Wall clock time and date at job start Tue Mar 31 2020 01:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99773 * 2 1 4 4 H 1.48498 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47113 * 300.00134 * 3 2 1 6 6 H 1.48505 * 109.47024 * 60.00004 * 3 2 1 7 7 C 1.37872 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47197 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99766 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99897 * 0.02562 * 13 12 11 15 15 C 1.50716 * 119.99759 * 180.02562 * 13 12 11 16 16 H 1.08932 * 115.11215 * 326.93304 * 15 13 12 17 17 C 1.52848 * 117.50568 * 112.27590 * 15 13 12 18 18 H 1.11348 * 115.52083 * 359.95376 * 17 15 13 19 19 C 1.52066 * 117.16905 * 222.03640 * 17 15 13 20 20 C 1.52599 * 108.98325 * 209.12964 * 19 17 15 21 21 C 1.52865 * 109.17740 * 87.98411 * 20 19 17 22 22 C 1.52384 * 116.10267 * 27.43174 * 21 20 19 23 23 C 1.53119 * 114.50891 * 290.94033 * 22 21 20 24 24 C 1.53907 * 109.90311 * 328.49879 * 23 22 21 25 25 C 1.51026 * 60.41049 * 107.35328 * 17 15 13 26 26 H 1.11542 * 117.40799 * 255.13242 * 25 17 15 27 27 H 0.96998 * 120.00047 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47506 * 59.99944 * 9 7 2 29 29 H 1.09000 * 109.47126 * 299.99818 * 9 7 2 30 30 H 1.08995 * 109.47523 * 59.99880 * 10 9 7 31 31 H 1.09000 * 109.47374 * 299.99571 * 10 9 7 32 32 H 1.09003 * 109.46721 * 59.99913 * 11 10 9 33 33 H 1.08992 * 109.47333 * 300.00095 * 11 10 9 34 34 H 0.96998 * 120.00528 * 0.02562 * 12 11 10 35 35 H 1.07516 * 114.75818 * 335.45422 * 19 17 15 36 36 H 1.11413 * 108.10956 * 92.86843 * 19 17 15 37 37 H 1.08614 * 109.82096 * 207.91041 * 20 19 17 38 38 H 1.08887 * 109.43497 * 328.62401 * 20 19 17 39 39 H 1.10143 * 106.52764 * 147.32127 * 21 20 19 40 40 H 1.08483 * 108.97077 * 261.81170 * 21 20 19 41 41 H 1.09990 * 108.83582 * 53.11672 * 22 21 20 42 42 H 1.10064 * 108.59080 * 168.86412 * 22 21 20 43 43 H 1.08425 * 113.04089 * 94.51238 * 23 22 21 44 44 H 1.11362 * 107.98038 * 210.76377 * 23 22 21 45 45 H 1.09275 * 111.09245 * 343.74816 * 24 23 22 46 46 H 1.10885 * 108.30107 * 228.91764 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0025 12 7 2.4325 -6.1005 0.0031 13 6 1.9833 -7.3713 0.0042 14 8 0.7909 -7.5929 0.0043 15 6 2.9627 -8.5168 0.0055 16 1 3.8915 -8.3314 -0.5328 17 6 3.0308 -9.3861 1.2608 18 1 2.3397 -9.0949 2.0840 19 6 4.4117 -9.7993 1.7453 20 6 4.3048 -11.1419 2.4627 21 6 4.4524 -12.2700 1.4418 22 6 5.2717 -11.9460 0.1985 23 6 4.6127 -10.9438 -0.7532 24 6 3.0819 -11.0904 -0.6906 25 6 2.3940 -9.9359 0.0066 26 1 1.2807 -10.0010 -0.0179 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6039 0.8922 31 1 2.8727 -3.6047 -0.8877 32 1 0.8541 -5.0454 -0.8878 33 1 0.8534 -5.0442 0.8921 34 1 3.3861 -5.9233 0.0034 35 1 5.1709 -9.8113 0.9841 36 1 4.7541 -9.0501 2.4955 37 1 5.0908 -11.2248 3.2078 38 1 3.3302 -11.2200 2.9420 39 1 4.9511 -13.1018 1.9638 40 1 3.4660 -12.6273 1.1661 41 1 6.2500 -11.5520 0.5106 42 1 5.4678 -12.8821 -0.3463 43 1 4.9313 -9.9219 -0.5804 44 1 4.9419 -11.1858 -1.7892 45 1 2.7962 -12.0359 -0.2231 46 1 2.6955 -11.1546 -1.7279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597150910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:00 Heat of formation + Delta-G solvation = -45.484541 kcal Electronic energy + Delta-G solvation = -21583.663040 eV Core-core repulsion = 18472.593956 eV Total energy + Delta-G solvation = -3111.069083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52499 -38.67413 -35.59542 -34.93085 -33.28416 -32.85069 -31.20107 -28.40970 -27.40502 -26.76174 -24.23975 -22.67801 -21.25315 -20.89370 -20.67055 -19.88355 -18.65642 -17.12678 -16.42346 -15.87373 -15.57852 -15.35647 -15.09525 -14.68726 -14.45768 -14.14315 -13.84265 -13.57714 -13.48516 -12.77070 -12.54188 -12.28453 -12.19639 -11.82867 -11.73838 -11.69651 -11.52294 -11.33315 -10.97388 -10.92015 -10.73026 -10.58057 -10.44113 -10.39223 -10.05703 -9.86862 -9.85181 -9.67643 -9.30865 -9.09222 -8.73381 -8.37768 -6.02067 -4.05142 2.64200 3.29739 3.32364 3.37371 3.41089 3.76126 4.37000 4.42548 4.44958 4.49445 4.60920 4.66612 4.76131 4.78151 4.94075 5.03811 5.10283 5.15411 5.33768 5.41617 5.43396 5.47325 5.61202 5.65168 5.69773 5.74343 5.77584 5.78980 5.86533 5.88544 5.91545 5.96817 6.09061 6.17374 6.17885 6.25713 6.52330 6.60748 6.85491 7.01226 7.63733 7.76184 7.77343 7.96881 8.37545 8.46605 9.01811 9.59129 11.09304 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036876 B = 0.002533 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.118202 B =11051.774379 C =11297.321968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.722 5.722 13 C 0.537 3.463 14 O -0.548 6.548 15 C -0.193 4.193 16 H 0.120 0.880 17 C -0.111 4.111 18 H 0.101 0.899 19 C -0.100 4.100 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.092 4.092 25 C -0.100 4.100 26 H 0.116 0.884 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.515 -25.468 1.583 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.006 4.006 12 N -0.372 5.372 13 C 0.323 3.677 14 O -0.426 6.426 15 C -0.214 4.214 16 H 0.138 0.862 17 C -0.130 4.130 18 H 0.120 0.880 19 C -0.137 4.137 20 C -0.148 4.148 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.129 4.129 25 C -0.119 4.119 26 H 0.134 0.866 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.232 0.768 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.494 -25.491 1.583 27.612 hybrid contribution 0.877 1.244 -0.061 1.523 sum 11.371 -24.247 1.522 26.824 Atomic orbital electron populations 1.69975 1.06066 1.26579 1.50673 1.25036 0.94862 0.99330 0.95297 0.86525 0.80042 0.83751 0.77606 1.19759 1.20990 1.20993 1.21241 0.93024 0.90931 1.50771 0.92596 1.19036 0.93867 0.90892 0.97649 1.21882 0.99742 0.93346 1.00851 1.21642 0.91906 0.85165 1.01908 1.46124 1.10764 1.05745 1.74587 1.19668 0.88624 0.83485 0.75956 1.90678 1.16840 1.84827 1.50264 1.22347 1.01309 0.91463 1.06264 0.86204 1.22204 0.98622 1.00947 0.91224 0.88046 1.21248 0.94461 0.96975 1.01031 1.21322 1.01862 0.94311 0.97321 1.21470 1.00734 0.98152 0.95418 1.21518 0.98706 0.98945 0.95538 1.22053 0.94945 0.99855 0.98969 1.21216 0.94145 0.97036 1.00461 1.21948 1.00363 0.91059 0.98530 0.86583 0.92976 0.96277 0.96287 0.92745 0.92742 0.91833 0.91865 0.76803 0.89537 0.92597 0.92182 0.91505 0.93368 0.91714 0.92483 0.92437 0.90727 0.92901 0.90245 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 12 N -0.72 -10.69 5.56 -60.29 -0.33 -11.03 16 13 C 0.54 8.18 7.61 -10.98 -0.08 8.10 16 14 O -0.55 -10.56 16.16 5.56 0.09 -10.47 16 15 C -0.19 -2.12 5.35 -91.90 -0.49 -2.61 16 16 H 0.12 1.10 6.79 -51.97 -0.35 0.74 16 17 C -0.11 -1.07 4.73 -92.17 -0.44 -1.51 16 18 H 0.10 1.12 8.33 -50.57 -0.42 0.70 16 19 C -0.10 -0.76 4.71 -27.41 -0.13 -0.89 16 20 C -0.11 -0.75 6.07 -27.01 -0.16 -0.92 16 21 C -0.12 -0.76 5.06 -27.12 -0.14 -0.89 16 22 C -0.11 -0.66 5.00 -26.98 -0.13 -0.80 16 23 C -0.12 -0.82 4.95 -26.20 -0.13 -0.95 16 24 C -0.09 -0.72 5.13 -27.07 -0.14 -0.86 16 25 C -0.10 -1.02 5.58 -92.48 -0.52 -1.53 16 26 H 0.12 1.40 7.71 -50.46 -0.39 1.01 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.40 4.77 8.47 -40.82 -0.35 4.43 16 35 H 0.09 0.61 4.05 -52.75 -0.21 0.39 16 36 H 0.06 0.43 8.34 -50.53 -0.42 0.01 16 37 H 0.06 0.37 8.11 -52.15 -0.42 -0.05 16 38 H 0.07 0.48 7.82 -51.99 -0.41 0.08 16 39 H 0.05 0.28 8.22 -51.28 -0.42 -0.14 16 40 H 0.06 0.42 5.93 -52.22 -0.31 0.11 16 41 H 0.06 0.33 7.92 -51.37 -0.41 -0.08 16 42 H 0.06 0.32 8.23 -51.32 -0.42 -0.10 16 43 H 0.07 0.52 4.20 -52.25 -0.22 0.30 16 44 H 0.05 0.34 8.34 -50.56 -0.42 -0.08 16 45 H 0.08 0.57 5.66 -51.77 -0.29 0.27 16 46 H 0.06 0.45 8.30 -50.85 -0.42 0.03 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -31.93 351.84 -10.27 -42.20 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.97 Total: 0.00 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -3.07 Total: -16.30 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.40 Total: -37.28 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.93 -10.27 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.285 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds