Wall clock time and date at job start Tue Mar 31 2020 01:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00103 * 2 1 4 4 H 1.48498 * 109.47035 * 240.00448 * 3 2 1 5 5 H 1.48502 * 109.46862 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47030 * 120.00273 * 3 2 1 7 7 C 1.37870 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00488 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47489 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47247 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00110 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00388 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64409 * 359.97438 * 13 11 10 15 15 C 1.54322 * 107.27149 * 178.95789 * 14 13 11 16 16 C 1.55282 * 103.00430 * 337.88615 * 15 14 13 17 17 H 1.09001 * 110.95548 * 277.33125 * 16 15 14 18 18 C 1.52999 * 111.09626 * 153.45081 * 16 15 14 19 19 C 1.53002 * 109.46692 * 187.81037 * 18 16 15 20 20 C 1.53004 * 109.47128 * 179.97438 * 19 18 16 21 21 C 1.52995 * 109.47070 * 59.99916 * 20 19 18 22 22 C 1.53002 * 109.47213 * 300.00032 * 21 20 19 23 23 C 1.52995 * 109.47481 * 67.80969 * 18 16 15 24 24 C 1.47419 * 125.65006 * 179.97438 * 13 11 10 25 25 H 0.97006 * 120.00009 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47181 * 59.99701 * 9 7 2 27 27 H 1.08998 * 109.47289 * 300.00256 * 9 7 2 28 28 H 1.08996 * 109.47144 * 59.99842 * 10 9 7 29 29 H 1.09001 * 109.47069 * 299.99954 * 10 9 7 30 30 H 1.09009 * 109.87859 * 298.37607 * 14 13 11 31 31 H 1.09002 * 109.88373 * 59.54097 * 14 13 11 32 32 H 1.09006 * 110.71959 * 96.16400 * 15 14 13 33 33 H 1.08997 * 110.71908 * 219.26179 * 15 14 13 34 34 H 1.08995 * 109.47370 * 307.80805 * 18 16 15 35 35 H 1.09003 * 109.47490 * 299.99579 * 19 18 16 36 36 H 1.09004 * 109.47271 * 59.99557 * 19 18 16 37 37 H 1.08997 * 109.46864 * 299.99824 * 20 19 18 38 38 H 1.09001 * 109.47340 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47488 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.47503 * 59.99873 * 21 20 19 41 41 H 1.08995 * 109.47023 * 299.99788 * 22 21 20 42 42 H 1.09006 * 109.46944 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.47648 * 299.99779 * 23 18 16 44 44 H 1.09003 * 109.47046 * 60.00209 * 23 18 16 45 45 H 1.09002 * 110.36926 * 322.95057 * 24 13 11 46 46 H 1.08995 * 110.36556 * 85.16341 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4918 -4.9671 -0.0025 12 8 0.2789 -4.9672 -0.0024 13 7 2.1656 -6.1344 -0.0041 14 6 3.6287 -6.2791 -0.0060 15 6 3.9397 -7.7904 0.0193 16 6 2.6389 -8.4051 0.6035 17 1 2.6354 -8.3479 1.6920 18 6 2.4517 -9.8485 0.1318 19 6 1.0733 -10.3518 0.5651 20 6 0.8857 -11.7950 0.0928 21 6 1.9695 -12.6793 0.7126 22 6 3.3479 -12.1760 0.2793 23 6 3.5355 -10.7324 0.7520 24 6 1.5577 -7.4774 -0.0044 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6047 0.8876 29 1 2.8712 -3.6039 -0.8923 30 1 4.0444 -5.8301 -0.9081 31 1 4.0498 -5.7991 0.8774 32 1 4.1216 -8.1637 -0.9886 33 1 4.7925 -7.9979 0.6656 34 1 2.5280 -9.8884 -0.9547 35 1 0.9969 -10.3119 1.6517 36 1 0.3011 -9.7220 0.1232 37 1 0.9619 -11.8345 -0.9938 38 1 -0.0965 -12.1534 0.4011 39 1 1.8362 -13.7073 0.3758 40 1 1.8934 -12.6398 1.7992 41 1 3.4241 -12.2156 -0.8072 42 1 4.1201 -12.8058 0.7213 43 1 4.5175 -10.3739 0.4434 44 1 3.4591 -10.6926 1.8387 45 1 0.6590 -7.4872 0.6124 46 1 1.3215 -7.7867 -1.0225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598154721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:17 Heat of formation + Delta-G solvation = -80.595946 kcal Electronic energy + Delta-G solvation = -21934.741758 eV Core-core repulsion = 18822.150130 eV Total energy + Delta-G solvation = -3112.591628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10437 -38.71718 -36.82290 -33.44277 -32.87983 -31.15233 -30.92488 -29.89139 -28.19250 -25.68767 -23.80109 -22.88188 -22.21531 -21.12974 -20.23569 -20.05762 -18.55185 -16.94084 -16.42957 -15.82340 -15.35724 -14.97187 -14.54561 -14.41694 -14.34515 -14.17400 -13.94662 -13.42082 -13.05764 -12.74859 -12.68587 -12.44930 -12.29254 -12.05585 -11.86681 -11.52506 -11.40885 -11.37092 -11.20070 -11.08939 -10.90151 -10.83534 -10.66507 -10.60140 -10.21566 -10.14403 -9.91112 -9.62107 -9.14868 -8.97645 -8.34362 -8.27521 -5.93460 -3.97910 3.28174 3.35056 3.35998 3.40708 3.43029 4.23236 4.33043 4.42877 4.49248 4.62541 4.66176 4.77065 5.01382 5.03942 5.15453 5.21675 5.25729 5.27803 5.34582 5.39675 5.41184 5.42771 5.50767 5.62643 5.65478 5.74204 5.75492 5.83785 5.86919 5.89457 5.91461 5.95107 6.01501 6.09267 6.12409 6.27004 6.28428 6.29299 6.62655 6.93645 7.76832 7.89609 7.92408 8.10287 8.41428 8.79964 9.10425 9.65316 11.17532 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.047436 B = 0.002801 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.124321 B = 9992.885774 C =10469.391357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.525 3.475 12 O -0.535 6.535 13 N -0.632 5.632 14 C 0.103 3.897 15 C -0.126 4.126 16 C -0.097 4.097 17 H 0.083 0.917 18 C -0.073 4.073 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.113 4.113 24 C 0.111 3.889 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.202 -25.931 0.844 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.164 4.164 11 C 0.316 3.684 12 O -0.410 6.410 13 N -0.369 5.369 14 C -0.021 4.021 15 C -0.164 4.164 16 C -0.116 4.116 17 H 0.102 0.898 18 C -0.092 4.092 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.012 4.012 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.321 -25.694 0.840 27.021 hybrid contribution 0.541 0.915 -0.009 1.063 sum 8.863 -24.779 0.831 26.329 Atomic orbital electron populations 1.69990 1.06059 1.26672 1.50149 1.25025 0.94828 0.99207 0.95332 0.86648 0.79541 0.83177 0.78534 1.20248 1.21284 1.20254 1.21182 0.92873 0.91014 1.51445 0.92678 1.18907 0.93194 0.89370 0.98598 1.21839 1.00600 0.91644 1.02278 1.21319 0.88123 0.84520 0.74440 1.90670 1.14289 1.86999 1.49027 1.48734 1.06788 1.05621 1.75729 1.21961 0.81589 0.96566 1.01955 1.22720 0.97759 0.94083 1.01794 1.22448 0.94808 0.93767 1.00584 0.89840 1.21100 0.95113 0.92647 1.00338 1.21637 0.96756 0.95943 1.01270 1.21530 0.98450 0.95209 1.00519 1.21542 0.94889 0.98706 1.00628 1.21541 0.96913 0.96267 1.00980 1.21583 0.98445 0.94486 1.00543 1.22153 0.96557 0.82071 1.00416 0.92899 0.95848 0.95841 0.90390 0.90396 0.91441 0.91428 0.90677 0.90214 0.90916 0.91865 0.91547 0.92066 0.92113 0.92355 0.92091 0.92077 0.92226 0.91820 0.91958 0.90800 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.88 13.29 55.43 0.74 -27.14 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.53 -15.25 9.11 -34.44 -0.31 -15.56 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.12 -2.65 4.83 -27.89 -0.13 -2.79 16 11 C 0.52 10.92 7.85 -10.99 -0.09 10.84 16 12 O -0.53 -13.38 16.24 5.55 0.09 -13.29 16 13 N -0.63 -9.96 3.33 -170.53 -0.57 -10.53 16 14 C 0.10 1.20 6.49 -3.06 -0.02 1.18 16 15 C -0.13 -1.08 5.67 -24.83 -0.14 -1.22 16 16 C -0.10 -0.91 2.57 -88.41 -0.23 -1.13 16 17 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.07 -0.57 1.71 -90.62 -0.15 -0.72 16 19 C -0.12 -0.96 4.98 -26.73 -0.13 -1.09 16 20 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 21 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 22 C -0.12 -0.75 5.92 -26.70 -0.16 -0.91 16 23 C -0.11 -0.75 5.07 -26.71 -0.14 -0.89 16 24 C 0.11 1.46 5.26 -2.54 -0.01 1.44 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.59 7.99 -51.93 -0.42 0.18 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.60 7.23 -51.93 -0.38 0.22 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.40 7.57 -51.93 -0.39 0.01 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 46 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -33.90 357.83 -10.15 -44.05 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -8.73 Total: -5.12 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.05 Total: -10.28 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.17 Total: -37.67 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.90 -10.15 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598154721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.544 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds