Wall clock time and date at job start Tue Mar 31 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99773 * 2 1 4 4 H 1.48498 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47113 * 300.00134 * 3 2 1 6 6 H 1.48505 * 109.47024 * 60.00004 * 3 2 1 7 7 C 1.37872 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47197 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99766 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99897 * 0.02562 * 13 12 11 15 15 C 1.50716 * 119.99759 * 180.02562 * 13 12 11 16 16 H 1.08932 * 115.11215 * 326.93304 * 15 13 12 17 17 C 1.52848 * 117.50568 * 112.27590 * 15 13 12 18 18 H 1.11348 * 115.52083 * 359.95376 * 17 15 13 19 19 C 1.52066 * 117.16905 * 222.03640 * 17 15 13 20 20 C 1.52599 * 108.98325 * 209.12964 * 19 17 15 21 21 C 1.52865 * 109.17740 * 87.98411 * 20 19 17 22 22 C 1.52384 * 116.10267 * 27.43174 * 21 20 19 23 23 C 1.53119 * 114.50891 * 290.94033 * 22 21 20 24 24 C 1.53907 * 109.90311 * 328.49879 * 23 22 21 25 25 C 1.51026 * 60.41049 * 107.35328 * 17 15 13 26 26 H 1.11542 * 117.40799 * 255.13242 * 25 17 15 27 27 H 0.96998 * 120.00047 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47506 * 59.99944 * 9 7 2 29 29 H 1.09000 * 109.47126 * 299.99818 * 9 7 2 30 30 H 1.08995 * 109.47523 * 59.99880 * 10 9 7 31 31 H 1.09000 * 109.47374 * 299.99571 * 10 9 7 32 32 H 1.09003 * 109.46721 * 59.99913 * 11 10 9 33 33 H 1.08992 * 109.47333 * 300.00095 * 11 10 9 34 34 H 0.96998 * 120.00528 * 0.02562 * 12 11 10 35 35 H 1.07516 * 114.75818 * 335.45422 * 19 17 15 36 36 H 1.11413 * 108.10956 * 92.86843 * 19 17 15 37 37 H 1.08614 * 109.82096 * 207.91041 * 20 19 17 38 38 H 1.08887 * 109.43497 * 328.62401 * 20 19 17 39 39 H 1.10143 * 106.52764 * 147.32127 * 21 20 19 40 40 H 1.08483 * 108.97077 * 261.81170 * 21 20 19 41 41 H 1.09990 * 108.83582 * 53.11672 * 22 21 20 42 42 H 1.10064 * 108.59080 * 168.86412 * 22 21 20 43 43 H 1.08425 * 113.04089 * 94.51238 * 23 22 21 44 44 H 1.11362 * 107.98038 * 210.76377 * 23 22 21 45 45 H 1.09275 * 111.09245 * 343.74816 * 24 23 22 46 46 H 1.10885 * 108.30107 * 228.91764 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0025 12 7 2.4325 -6.1005 0.0031 13 6 1.9833 -7.3713 0.0042 14 8 0.7909 -7.5929 0.0043 15 6 2.9627 -8.5168 0.0055 16 1 3.8915 -8.3314 -0.5328 17 6 3.0308 -9.3861 1.2608 18 1 2.3397 -9.0949 2.0840 19 6 4.4117 -9.7993 1.7453 20 6 4.3048 -11.1419 2.4627 21 6 4.4524 -12.2700 1.4418 22 6 5.2717 -11.9460 0.1985 23 6 4.6127 -10.9438 -0.7532 24 6 3.0819 -11.0904 -0.6906 25 6 2.3940 -9.9359 0.0066 26 1 1.2807 -10.0010 -0.0179 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6039 0.8922 31 1 2.8727 -3.6047 -0.8877 32 1 0.8541 -5.0454 -0.8878 33 1 0.8534 -5.0442 0.8921 34 1 3.3861 -5.9233 0.0034 35 1 5.1709 -9.8113 0.9841 36 1 4.7541 -9.0501 2.4955 37 1 5.0908 -11.2248 3.2078 38 1 3.3302 -11.2200 2.9420 39 1 4.9511 -13.1018 1.9638 40 1 3.4660 -12.6273 1.1661 41 1 6.2500 -11.5520 0.5106 42 1 5.4678 -12.8821 -0.3463 43 1 4.9313 -9.9219 -0.5804 44 1 4.9419 -11.1858 -1.7892 45 1 2.7962 -12.0359 -0.2231 46 1 2.6955 -11.1546 -1.7279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597150910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:59 Heat of formation + Delta-G solvation = -63.620230 kcal Electronic energy + Delta-G solvation = -21584.449462 eV Core-core repulsion = 18472.593956 eV Total energy + Delta-G solvation = -3111.855506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48303 -39.71020 -37.03128 -35.80495 -35.19911 -33.43188 -33.02873 -29.38445 -28.39322 -27.90211 -25.66717 -24.02536 -22.34288 -22.10309 -21.51694 -20.93994 -19.51355 -18.53959 -18.14029 -16.89653 -16.72161 -16.44211 -16.42663 -15.91050 -15.62891 -15.20512 -15.02765 -14.35440 -14.27935 -14.15072 -13.77772 -13.72361 -13.53064 -13.14915 -12.78890 -12.76946 -12.57343 -12.36425 -12.28748 -12.13578 -11.95733 -11.70695 -11.63309 -11.52615 -11.25967 -11.09302 -11.00041 -10.80956 -10.68716 -10.57721 -10.35920 -10.10948 -8.20878 -6.32639 1.41156 1.41387 1.47139 1.54773 2.13217 2.41637 2.85351 3.12927 3.58618 3.69778 3.82172 3.93398 4.03728 4.08953 4.15119 4.17201 4.18168 4.27298 4.33161 4.43704 4.52005 4.53443 4.75318 4.80501 4.91009 4.94083 4.97780 5.04911 5.07553 5.11409 5.14578 5.20347 5.23396 5.28376 5.36067 5.41411 5.42770 5.47994 5.51179 5.67116 5.68060 5.71332 5.82356 6.20467 6.57570 6.85060 7.24886 7.37206 8.91593 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036876 B = 0.002533 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.118202 B =11051.774379 C =11297.321968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.129 3.871 12 N -0.711 5.711 13 C 0.532 3.468 14 O -0.595 6.595 15 C -0.194 4.194 16 H 0.148 0.852 17 C -0.097 4.097 18 H 0.082 0.918 19 C -0.096 4.096 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.088 4.088 25 C -0.099 4.099 26 H 0.089 0.911 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.009 1.009 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.416 0.584 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.753 -26.157 1.540 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.362 5.362 13 C 0.320 3.680 14 O -0.476 6.476 15 C -0.214 4.214 16 H 0.165 0.835 17 C -0.116 4.116 18 H 0.101 0.899 19 C -0.133 4.133 20 C -0.148 4.148 21 C -0.158 4.158 22 C -0.146 4.146 23 C -0.157 4.157 24 C -0.125 4.125 25 C -0.118 4.118 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.009 0.991 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.253 0.747 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.781 -26.195 1.542 29.639 hybrid contribution -0.210 1.420 -0.030 1.436 sum 13.571 -24.776 1.511 28.290 Atomic orbital electron populations 1.70121 1.07998 1.27772 1.51751 1.26051 0.95766 1.03662 0.94762 0.85340 0.79202 0.78497 0.77641 1.18119 1.20543 1.20554 1.21702 0.93765 0.91936 1.50366 0.91466 1.18952 0.94455 0.93076 0.94997 1.21588 0.98400 0.91658 1.02169 1.21230 0.92044 0.85766 1.00435 1.45912 1.11150 1.04896 1.74230 1.20420 0.88744 0.84265 0.74527 1.90659 1.19184 1.85483 1.52284 1.22341 1.01107 0.90024 1.07973 0.83467 1.22243 0.99531 0.99667 0.90169 0.89930 1.21263 0.93053 0.97476 1.01490 1.21320 1.01804 0.94023 0.97651 1.21470 1.00690 0.98105 0.95563 1.21502 0.98759 0.99124 0.95175 1.22049 0.93683 1.00194 0.99784 1.21220 0.95077 0.96124 1.00049 1.21942 0.99223 0.91339 0.99270 0.89281 0.92792 0.99034 0.99057 0.91321 0.91271 0.93438 0.93510 0.74713 0.88223 0.92310 0.91154 0.92369 0.92615 0.92228 0.91715 0.91712 0.90616 0.92120 0.89476 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.29 21.44 0.28 -57.39 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.10 -3.94 5.27 30.60 0.16 -3.78 16 11 C 0.13 4.76 5.67 86.38 0.49 5.25 16 12 N -0.71 -20.53 5.56 -463.03 -2.57 -23.11 16 13 C 0.53 16.23 7.61 87.66 0.67 16.89 16 14 O -0.59 -23.79 16.16 -3.03 -0.05 -23.84 16 15 C -0.19 -4.02 5.35 -11.62 -0.06 -4.09 16 16 H 0.15 2.26 6.79 -2.42 -0.02 2.24 16 17 C -0.10 -1.78 4.73 -11.80 -0.06 -1.84 16 18 H 0.08 1.84 8.33 -1.11 -0.01 1.83 16 19 C -0.10 -1.24 4.71 30.15 0.14 -1.09 16 20 C -0.11 -1.27 6.07 30.42 0.18 -1.09 16 21 C -0.12 -1.23 5.06 30.35 0.15 -1.07 16 22 C -0.11 -0.97 5.00 30.43 0.15 -0.82 16 23 C -0.12 -1.29 4.95 30.94 0.15 -1.14 16 24 C -0.09 -1.24 5.13 30.38 0.16 -1.08 16 25 C -0.10 -1.96 5.58 -12.00 -0.07 -2.02 16 26 H 0.09 2.26 7.71 -1.00 -0.01 2.25 16 27 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.42 9.07 8.47 -92.71 -0.79 8.28 16 35 H 0.10 1.06 4.05 -3.16 -0.01 1.05 16 36 H 0.06 0.75 8.34 -1.08 -0.01 0.74 16 37 H 0.07 0.69 8.11 -2.59 -0.02 0.67 16 38 H 0.06 0.77 7.82 -2.45 -0.02 0.75 16 39 H 0.06 0.50 8.22 -1.77 -0.01 0.48 16 40 H 0.06 0.67 5.93 -2.66 -0.02 0.65 16 41 H 0.06 0.52 7.92 -1.86 -0.01 0.50 16 42 H 0.06 0.52 8.23 -1.82 -0.01 0.50 16 43 H 0.08 0.80 4.20 -2.69 -0.01 0.79 16 44 H 0.06 0.59 8.34 -1.11 -0.01 0.58 16 45 H 0.09 1.11 5.66 -2.24 -0.01 1.10 16 46 H 0.05 0.81 8.30 -1.37 -0.01 0.80 16 Total: -1.00 -70.47 351.84 2.83 -67.63 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.23 Total: 15.14 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 2.92 Total: -24.45 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.29 Total: -80.50 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -70.47 2.83 -67.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.014 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds