Wall clock time and date at job start Tue Mar 31 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 110.01560 * 2 1 4 4 C 1.53876 * 110.03566 * 121.39394 * 2 1 3 5 5 C 1.54270 * 106.59912 * 119.28173 * 4 2 1 6 6 C 1.54890 * 104.19559 * 336.39323 * 5 4 2 7 7 H 1.08999 * 110.75424 * 279.44401 * 6 5 4 8 8 C 1.50701 * 110.75710 * 156.25383 * 6 5 4 9 9 O 1.21274 * 120.00355 * 274.53023 * 8 6 5 10 10 N 1.34778 * 119.99811 * 94.52532 * 8 6 5 11 11 C 1.46931 * 120.63137 * 354.52394 * 10 8 6 12 12 C 1.53192 * 108.77869 * 126.38831 * 11 10 8 13 13 C 1.53037 * 109.31065 * 54.63361 * 12 11 10 14 14 C 1.53044 * 109.53935 * 298.63278 * 13 12 11 15 15 H 1.09003 * 109.50062 * 301.41953 * 14 13 12 16 16 C 1.50700 * 109.50030 * 181.31863 * 14 13 12 17 17 H 1.08002 * 120.00392 * 240.00558 * 16 14 13 18 18 C 1.37879 * 119.99753 * 60.00011 * 16 14 13 19 19 N 1.31511 * 120.00098 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99782 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47209 * 90.00055 * 20 18 16 22 22 H 1.48504 * 109.47341 * 210.00075 * 20 18 16 23 23 H 1.48503 * 109.47315 * 330.00285 * 20 18 16 24 24 C 1.46927 * 120.63176 * 174.51534 * 10 8 6 25 25 C 1.54270 * 110.03291 * 238.56092 * 2 1 3 26 26 H 1.09006 * 109.46758 * 300.05582 * 1 2 3 27 27 H 1.09002 * 109.47559 * 60.05840 * 1 2 3 28 28 H 1.09000 * 109.47409 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47405 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47371 * 299.94021 * 3 2 1 31 31 H 1.09000 * 109.47076 * 59.94515 * 3 2 1 32 32 H 1.09000 * 110.02982 * 359.97438 * 4 2 1 33 33 H 1.09000 * 110.03311 * 238.56668 * 4 2 1 34 34 H 1.08997 * 110.48540 * 217.71071 * 5 4 2 35 35 H 1.09003 * 110.59250 * 95.12287 * 5 4 2 36 36 H 1.08999 * 109.58287 * 6.59968 * 11 10 8 37 37 H 1.08998 * 109.58321 * 246.17426 * 11 10 8 38 38 H 1.09001 * 109.49285 * 294.68163 * 12 11 10 39 39 H 1.08992 * 109.52435 * 174.60525 * 12 11 10 40 40 H 1.09002 * 109.45824 * 178.61724 * 13 12 11 41 41 H 1.08995 * 109.45155 * 58.65262 * 13 12 11 42 42 H 0.96998 * 120.00004 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58160 * 113.82240 * 24 10 8 44 44 H 1.08996 * 109.58206 * 353.40325 * 24 10 8 45 45 H 1.08995 * 110.48932 * 145.64439 * 25 2 1 46 46 H 1.09001 * 110.48178 * 22.99988 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0571 -0.7531 1.2340 5 6 2.8875 -1.9404 0.7042 6 6 2.3280 -2.1905 -0.7183 7 1 1.4048 -2.7682 -0.6742 8 6 3.3504 -2.8861 -1.5796 9 8 4.1865 -2.2375 -2.1720 10 7 3.3355 -4.2292 -1.6915 11 6 2.4075 -5.0371 -0.8885 12 6 1.6059 -5.9452 -1.8264 13 6 2.5718 -6.7650 -2.6848 14 6 3.4248 -5.8227 -3.5374 15 1 2.7758 -5.2135 -4.1665 16 6 4.3531 -6.6319 -4.4060 17 1 5.4222 -6.5088 -4.3151 18 6 3.8375 -7.5296 -5.3167 19 7 2.5357 -7.6792 -5.4277 20 14 4.9882 -8.5331 -6.3930 21 1 5.3258 -9.8051 -5.7051 22 1 4.3221 -8.8314 -7.6862 23 1 6.2315 -7.7606 -6.6432 24 6 4.2470 -4.9132 -2.6189 25 6 2.0584 -0.7560 -1.2366 26 1 -0.3633 0.5147 0.8896 27 1 -0.3634 0.5129 -0.8905 28 1 -0.3634 -1.0276 0.0005 29 1 3.1436 1.4273 0.0005 30 1 1.6961 1.9545 -0.8905 31 1 1.6944 1.9551 0.8895 32 1 1.2230 -1.1181 1.8331 33 1 2.6868 -0.0946 1.8324 34 1 2.7402 -2.8192 1.3321 35 1 3.9446 -1.6786 0.6578 36 1 1.7272 -4.3807 -0.3458 37 1 2.9709 -5.6471 -0.1826 38 1 0.9740 -5.3348 -2.4715 39 1 0.9823 -6.6176 -1.2373 40 1 2.0042 -7.4299 -3.3358 41 1 3.2199 -7.3563 -2.0380 42 1 2.1730 -8.3110 -6.0682 43 1 4.9605 -5.5131 -2.0540 44 1 4.7804 -4.1752 -3.2178 45 1 2.9810 -0.3007 -1.5966 46 1 1.3060 -0.7704 -2.0251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:04 Heat of formation + Delta-G solvation = -85.127515 kcal Electronic energy + Delta-G solvation = -22979.626735 eV Core-core repulsion = 19866.838604 eV Total energy + Delta-G solvation = -3112.788132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.49643 -39.52672 -38.18350 -35.40182 -33.54039 -32.84173 -31.87781 -29.88838 -28.10041 -27.25966 -26.54306 -25.19750 -23.37197 -22.76445 -21.01070 -19.65777 -19.60851 -18.60679 -18.09858 -16.88923 -16.63138 -16.19100 -15.76984 -15.33351 -15.09479 -14.67558 -14.65828 -14.53445 -14.43089 -14.09218 -13.93768 -13.74913 -13.60223 -12.93594 -12.88110 -12.73208 -12.66004 -12.50821 -12.34733 -12.04626 -11.94009 -11.86322 -11.66397 -11.54861 -11.40367 -11.35071 -11.29943 -11.23218 -10.86699 -10.59990 -10.42028 -9.48758 -8.12209 -6.27637 1.39575 1.40767 1.50925 1.64285 2.13777 2.42874 3.14068 3.44271 3.58565 3.73215 3.95418 4.11720 4.23791 4.30442 4.33689 4.37788 4.41243 4.51694 4.55417 4.62390 4.65231 4.66049 4.81196 4.86323 4.86425 4.89577 4.96615 5.02646 5.05580 5.11504 5.15390 5.17692 5.23948 5.28557 5.35308 5.42751 5.48072 5.49726 5.57111 5.60047 5.62572 5.91555 6.12285 6.33161 6.59114 6.81561 7.24536 7.40543 8.91420 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.033504 B = 0.003866 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.522436 B = 7240.977922 C = 7448.476666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.106 4.106 5 C -0.105 4.105 6 C -0.109 4.109 7 H 0.117 0.883 8 C 0.508 3.492 9 O -0.598 6.598 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.042 3.958 15 H -0.015 1.015 16 C -0.540 4.540 17 H 0.050 0.950 18 C 0.018 3.982 19 N -0.912 5.912 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.130 3.870 25 C -0.102 4.102 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.262 0.738 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 11.371 16.577 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 C -0.195 4.195 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.130 4.130 7 H 0.135 0.865 8 C 0.299 3.701 9 O -0.480 6.480 10 N -0.339 5.339 11 C -0.013 4.013 12 C -0.166 4.166 13 C -0.144 4.144 14 C 0.023 3.977 15 H 0.003 0.997 16 C -0.579 4.579 17 H 0.069 0.931 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.781 3.219 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.198 1.198 24 C 0.007 3.993 25 C -0.140 4.140 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.321 11.598 16.181 20.887 hybrid contribution 0.868 -0.793 -1.514 1.916 sum -5.454 10.805 14.667 19.016 Atomic orbital electron populations 1.21912 0.93009 1.02262 1.02186 1.21173 0.96450 0.95331 0.93736 1.21902 1.00388 0.95039 1.02198 1.22270 0.99782 0.95685 0.96637 1.22304 0.99307 1.00258 0.92389 1.22382 0.97402 0.97133 0.96073 0.86548 1.21347 0.85521 0.81706 0.81556 1.90606 1.41472 1.65861 1.50080 1.48414 1.38205 1.06075 1.41164 1.22042 0.92032 0.94340 0.92908 1.21923 0.97969 0.98563 0.98147 1.21419 0.97553 0.98501 0.96888 1.18871 0.93812 0.92728 0.92325 0.99653 1.21439 0.93109 1.22687 1.20644 0.93130 1.25682 0.96532 0.97878 0.98032 1.70003 1.12108 1.36618 1.36389 0.85600 0.78978 0.79100 0.78242 1.19559 1.20807 1.19793 1.21530 0.92151 0.94494 0.91144 1.22433 1.00723 0.92818 0.98032 0.91112 0.93064 0.92144 0.93559 0.93014 0.90980 0.89269 0.90689 0.89056 0.93039 0.86735 0.90034 0.93673 0.89051 0.91880 0.94462 0.92883 0.92326 0.93336 0.92635 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.14 71.98 0.59 -1.36 16 2 C -0.07 -1.17 0.94 -51.46 -0.05 -1.22 16 3 C -0.14 -2.29 8.16 71.98 0.59 -1.71 16 4 C -0.11 -1.61 6.11 31.32 0.19 -1.42 16 5 C -0.10 -2.08 6.26 31.67 0.20 -1.88 16 6 C -0.11 -2.76 2.44 -10.25 -0.03 -2.78 16 7 H 0.12 2.45 6.22 -2.39 -0.01 2.44 16 8 C 0.51 18.71 6.83 87.66 0.60 19.31 16 9 O -0.60 -27.40 15.32 -3.01 -0.05 -27.44 16 10 N -0.61 -22.64 2.97 -818.91 -2.43 -25.08 16 11 C 0.11 3.05 6.31 86.36 0.55 3.60 16 12 C -0.13 -4.30 6.08 30.67 0.19 -4.12 16 13 C -0.11 -4.78 4.96 30.62 0.15 -4.62 16 14 C 0.04 2.16 2.25 -11.46 -0.03 2.13 16 15 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 16 C -0.54 -30.55 8.56 25.60 0.22 -30.33 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 18 C 0.02 1.01 5.30 84.66 0.45 1.45 16 19 N -0.91 -52.57 11.31 21.45 0.24 -52.33 16 20 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 C 0.13 5.92 5.64 86.36 0.49 6.41 16 25 C -0.10 -2.57 5.23 31.67 0.17 -2.40 16 26 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 1.00 7.67 -2.39 -0.02 0.99 16 33 H 0.07 1.04 7.67 -2.39 -0.02 1.03 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.24 8.04 -2.39 -0.02 1.22 16 36 H 0.11 2.33 5.42 -2.39 -0.01 2.31 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.06 3.28 6.04 -2.39 -0.01 3.26 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.05 2.46 7.04 -2.39 -0.02 2.44 16 45 H 0.05 1.71 6.96 -2.39 -0.02 1.70 16 46 H 0.06 1.58 7.84 -2.39 -0.02 1.56 16 Total: -1.00 -68.71 348.49 4.98 -63.72 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.93 Total: 13.95 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.27 Total: -18.94 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.19 Total: -77.40 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.71 4.98 -63.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.403 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds