Wall clock time and date at job start Tue Mar 31 2020 02:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 110.01560 * 2 1 4 4 C 1.53876 * 110.03566 * 121.39394 * 2 1 3 5 5 C 1.54270 * 106.59912 * 119.28173 * 4 2 1 6 6 C 1.54890 * 104.19559 * 336.39323 * 5 4 2 7 7 H 1.08999 * 110.75424 * 279.44401 * 6 5 4 8 8 C 1.50701 * 110.75710 * 156.25383 * 6 5 4 9 9 O 1.21274 * 120.00355 * 274.53023 * 8 6 5 10 10 N 1.34778 * 119.99811 * 94.52532 * 8 6 5 11 11 C 1.46931 * 120.63137 * 354.52394 * 10 8 6 12 12 C 1.53192 * 108.77869 * 126.38831 * 11 10 8 13 13 C 1.53037 * 109.31065 * 54.63361 * 12 11 10 14 14 C 1.53044 * 109.53935 * 298.63278 * 13 12 11 15 15 H 1.09003 * 109.50062 * 301.41953 * 14 13 12 16 16 C 1.50700 * 109.50030 * 181.31863 * 14 13 12 17 17 H 1.08002 * 120.00392 * 240.00558 * 16 14 13 18 18 C 1.37879 * 119.99753 * 60.00011 * 16 14 13 19 19 N 1.31511 * 120.00098 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99782 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47209 * 90.00055 * 20 18 16 22 22 H 1.48504 * 109.47341 * 210.00075 * 20 18 16 23 23 H 1.48503 * 109.47315 * 330.00285 * 20 18 16 24 24 C 1.46927 * 120.63176 * 174.51534 * 10 8 6 25 25 C 1.54270 * 110.03291 * 238.56092 * 2 1 3 26 26 H 1.09006 * 109.46758 * 300.05582 * 1 2 3 27 27 H 1.09002 * 109.47559 * 60.05840 * 1 2 3 28 28 H 1.09000 * 109.47409 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47405 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47371 * 299.94021 * 3 2 1 31 31 H 1.09000 * 109.47076 * 59.94515 * 3 2 1 32 32 H 1.09000 * 110.02982 * 359.97438 * 4 2 1 33 33 H 1.09000 * 110.03311 * 238.56668 * 4 2 1 34 34 H 1.08997 * 110.48540 * 217.71071 * 5 4 2 35 35 H 1.09003 * 110.59250 * 95.12287 * 5 4 2 36 36 H 1.08999 * 109.58287 * 6.59968 * 11 10 8 37 37 H 1.08998 * 109.58321 * 246.17426 * 11 10 8 38 38 H 1.09001 * 109.49285 * 294.68163 * 12 11 10 39 39 H 1.08992 * 109.52435 * 174.60525 * 12 11 10 40 40 H 1.09002 * 109.45824 * 178.61724 * 13 12 11 41 41 H 1.08995 * 109.45155 * 58.65262 * 13 12 11 42 42 H 0.96998 * 120.00004 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58160 * 113.82240 * 24 10 8 44 44 H 1.08996 * 109.58206 * 353.40325 * 24 10 8 45 45 H 1.08995 * 110.48932 * 145.64439 * 25 2 1 46 46 H 1.09001 * 110.48178 * 22.99988 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0571 -0.7531 1.2340 5 6 2.8875 -1.9404 0.7042 6 6 2.3280 -2.1905 -0.7183 7 1 1.4048 -2.7682 -0.6742 8 6 3.3504 -2.8861 -1.5796 9 8 4.1865 -2.2375 -2.1720 10 7 3.3355 -4.2292 -1.6915 11 6 2.4075 -5.0371 -0.8885 12 6 1.6059 -5.9452 -1.8264 13 6 2.5718 -6.7650 -2.6848 14 6 3.4248 -5.8227 -3.5374 15 1 2.7758 -5.2135 -4.1665 16 6 4.3531 -6.6319 -4.4060 17 1 5.4222 -6.5088 -4.3151 18 6 3.8375 -7.5296 -5.3167 19 7 2.5357 -7.6792 -5.4277 20 14 4.9882 -8.5331 -6.3930 21 1 5.3258 -9.8051 -5.7051 22 1 4.3221 -8.8314 -7.6862 23 1 6.2315 -7.7606 -6.6432 24 6 4.2470 -4.9132 -2.6189 25 6 2.0584 -0.7560 -1.2366 26 1 -0.3633 0.5147 0.8896 27 1 -0.3634 0.5129 -0.8905 28 1 -0.3634 -1.0276 0.0005 29 1 3.1436 1.4273 0.0005 30 1 1.6961 1.9545 -0.8905 31 1 1.6944 1.9551 0.8895 32 1 1.2230 -1.1181 1.8331 33 1 2.6868 -0.0946 1.8324 34 1 2.7402 -2.8192 1.3321 35 1 3.9446 -1.6786 0.6578 36 1 1.7272 -4.3807 -0.3458 37 1 2.9709 -5.6471 -0.1826 38 1 0.9740 -5.3348 -2.4715 39 1 0.9823 -6.6176 -1.2373 40 1 2.0042 -7.4299 -3.3358 41 1 3.2199 -7.3563 -2.0380 42 1 2.1730 -8.3110 -6.0682 43 1 4.9605 -5.5131 -2.0540 44 1 4.7804 -4.1752 -3.2178 45 1 2.9810 -0.3007 -1.5966 46 1 1.3060 -0.7704 -2.0251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:05 Heat of formation + Delta-G solvation = -69.536018 kcal Electronic energy + Delta-G solvation = -22978.950637 eV Core-core repulsion = 19866.838604 eV Total energy + Delta-G solvation = -3112.112034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18675 -38.36783 -36.60244 -33.54812 -32.37064 -31.25001 -30.18944 -28.91758 -27.41874 -25.58193 -24.97229 -23.97412 -21.76661 -21.51173 -19.41707 -18.80103 -18.16589 -17.08728 -16.24956 -15.53230 -15.10894 -14.68393 -14.40324 -14.08217 -13.78521 -13.52466 -13.50058 -13.26507 -13.13573 -12.79666 -12.64942 -12.19561 -12.07106 -12.00170 -11.60761 -11.53458 -11.03755 -10.98591 -10.84883 -10.77191 -10.71192 -10.63240 -10.55632 -10.49902 -10.19727 -9.94589 -9.78995 -9.45720 -9.15799 -8.81028 -8.38312 -7.85998 -6.01966 -4.09043 3.07204 3.29586 3.36459 3.40306 3.59626 4.41962 4.45130 4.50047 4.63771 5.03353 5.15856 5.17765 5.21052 5.28117 5.33339 5.43481 5.50409 5.53688 5.58846 5.65271 5.68940 5.74943 5.81055 5.86463 5.89856 5.97764 6.00205 6.13139 6.16592 6.25303 6.31533 6.34087 6.41519 6.43027 6.50610 6.67714 6.82620 7.00289 7.18405 7.34281 7.69152 7.92523 8.06285 8.08075 8.38025 8.71434 8.94793 9.55852 11.03516 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.033504 B = 0.003866 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.522436 B = 7240.977922 C = 7448.476666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.113 4.113 5 C -0.108 4.108 6 C -0.116 4.116 7 H 0.095 0.905 8 C 0.516 3.484 9 O -0.553 6.553 10 N -0.603 5.603 11 C 0.108 3.892 12 C -0.136 4.136 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.117 3.883 25 C -0.099 4.099 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.260 0.740 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 11.364 13.903 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.195 4.195 4 C -0.150 4.150 5 C -0.146 4.146 6 C -0.137 4.137 7 H 0.113 0.887 8 C 0.304 3.696 9 O -0.432 6.432 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.174 4.174 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.004 4.004 25 C -0.136 4.136 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.986 11.595 13.480 18.467 hybrid contribution 0.437 -0.816 -0.612 1.110 sum -4.549 10.779 12.868 17.392 Atomic orbital electron populations 1.21923 0.94406 1.01781 1.01454 1.21183 0.95426 0.95394 0.95105 1.21901 1.01055 0.95190 1.01379 1.22268 0.99265 0.96565 0.96919 1.22271 1.00179 0.98339 0.93809 1.22311 0.98343 0.97372 0.95705 0.88708 1.20382 0.85279 0.82106 0.81813 1.90630 1.39396 1.64982 1.48144 1.48317 1.38173 1.05445 1.41508 1.21785 0.92055 0.94089 0.93608 1.22012 0.98713 0.98400 0.98265 1.21624 0.97347 0.98978 0.97058 1.18973 0.94168 0.92626 0.92134 0.95330 1.21087 0.92923 1.21878 1.19372 0.92490 1.24934 0.95052 0.96929 0.96887 1.69871 1.10736 1.36217 1.35972 0.86580 0.81015 0.80419 0.79919 1.20693 1.21239 1.19846 1.21982 0.91935 0.95536 0.90956 1.22412 1.02031 0.92706 0.96497 0.92868 0.92691 0.92503 0.92451 0.92709 0.92912 0.91577 0.91583 0.91298 0.91065 0.90911 0.92003 0.92410 0.92524 0.88653 0.94619 0.92991 0.92857 0.90442 0.89769 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.14 37.16 0.30 -0.91 16 2 C -0.07 -0.71 0.94 -153.39 -0.14 -0.85 16 3 C -0.14 -1.26 8.16 37.16 0.30 -0.96 16 4 C -0.11 -1.06 6.11 -25.61 -0.16 -1.22 16 5 C -0.11 -1.23 6.26 -25.07 -0.16 -1.38 16 6 C -0.12 -1.57 2.44 -89.78 -0.22 -1.79 16 7 H 0.09 1.18 6.22 -51.93 -0.32 0.85 16 8 C 0.52 9.47 6.83 -10.98 -0.08 9.40 16 9 O -0.55 -12.10 15.32 5.56 0.09 -12.01 16 10 N -0.60 -11.33 2.97 -172.77 -0.51 -11.85 16 11 C 0.11 1.68 6.31 -3.71 -0.02 1.66 16 12 C -0.14 -2.41 6.08 -26.61 -0.16 -2.57 16 13 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 14 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.00 11.31 55.43 0.63 -24.38 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.12 2.58 5.64 -3.71 -0.02 2.56 16 25 C -0.10 -1.27 5.23 -25.07 -0.13 -1.40 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 33 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.90 8.04 -51.93 -0.42 0.49 16 36 H 0.07 0.92 5.42 -51.93 -0.28 0.64 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.84 7.04 -51.93 -0.37 1.48 16 45 H 0.08 1.25 6.96 -51.93 -0.36 0.89 16 46 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -29.70 348.49 -9.09 -38.79 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.30 Total: 0.05 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.21 Total: -12.01 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.11 Total: -36.22 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.70 -9.09 -38.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.749 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds