Wall clock time and date at job start Tue Mar 31 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52435 * 1 3 3 C 1.53941 * 108.98872 * 2 1 4 4 C 1.54175 * 111.21452 * 240.27145 * 2 1 3 5 5 N 1.47944 * 106.17537 * 249.20365 * 4 2 1 6 6 C 1.34475 * 126.10154 * 147.31688 * 5 4 2 7 7 O 1.21278 * 120.00337 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.99758 * 359.97438 * 6 5 4 9 9 C 1.53000 * 109.47214 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47237 * 179.97438 * 9 8 6 11 11 C 1.50695 * 109.47225 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99961 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00292 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99766 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00213 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47299 * 60.00332 * 15 13 11 17 17 H 1.48500 * 109.47198 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47326 * 299.99849 * 15 13 11 19 19 C 1.46491 * 105.00027 * 326.81028 * 5 4 2 20 20 H 1.08539 * 111.55991 * 281.53970 * 19 5 4 21 21 C 1.52722 * 113.79614 * 154.10362 * 19 5 4 22 22 C 1.53807 * 107.01445 * 269.37740 * 21 19 5 23 23 C 1.54357 * 106.35549 * 359.53509 * 22 21 19 24 24 C 1.53747 * 113.22960 * 121.74569 * 2 1 3 25 25 H 1.08676 * 113.30703 * 255.02815 * 24 2 1 26 26 H 1.09000 * 109.46938 * 298.25461 * 1 2 3 27 27 H 1.09002 * 109.46632 * 58.25481 * 1 2 3 28 28 H 1.08995 * 109.47004 * 178.25411 * 1 2 3 29 29 H 1.09004 * 109.46858 * 184.16086 * 3 2 1 30 30 H 1.08994 * 109.47081 * 304.16206 * 3 2 1 31 31 H 1.08997 * 109.47031 * 64.16462 * 3 2 1 32 32 H 1.08744 * 109.99808 * 7.96428 * 4 2 1 33 33 H 1.08766 * 110.13749 * 130.13191 * 4 2 1 34 34 H 1.09002 * 109.47063 * 299.99827 * 8 6 5 35 35 H 1.09002 * 109.47277 * 59.99461 * 8 6 5 36 36 H 1.09002 * 109.46880 * 299.99836 * 9 8 6 37 37 H 1.09006 * 109.47046 * 59.99638 * 9 8 6 38 38 H 1.09002 * 109.47071 * 299.99742 * 10 9 8 39 39 H 1.09002 * 109.47247 * 59.99362 * 10 9 8 40 40 H 0.96994 * 119.99789 * 180.02562 * 14 13 11 41 41 H 1.08431 * 112.22901 * 30.58723 * 21 19 5 42 42 H 1.09760 * 109.49499 * 151.46416 * 21 19 5 43 43 H 1.08775 * 109.98228 * 117.90488 * 22 21 19 44 44 H 1.08604 * 110.29476 * 240.37462 * 22 21 19 45 45 H 1.08377 * 109.64131 * 218.71101 * 23 22 21 46 46 H 1.08663 * 107.08604 * 97.39687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5243 0.0000 0.0000 3 6 2.0252 1.4556 0.0000 4 6 2.0822 -0.7127 -1.2481 5 7 2.7017 -1.9662 -0.7645 6 6 2.7556 -3.1323 -1.4321 7 8 3.2939 -4.0952 -0.9283 8 6 2.1471 -3.2425 -2.8065 9 6 2.3437 -4.6634 -3.3388 10 6 1.7254 -4.7755 -4.7337 11 6 1.9195 -6.1748 -5.2583 12 1 2.4329 -6.9105 -4.6570 13 6 1.4417 -6.5159 -6.5059 14 7 0.8169 -5.6198 -7.2383 15 14 1.6830 -8.2502 -7.1563 16 1 1.0236 -9.2177 -6.2429 17 1 1.0828 -8.3590 -8.5103 18 1 3.1348 -8.5525 -7.2334 19 6 3.2331 -1.6397 0.5610 20 1 4.1695 -1.0952 0.4922 21 6 3.3489 -2.8445 1.4923 22 6 2.0231 -2.9449 2.2654 23 6 1.1448 -1.7738 1.7758 24 6 2.1307 -0.7434 1.2015 25 1 2.5373 -0.0778 1.9583 26 1 -0.3633 0.4865 0.9052 27 1 -0.3633 0.5407 -0.8740 28 1 -0.3633 -1.0271 -0.0313 29 1 3.1127 1.4657 -0.0746 30 1 1.5978 1.9869 -0.8503 31 1 1.7200 1.9449 0.9249 32 1 1.2734 -0.9433 -1.9374 33 1 2.8313 -0.0897 -1.7316 34 1 1.0815 -3.0199 -2.7510 35 1 2.6321 -2.5327 -3.4766 36 1 3.4092 -4.8865 -3.3942 37 1 1.8583 -5.3729 -2.6685 38 1 0.6599 -4.5526 -4.6779 39 1 2.2103 -4.0659 -5.4042 40 1 0.4804 -5.8599 -8.1158 41 1 3.5407 -3.7644 0.9512 42 1 4.1658 -2.6783 2.2064 43 1 1.5298 -3.8869 2.0367 44 1 2.2015 -2.8527 3.3328 45 1 0.5949 -1.3567 2.6114 46 1 0.4781 -2.1710 1.0152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594365512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:51 Heat of formation + Delta-G solvation = -60.945724 kcal Electronic energy + Delta-G solvation = -22775.675472 eV Core-core repulsion = 19663.935941 eV Total energy + Delta-G solvation = -3111.739531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09529 -38.35480 -35.37613 -34.11752 -33.75343 -31.96201 -29.04592 -28.22887 -27.58901 -27.01173 -26.12251 -23.77041 -21.58466 -20.77972 -19.92892 -18.97570 -18.73805 -16.69695 -16.47451 -16.04273 -15.32025 -15.08827 -14.89854 -14.42037 -14.23070 -14.08233 -13.54713 -13.31435 -13.09609 -12.81700 -12.30932 -12.19981 -12.05475 -11.90493 -11.79638 -11.75479 -11.33942 -11.27173 -11.13801 -10.94564 -10.76687 -10.66677 -10.60385 -10.54442 -10.49534 -10.35385 -9.63611 -9.41144 -9.15536 -8.91814 -8.56600 -8.29291 -5.95287 -3.96589 2.96099 3.10661 3.38278 3.41500 3.45530 4.12088 4.22948 4.38237 4.51311 4.79649 4.82744 4.90712 5.03641 5.13891 5.27275 5.29853 5.35852 5.39820 5.40669 5.47938 5.50855 5.61287 5.65109 5.68585 5.71842 5.74467 5.76943 5.81820 5.88425 5.92253 5.93338 6.05779 6.11839 6.23147 6.28579 6.38585 6.72206 6.76375 6.97545 7.19259 7.70571 7.75260 7.86690 8.05605 8.49466 8.51457 9.10246 9.67134 11.16228 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026253 B = 0.003606 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.305410 B = 7764.016975 C = 8323.709273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 C -0.141 4.141 4 C 0.104 3.896 5 N -0.616 5.616 6 C 0.535 3.465 7 O -0.534 6.534 8 C -0.134 4.134 9 C -0.094 4.094 10 C 0.021 3.979 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.139 3.861 20 H 0.072 0.928 21 C -0.147 4.147 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.092 4.092 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 16.295 18.329 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.019 4.019 5 N -0.351 5.351 6 C 0.326 3.674 7 O -0.411 6.411 8 C -0.174 4.174 9 C -0.132 4.132 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.035 3.965 20 H 0.090 0.910 21 C -0.184 4.184 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.111 4.111 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.922 15.664 18.369 24.159 hybrid contribution 0.103 -0.724 -0.439 0.853 sum 1.024 14.940 17.930 23.361 Atomic orbital electron populations 1.21776 0.93352 1.02410 1.01938 1.21359 0.96190 0.95299 0.94494 1.22155 1.01008 0.94694 1.02012 1.22456 0.97755 0.85356 0.96354 1.48405 1.58099 1.10737 1.17895 1.20833 0.78830 0.80182 0.87517 1.90562 1.44832 1.36657 1.69062 1.21842 1.01325 1.02598 0.91610 1.21447 1.01363 0.91318 0.99090 1.19119 0.95761 0.96978 0.89730 1.21238 1.36328 0.96799 1.01257 0.92643 1.25015 0.95296 0.97207 0.96950 1.69956 1.38672 1.33808 1.11340 0.86655 0.78455 0.85007 0.77882 1.20233 1.21337 1.20237 1.21916 0.96087 0.95481 0.83004 0.90999 1.22305 0.97366 1.00812 0.97921 1.22129 0.95988 0.98881 0.99136 1.22096 0.97928 0.95037 1.00219 1.22789 0.95833 0.96258 0.96234 0.88805 0.92327 0.92216 0.91931 0.92510 0.92267 0.92415 0.89997 0.91117 0.89610 0.89575 0.92714 0.92733 0.96658 0.96651 0.93040 0.87244 0.92089 0.91951 0.92255 0.91774 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.54 36.87 0.28 -0.79 16 2 C -0.07 -0.59 0.94 -153.30 -0.14 -0.74 16 3 C -0.14 -0.92 8.06 37.65 0.30 -0.62 16 4 C 0.10 1.06 6.03 -2.63 -0.02 1.04 16 5 N -0.62 -8.15 3.14 -163.16 -0.51 -8.66 16 6 C 0.54 9.09 7.78 -11.12 -0.09 9.00 16 7 O -0.53 -10.81 13.65 5.56 0.08 -10.73 16 8 C -0.13 -2.33 4.62 -27.88 -0.13 -2.46 16 9 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 10 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 11 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 15 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.14 1.60 3.76 -66.56 -0.25 1.35 16 20 H 0.07 0.78 8.10 -52.19 -0.42 0.36 16 21 C -0.15 -1.81 6.17 -26.45 -0.16 -1.97 16 22 C -0.12 -1.35 6.85 -25.60 -0.18 -1.52 16 23 C -0.12 -1.11 5.21 -25.63 -0.13 -1.24 16 24 C -0.09 -0.82 3.32 -88.32 -0.29 -1.11 16 25 H 0.09 0.71 7.86 -52.11 -0.41 0.30 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.56 6.29 -51.93 -0.33 0.23 16 29 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.83 6.79 -52.07 -0.35 0.48 16 33 H 0.07 0.66 7.59 -52.06 -0.40 0.26 16 34 H 0.09 1.38 7.81 -51.93 -0.41 0.97 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.11 1.75 5.16 -52.25 -0.27 1.48 16 42 H 0.06 0.65 8.21 -51.50 -0.42 0.23 16 43 H 0.06 0.77 8.12 -52.06 -0.42 0.35 16 44 H 0.06 0.55 8.11 -52.15 -0.42 0.13 16 45 H 0.06 0.53 8.09 -52.28 -0.42 0.10 16 46 H 0.07 0.80 6.16 -52.12 -0.32 0.47 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -32.30 350.81 -9.27 -41.57 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.36 Total: -3.31 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -1.48 Total: -14.79 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.22 Total: -35.22 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.30 -9.27 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594365512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.374 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds