Wall clock time and date at job start Tue Mar 31 2020 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.52720 * 2 1 4 4 C 1.54254 * 110.81826 * 237.04478 * 2 1 3 5 5 N 1.46895 * 106.42835 * 270.28563 * 4 2 1 6 6 C 1.34777 * 125.36450 * 162.09742 * 5 4 2 7 7 O 1.21280 * 120.00180 * 179.70011 * 6 5 4 8 8 C 1.50695 * 120.00231 * 359.69271 * 6 5 4 9 9 C 1.53001 * 109.47575 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47372 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47122 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00226 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99757 * 180.27736 * 11 10 9 14 14 N 1.31506 * 120.00173 * 359.71832 * 13 11 10 15 15 Si 1.86808 * 119.99711 * 179.72445 * 13 11 10 16 16 H 1.48499 * 109.47177 * 89.99515 * 15 13 11 17 17 H 1.48500 * 109.46914 * 209.99696 * 15 13 11 18 18 H 1.48497 * 109.46820 * 329.99730 * 15 13 11 19 19 C 1.46068 * 109.26887 * 341.83576 * 5 4 2 20 20 H 1.09009 * 110.24382 * 120.43349 * 19 5 4 21 21 C 1.53247 * 111.53570 * 243.58222 * 19 5 4 22 22 C 1.53544 * 106.39156 * 91.92684 * 21 19 5 23 23 C 1.53356 * 107.29315 * 16.79146 * 22 21 19 24 24 C 1.53879 * 107.67417 * 358.46950 * 23 22 21 25 25 H 1.09003 * 113.15752 * 109.93298 * 24 23 22 26 26 H 1.09005 * 109.46494 * 297.18349 * 1 2 3 27 27 H 1.09001 * 109.47300 * 57.18412 * 1 2 3 28 28 H 1.08995 * 109.46644 * 177.18973 * 1 2 3 29 29 H 1.08999 * 109.46903 * 194.84455 * 3 2 1 30 30 H 1.08999 * 109.46934 * 314.84637 * 3 2 1 31 31 H 1.08996 * 109.47127 * 74.85077 * 3 2 1 32 32 H 1.08998 * 110.20374 * 150.99756 * 4 2 1 33 33 H 1.08996 * 109.98772 * 29.46088 * 4 2 1 34 34 H 1.09004 * 109.46717 * 60.00283 * 8 6 5 35 35 H 1.09005 * 109.47731 * 300.00612 * 8 6 5 36 36 H 1.08995 * 109.47275 * 60.00099 * 9 8 6 37 37 H 1.09006 * 109.46595 * 300.00167 * 9 8 6 38 38 H 1.09004 * 109.47208 * 59.99871 * 10 9 8 39 39 H 1.08999 * 109.47280 * 299.99700 * 10 9 8 40 40 H 0.97004 * 119.99922 * 180.02562 * 14 13 11 41 41 H 1.09000 * 110.06689 * 211.15837 * 21 19 5 42 42 H 1.08997 * 110.07475 * 332.69167 * 21 19 5 43 43 H 1.09006 * 109.87517 * 257.36766 * 22 21 19 44 44 H 1.08993 * 109.87643 * 136.22087 * 22 21 19 45 45 H 1.08994 * 109.82039 * 238.92619 * 23 22 21 46 46 H 1.09001 * 109.87793 * 118.04361 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4329 0.0000 4 6 2.0783 -0.7843 -1.2098 5 7 2.2193 -2.1792 -0.7713 6 6 2.3364 -3.2454 -1.5874 7 8 2.4535 -4.3578 -1.1187 8 6 2.3216 -3.0554 -3.0822 9 6 2.4687 -4.4139 -3.7706 10 6 2.4544 -4.2208 -5.2883 11 6 2.5987 -5.5590 -5.9662 12 1 2.6918 -6.4572 -5.3739 13 6 2.6181 -5.6358 -7.3428 14 7 2.5051 -4.5420 -8.0641 15 14 2.8047 -7.2937 -8.1831 16 1 1.4624 -7.8841 -8.4169 17 1 3.4999 -7.1143 -9.4830 18 1 3.6004 -8.2006 -7.3173 19 6 2.2191 -2.2279 0.6886 20 1 1.3945 -2.8453 1.0452 21 6 3.5535 -2.7473 1.2343 22 6 4.4312 -1.5118 1.4810 23 6 3.5047 -0.2898 1.4944 24 6 2.0743 -0.7850 1.2173 25 1 1.4213 -0.7177 2.0875 26 1 -0.3632 0.4695 0.9142 27 1 -0.3634 0.5569 -0.8637 28 1 -0.3632 -1.0264 -0.0504 29 1 3.1242 1.4248 -0.2633 30 1 1.5152 2.0272 -0.7286 31 1 1.9424 1.8673 0.9919 32 1 3.0483 -0.3866 -1.5081 33 1 1.3770 -0.7235 -2.0421 34 1 3.1486 -2.4082 -3.3744 35 1 1.3787 -2.5973 -3.3811 36 1 1.6416 -5.0607 -3.4784 37 1 3.4116 -4.8722 -3.4719 38 1 3.2818 -3.5741 -5.5802 39 1 1.5118 -3.7623 -5.5873 40 1 2.5184 -4.5962 -9.0325 41 1 3.3918 -3.2840 2.1692 42 1 4.0270 -3.4027 0.5033 43 1 5.1644 -1.4123 0.6805 44 1 4.9382 -1.6032 2.4414 45 1 3.8090 0.4132 0.7191 46 1 3.5453 0.1954 2.4696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594365510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:47 Heat of formation + Delta-G solvation = -83.503889 kcal Electronic energy + Delta-G solvation = -22664.720023 eV Core-core repulsion = 19552.002297 eV Total energy + Delta-G solvation = -3112.717726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08147 -39.73829 -36.21983 -35.86176 -34.91639 -33.99717 -30.41054 -29.25989 -28.90106 -27.76076 -27.20097 -25.64307 -22.77700 -21.75836 -21.45321 -19.95661 -19.70772 -18.51082 -17.96308 -17.22158 -16.55267 -16.40265 -16.29840 -15.95179 -15.36239 -15.04059 -14.68867 -14.61628 -14.28782 -13.79878 -13.75837 -13.55476 -13.16829 -12.93014 -12.86229 -12.68593 -12.60595 -12.54739 -12.49001 -12.39393 -12.30441 -12.00731 -11.76065 -11.60111 -11.50637 -11.44569 -11.28290 -11.22988 -10.93312 -10.70662 -10.55839 -9.62495 -8.21480 -6.31718 1.38531 1.39898 1.51520 1.60067 2.00465 2.40803 3.11308 3.25390 3.39704 3.62161 3.80819 3.97486 4.04493 4.14685 4.18735 4.19953 4.31802 4.45737 4.53508 4.61268 4.64722 4.71094 4.75535 4.77079 4.86771 4.90743 4.92339 5.00344 5.04328 5.05956 5.10463 5.10809 5.15169 5.15793 5.25875 5.32913 5.39884 5.49747 5.50980 5.57641 5.60835 5.71824 5.83808 6.25389 6.50050 6.82918 7.17092 7.36900 8.90161 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.003437 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.059817 B = 8144.745129 C = 8628.168049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.135 4.135 4 C 0.098 3.902 5 N -0.605 5.605 6 C 0.526 3.474 7 O -0.582 6.582 8 C -0.123 4.123 9 C -0.080 4.080 10 C 0.028 3.972 11 C -0.549 4.549 12 H 0.050 0.950 13 C 0.004 3.996 14 N -0.928 5.928 15 Si 0.962 3.038 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C 0.130 3.870 20 H 0.056 0.944 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.078 4.078 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 16.867 21.611 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.192 4.192 4 C -0.024 4.024 5 N -0.338 5.338 6 C 0.316 3.684 7 O -0.462 6.462 8 C -0.163 4.163 9 C -0.119 4.119 10 C -0.009 4.009 11 C -0.587 4.587 12 H 0.068 0.932 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.787 3.213 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.193 1.193 19 C 0.026 3.974 20 H 0.074 0.926 21 C -0.171 4.171 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.096 4.096 25 H 0.133 0.867 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.018 16.294 21.633 27.102 hybrid contribution 0.099 -1.358 -0.885 1.624 sum -0.919 14.936 20.747 25.581 Atomic orbital electron populations 1.21826 0.93168 1.01260 1.03167 1.21602 0.96282 0.96090 0.92635 1.21925 1.01182 0.92653 1.03446 1.22527 1.01680 0.79680 0.98487 1.48169 1.71790 1.07312 1.06551 1.20746 0.75036 0.83088 0.89527 1.90648 1.51543 1.25762 1.78267 1.21635 1.05013 1.00067 0.89576 1.21155 1.00101 0.94986 0.95614 1.18999 0.95508 0.95678 0.90724 1.21671 1.50314 0.94465 0.92254 0.93155 1.25904 0.94659 1.00611 0.98195 1.70063 1.51230 1.29435 1.06115 0.85491 0.78616 0.79405 0.77814 1.19640 1.20138 1.19348 1.21746 0.97151 0.98572 0.79936 0.92561 1.22202 0.95763 0.98596 1.00495 1.21895 0.97951 0.93905 1.01716 1.22338 0.92261 0.97488 1.03802 1.22757 0.98305 0.90559 0.98005 0.86707 0.90617 0.91636 0.94377 0.91353 0.91624 0.90456 0.90580 0.90278 0.88005 0.87907 0.94159 0.94252 0.98086 0.98060 0.92597 0.90682 0.94322 0.93115 0.90550 0.89415 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.48 71.98 0.61 -1.17 16 2 C -0.07 -0.87 0.76 -51.16 -0.04 -0.90 16 3 C -0.14 -1.16 7.59 71.98 0.55 -0.62 16 4 C 0.10 1.88 5.45 86.73 0.47 2.35 16 5 N -0.61 -16.16 3.07 -792.39 -2.44 -18.60 16 6 C 0.53 18.75 7.45 87.66 0.65 19.40 16 7 O -0.58 -25.64 15.35 -3.03 -0.05 -25.68 16 8 C -0.12 -4.42 4.74 29.85 0.14 -4.28 16 9 C -0.08 -3.74 4.44 30.59 0.14 -3.61 16 10 C 0.03 1.53 4.97 29.85 0.15 1.68 16 11 C -0.55 -33.08 9.11 25.60 0.23 -32.85 16 12 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 13 C 0.00 0.26 5.46 84.66 0.46 0.72 16 14 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 15 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 C 0.13 2.99 3.38 45.62 0.15 3.15 16 20 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 21 C -0.13 -3.13 6.31 30.86 0.19 -2.93 16 22 C -0.12 -2.01 6.77 30.90 0.21 -1.80 16 23 C -0.12 -1.49 5.55 31.01 0.17 -1.31 16 24 C -0.08 -1.10 3.35 -9.45 -0.03 -1.13 16 25 H 0.11 1.27 8.05 -2.39 -0.02 1.25 16 26 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.58 5.82 -2.39 -0.01 0.57 16 30 H 0.06 0.53 8.08 -2.39 -0.02 0.51 16 31 H 0.08 0.48 8.05 -2.39 -0.02 0.46 16 32 H 0.08 1.34 7.65 -2.39 -0.02 1.32 16 33 H 0.08 1.49 7.43 -2.39 -0.02 1.48 16 34 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.10 3.32 7.89 -2.38 -0.02 3.30 16 36 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 37 H 0.04 1.91 8.10 -2.38 -0.02 1.89 16 38 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.21 6.92 -2.39 -0.02 1.19 16 43 H 0.05 0.97 8.14 -2.38 -0.02 0.96 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 0.97 4.91 -2.39 -0.01 0.96 16 46 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -73.16 353.02 4.81 -68.34 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.92 Total: 8.08 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 4.06 Total: -23.30 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -2.15 Total: -75.30 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.16 4.81 -68.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594365510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.161 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds