 1.2173 25 1 1.4213 -0.7177 2.0875 26 1 -0.3632 0.4695 0.9142 27 1 -0.3634 0.5569 -0.8637 28 1 -0.3632 -1.0264 -0.0504 29 1 3.1242 1.4248 -0.2633 30 1 1.5152 2.0272 -0.7286 31 1 1.9424 1.8673 0.9919 32 1 3.0483 -0.3866 -1.5081 33 1 1.3770 -0.7235 -2.0421 34 1 3.1486 -2.4082 -3.3744 35 1 1.3787 -2.5973 -3.3811 36 1 1.6416 -5.0607 -3.4784 37 1 3.4116 -4.8722 -3.4719 38 1 3.2818 -3.5741 -5.5802 39 1 1.5118 -3.7623 -5.5873 40 1 2.5184 -4.5962 -9.0325 41 1 3.3918 -3.2840 2.1692 42 1 4.0270 -3.4027 0.5033 43 1 5.1644 -1.4123 0.6805 44 1 4.9382 -1.6032 2.4414 45 1 3.8090 0.4132 0.7191 46 1 3.5453 0.1954 2.4696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594365510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:48 Heat of formation + Delta-G solvation = -65.232242 kcal Electronic energy + Delta-G solvation = -22663.927705 eV Core-core repulsion = 19552.002297 eV Total energy + Delta-G solvation = -3111.925408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15129 -38.45792 -35.17541 -34.13220 -33.87767 -31.96714 -29.18820 -28.35993 -27.64458 -27.09202 -26.14810 -23.77871 -21.38283 -20.93270 -19.94228 -19.04203 -18.66523 -16.94586 -16.30913 -15.94180 -15.51863 -15.20867 -14.86357 -14.42317 -14.31018 -14.22922 -13.59612 -13.36783 -12.96372 -12.74034 -12.31251 -12.20995 -12.07443 -11.91403 -11.82001 -11.67719 -11.54795 -11.32406 -11.25624 -10.97758 -10.78947 -10.75060 -10.57917 -10.54238 -10.50475 -10.28794 -9.63192 -9.57718 -9.21852 -8.97440 -8.50175 -8.29447 -5.95181 -3.96362 2.96933 3.14461 3.36610 3.42224 3.47393 4.02365 4.14321 4.35610 4.51507 4.69705 4.74011 4.87293 4.99072 5.12298 5.21213 5.31322 5.32332 5.37026 5.40901 5.44283 5.51976 5.53190 5.57017 5.64739 5.67675 5.74044 5.76200 5.78829 5.80416 5.90303 5.92685 5.99472 6.10870 6.19093 6.19613 6.28750 6.58936 6.76987 6.97899 7.19758 7.68002 7.74755 7.87112 8.05803 8.49242 8.50629 9.10704 9.67428 11.16360 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.003437 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.059817 B = 8144.745129 C = 8628.168049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C -0.139 4.139 4 C 0.111 3.889 5 N -0.614 5.614 6 C 0.528 3.472 7 O -0.535 6.535 8 C -0.133 4.133 9 C -0.095 4.095 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.141 3.859 20 H 0.071 0.929 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.088 4.088 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 14.995 20.555 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 C -0.196 4.196 4 C -0.013 4.013 5 N -0.349 5.349 6 C 0.319 3.681 7 O -0.411 6.411 8 C -0.173 4.173 9 C -0.133 4.133 10 C -0.016 4.016 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C 0.037 3.963 20 H 0.089 0.911 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.164 4.164 24 C -0.107 4.107 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.909 14.366 20.557 25.096 hybrid contribution 0.080 -0.794 -0.568 0.980 sum -0.829 13.572 19.989 24.175 Atomic orbital electron populations 1.21825 0.93446 1.02292 1.01971 1.21604 0.96140 0.95292 0.94384 1.21940 1.01082 0.94333 1.02230 1.22174 1.00796 0.81327 0.96967 1.48230 1.74019 1.06858 1.05825 1.20949 0.74929 0.82812 0.89448 1.90673 1.48947 1.23808 1.77670 1.21829 1.03471 1.02770 0.89242 1.21450 1.01535 0.92421 0.97858 1.19126 0.97081 0.97124 0.88293 1.21279 1.49415 0.93516 0.91332 0.92589 1.25016 0.95430 0.96444 0.97603 1.69962 1.51035 1.27216 1.05557 0.86598 0.78203 0.84398 0.78859 1.20680 1.21271 1.19835 1.21511 0.97682 0.96077 0.81073 0.91052 1.22221 0.95454 0.97881 1.01366 1.21909 0.98179 0.94369 1.01345 1.22327 0.93624 0.98324 1.02144 1.22725 0.97196 0.93369 0.97390 0.88599 0.92364 0.92147 0.92318 0.91648 0.92219 0.92033 0.91548 0.90497 0.89590 0.89573 0.92730 0.92750 0.96633 0.96647 0.93099 0.91298 0.90481 0.92063 0.92013 0.90223 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.48 37.16 0.32 -0.75 16 2 C -0.07 -0.59 0.76 -152.94 -0.12 -0.70 16 3 C -0.14 -0.86 7.59 37.16 0.28 -0.58 16 4 C 0.11 1.14 5.45 -3.17 -0.02 1.12 16 5 N -0.61 -8.20 3.07 -164.39 -0.51 -8.71 16 6 C 0.53 9.13 7.45 -10.99 -0.08 9.04 16 7 O -0.54 -11.17 15.35 5.56 0.09 -11.09 16 8 C -0.13 -2.35 4.74 -27.89 -0.13 -2.48 16 9 C -0.09 -2.12 4.44 -26.73 -0.12 -2.23 16 10 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 11 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 15 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.14 1.65 3.38 -67.33 -0.23 1.42 16 20 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 21 C -0.13 -1.53 6.31 -26.32 -0.17 -1.70 16 22 C -0.12 -1.13 6.77 -26.26 -0.18 -1.31 16 23 C -0.13 -0.98 5.55 -26.09 -0.14 -1.13 16 24 C -0.09 -0.74 3.35 -88.54 -0.30 -1.04 16 25 H 0.10 0.70 8.05 -51.93 -0.42 0.29 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.40 5.82 -51.93 -0.30 0.10 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.05 -51.93 -0.42 -0.08 16 32 H 0.07 0.65 7.65 -51.93 -0.40 0.26 16 33 H 0.08 0.78 7.43 -51.93 -0.39 0.40 16 34 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.09 1.40 7.89 -51.93 -0.41 0.99 16 36 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 37 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.14 6.92 -51.93 -0.36 0.78 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.59 4.91 -51.93 -0.25 0.33 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -32.86 353.02 -9.22 -42.08 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -8.40 Total: -4.32 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.43 Total: -13.90 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.23 Total: -35.33 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.86 -9.22 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594365510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.156 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds