Wall clock time and date at job start Tue Mar 31 2020 01:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99703 * 2 1 4 4 H 1.48501 * 109.46762 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47249 * 299.99647 * 3 2 1 6 6 H 1.48501 * 109.47323 * 60.00172 * 3 2 1 7 7 C 1.37873 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00123 * 156.30273 * 7 2 1 9 9 C 1.50703 * 119.99821 * 336.29722 * 7 2 1 10 10 C 1.52998 * 115.55215 * 323.08942 * 9 7 2 11 11 N 1.46907 * 109.46815 * 291.88276 * 10 9 7 12 12 C 1.46835 * 111.00201 * 76.65007 * 11 10 9 13 13 C 1.53041 * 109.55685 * 185.84910 * 12 11 10 14 14 C 1.53138 * 109.26816 * 300.79860 * 13 12 11 15 15 C 1.53018 * 109.15103 * 57.54400 * 14 13 12 16 16 C 1.53087 * 109.51192 * 62.54601 * 15 14 13 17 17 C 1.53113 * 109.21296 * 176.86158 * 16 15 14 18 18 O 1.42903 * 109.39492 * 302.46051 * 17 16 15 19 19 C 1.42899 * 114.13066 * 61.19226 * 18 17 16 20 20 C 1.53113 * 109.41081 * 298.82579 * 19 18 17 21 21 C 1.46871 * 110.99524 * 200.84509 * 11 10 9 22 22 C 1.52997 * 117.49869 * 108.75786 * 9 7 2 23 23 C 1.52997 * 117.49824 * 177.41578 * 9 7 2 24 24 H 0.97006 * 120.00665 * 6.06588 * 1 2 3 25 25 H 1.08995 * 109.47478 * 171.87569 * 10 9 7 26 26 H 1.09002 * 109.47027 * 51.87395 * 10 9 7 27 27 H 1.09003 * 109.45888 * 65.82678 * 12 11 10 28 28 H 1.08998 * 109.45659 * 305.87466 * 12 11 10 29 29 H 1.09004 * 109.50632 * 180.85909 * 13 12 11 30 30 H 1.09000 * 109.50692 * 60.73687 * 13 12 11 31 31 H 1.08993 * 109.52598 * 297.64129 * 14 13 12 32 32 H 1.09000 * 109.52380 * 177.44221 * 14 13 12 33 33 H 1.09005 * 109.52641 * 56.92935 * 16 15 14 34 34 H 1.08999 * 109.52765 * 296.80228 * 16 15 14 35 35 H 1.09003 * 109.47830 * 62.43824 * 17 16 15 36 36 H 1.09004 * 109.48249 * 182.48102 * 17 16 15 37 37 H 1.09002 * 109.48138 * 58.80177 * 19 18 17 38 38 H 1.08993 * 109.48576 * 178.82778 * 19 18 17 39 39 H 1.09003 * 109.52273 * 177.38375 * 20 19 18 40 40 H 1.09006 * 109.51899 * 297.50052 * 20 19 18 41 41 H 1.08994 * 109.46492 * 54.27020 * 21 11 10 42 42 H 1.08996 * 109.46311 * 294.29288 * 21 11 10 43 43 H 1.09002 * 117.49862 * 215.00277 * 22 9 7 44 44 H 1.09004 * 117.49773 * 0.02562 * 22 9 7 45 45 H 1.09000 * 117.49881 * 359.97438 * 23 9 7 46 46 H 1.09003 * 117.50158 * 144.97333 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0162 -1.2332 -0.3764 9 6 1.3463 -2.4443 0.5236 10 6 0.4312 -2.2505 1.7343 11 7 1.2387 -1.8785 2.9038 12 6 1.6494 -0.4705 2.8334 13 6 2.6054 -0.1575 3.9868 14 6 1.9004 -0.4363 5.3173 15 6 1.4380 -1.8947 5.3445 16 6 2.6560 -2.8188 5.2660 17 6 2.1921 -4.2740 5.3727 18 8 1.4717 -4.4542 6.5936 19 6 0.2944 -3.6515 6.7012 20 6 0.6813 -2.1710 6.6477 21 6 0.5175 -2.1593 4.1521 22 6 0.9525 -3.5155 -0.4953 23 6 2.1411 -3.7490 0.4404 24 1 -0.4851 0.8353 -0.0888 25 1 -0.1004 -3.1794 1.9403 26 1 -0.2882 -1.4593 1.5230 27 1 0.7695 0.1686 2.9076 28 1 2.1528 -0.2862 1.8844 29 1 2.8978 0.8917 3.9427 30 1 3.4918 -0.7866 3.9058 31 1 1.0370 0.2215 5.4170 32 1 2.5922 -0.2581 6.1405 33 1 3.3381 -2.5930 6.0858 34 1 3.1670 -2.6681 4.3151 35 1 1.5436 -4.5115 4.5293 36 1 3.0597 -4.9339 5.3616 37 1 -0.3789 -3.8812 5.8753 38 1 -0.2047 -3.8630 7.6467 39 1 -0.2191 -1.5577 6.6829 40 1 1.3193 -1.9304 7.4982 41 1 0.2011 -3.2023 4.1620 42 1 -0.3580 -1.5136 4.2188 43 1 0.0414 -4.0822 -0.3031 44 1 1.1698 -3.3161 -1.5447 45 1 3.1399 -3.7031 0.0062 46 1 2.0124 -4.4691 1.2485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602778979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:12 Heat of formation + Delta-G solvation = -33.409195 kcal Electronic energy + Delta-G solvation = -24354.965664 eV Core-core repulsion = 21244.420207 eV Total energy + Delta-G solvation = -3110.545457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46672 -39.18938 -37.72469 -34.82538 -34.21353 -32.91378 -31.90121 -28.60504 -27.74317 -27.30999 -24.73139 -24.45331 -23.38489 -22.78598 -21.56558 -20.84966 -19.14555 -18.05422 -17.19595 -16.84852 -16.74099 -16.37766 -15.83532 -15.75092 -15.48065 -15.25247 -15.12033 -14.56367 -14.37849 -13.94547 -13.70203 -13.54658 -13.37582 -13.03703 -12.85735 -12.75740 -12.51595 -12.35167 -12.19935 -12.13675 -11.99346 -11.81482 -11.62184 -11.36514 -11.13905 -11.12496 -10.89302 -10.75961 -10.42868 -10.19711 -9.89241 -8.87423 -8.13185 -6.05248 1.32064 1.40155 1.47926 2.36704 2.91952 3.04677 3.20910 3.66445 3.77842 3.86257 3.89007 4.18869 4.24224 4.30337 4.33615 4.40394 4.44112 4.48850 4.57261 4.63994 4.69655 4.77198 4.81491 4.83662 4.84987 4.94004 4.98297 5.03202 5.05241 5.06107 5.07727 5.19637 5.22478 5.27475 5.33726 5.41413 5.45955 5.56532 5.57716 5.61695 5.65158 5.92805 6.34586 6.49356 6.49490 6.61477 6.88414 7.42477 8.87000 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020095 B = 0.006934 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.056449 B = 4037.316742 C = 4788.371796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.048 0.952 9 C 0.041 3.959 10 C 0.098 3.902 11 N -0.512 5.512 12 C 0.044 3.956 13 C -0.118 4.118 14 C -0.101 4.101 15 C -0.050 4.050 16 C -0.128 4.128 17 C 0.063 3.937 18 O -0.399 6.399 19 C 0.057 3.943 20 C -0.138 4.138 21 C 0.064 3.936 22 C -0.209 4.209 23 C -0.175 4.175 24 H 0.261 0.739 25 H 0.037 0.963 26 H 0.047 0.953 27 H -0.012 1.012 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.100 0.900 37 H 0.044 0.956 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.008 0.992 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -3.406 13.420 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.146 4.146 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.040 3.960 10 C -0.029 4.029 11 N -0.236 5.236 12 C -0.084 4.084 13 C -0.156 4.156 14 C -0.138 4.138 15 C -0.051 4.051 16 C -0.165 4.165 17 C -0.013 4.013 18 O -0.318 6.318 19 C -0.019 4.019 20 C -0.176 4.176 21 C -0.064 4.064 22 C -0.247 4.247 23 C -0.213 4.213 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.006 0.994 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.026 0.974 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.106 -3.687 13.637 14.283 hybrid contribution -0.778 1.723 -0.965 2.123 sum 1.327 -1.963 12.673 12.893 Atomic orbital electron populations 1.70071 1.07117 1.27233 1.48053 1.25309 0.94870 1.00711 0.93743 0.86364 0.80645 0.81861 0.77929 1.18648 1.21229 1.19704 1.20561 0.99213 0.92324 1.41883 0.93365 1.18885 0.96447 0.87850 0.92776 1.21442 0.94344 0.98046 0.89116 1.61770 1.41019 1.20065 1.00720 1.22548 0.96704 0.87517 1.01582 1.21670 0.98961 1.00555 0.94391 1.21569 0.99905 0.95137 0.97230 1.20519 0.95496 0.95520 0.93523 1.22036 0.97147 0.94541 1.02817 1.22598 0.96137 0.96616 0.85953 1.87853 1.39583 1.64722 1.39641 1.22691 0.86900 0.89795 1.02508 1.22197 1.01074 0.97328 0.96967 1.22220 0.94165 0.99596 0.90447 1.22945 0.97860 1.07686 0.96253 1.22691 0.94606 1.02402 1.01554 0.92923 0.94430 0.93467 0.99353 0.88132 0.92205 0.90901 0.93038 0.90195 0.91112 0.90532 0.93914 0.88179 0.93745 0.87191 0.90566 0.89974 0.91378 0.97384 0.91060 0.91732 0.91113 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.27 11.33 21.44 0.24 -48.03 16 2 C 0.06 2.90 3.33 84.65 0.28 3.19 16 3 Si 0.91 41.10 28.05 68.60 1.92 43.03 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.50 -26.51 7.23 25.60 0.18 -26.33 16 8 H 0.05 2.61 7.92 -2.91 -0.02 2.59 16 9 C 0.04 1.99 1.91 -52.93 -0.10 1.89 16 10 C 0.10 4.49 4.75 86.30 0.41 4.90 16 11 N -0.51 -20.48 3.82 -896.50 -3.43 -23.90 16 12 C 0.04 1.85 4.33 86.33 0.37 2.22 16 13 C -0.12 -3.93 5.75 30.65 0.18 -3.76 16 14 C -0.10 -2.78 4.80 30.65 0.15 -2.64 16 15 C -0.05 -1.36 0.52 -52.09 -0.03 -1.39 16 16 C -0.13 -3.39 4.42 30.66 0.14 -3.26 16 17 C 0.06 1.64 6.57 72.02 0.47 2.11 16 18 O -0.40 -10.36 10.76 -148.98 -1.60 -11.97 16 19 C 0.06 1.27 6.57 72.02 0.47 1.74 16 20 C -0.14 -3.03 4.93 30.70 0.15 -2.88 16 21 C 0.06 2.13 3.59 86.29 0.31 2.44 16 22 C -0.21 -9.47 9.91 30.62 0.30 -9.17 16 23 C -0.18 -7.45 9.96 30.62 0.30 -7.15 16 24 H 0.26 13.66 8.32 -92.70 -0.77 12.89 16 25 H 0.04 1.62 7.71 -2.39 -0.02 1.60 16 26 H 0.05 2.47 5.69 -2.39 -0.01 2.46 16 27 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.10 4.77 2.48 -2.39 -0.01 4.76 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.38 6.67 -2.39 -0.02 2.37 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.08 2.35 6.11 -2.39 -0.01 2.34 16 35 H 0.04 1.22 6.59 -2.39 -0.02 1.20 16 36 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.04 1.03 6.64 -2.39 -0.02 1.01 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.07 2.21 4.82 -2.39 -0.01 2.20 16 42 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 45 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -55.60 330.77 1.68 -53.93 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.94 Total: 25.03 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.60 Total: -38.08 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -3.18 Total: -71.93 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.60 Total: -11.97 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.92 Total: 43.03 kcal Total: -55.60 1.68 -53.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602778979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.517 kcal (2) G-P(sol) polarization free energy of solvation -55.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds