Wall clock time and date at job start Tue Mar 31 2020 02:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48501 * 109.47255 * 275.40309 * 3 2 1 5 5 H 1.48499 * 109.47214 * 35.40380 * 3 2 1 6 6 H 1.48500 * 109.47478 * 155.40117 * 3 2 1 7 7 C 1.37878 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99681 * 343.71465 * 7 2 1 9 9 C 1.50698 * 120.00245 * 163.72229 * 7 2 1 10 10 C 1.53007 * 115.54928 * 319.90459 * 9 7 2 11 11 N 1.46897 * 109.46856 * 280.29651 * 10 9 7 12 12 C 1.47843 * 111.00023 * 284.42227 * 11 10 9 13 13 C 1.54914 * 104.79538 * 213.63851 * 12 11 10 14 14 C 1.55146 * 101.65225 * 37.06820 * 13 12 11 15 15 H 1.08999 * 110.70391 * 82.73122 * 14 13 12 16 16 C 1.52994 * 110.84986 * 205.89634 * 14 13 12 17 17 C 1.53181 * 109.54678 * 293.50355 * 16 14 13 18 18 C 1.53103 * 109.16176 * 183.24732 * 17 16 14 19 19 O 1.42897 * 109.48487 * 57.47285 * 18 17 16 20 20 C 1.42901 * 114.10436 * 298.88895 * 19 18 17 21 21 C 1.53097 * 109.41074 * 61.15815 * 20 19 18 22 22 C 1.47446 * 110.99791 * 163.57577 * 11 10 9 23 23 C 1.52992 * 117.50218 * 174.23417 * 9 7 2 24 24 C 1.52998 * 60.03283 * 252.47231 * 23 9 7 25 25 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46696 * 40.29038 * 10 9 7 27 27 H 1.08991 * 109.47262 * 160.29094 * 10 9 7 28 28 H 1.09004 * 110.36827 * 332.46354 * 12 11 10 29 29 H 1.08995 * 110.37710 * 94.80668 * 12 11 10 30 30 H 1.08997 * 110.98873 * 278.97330 * 13 12 11 31 31 H 1.09001 * 111.01929 * 155.17219 * 13 12 11 32 32 H 1.08992 * 109.54880 * 53.68671 * 16 14 13 33 33 H 1.09003 * 109.52218 * 303.06808 * 17 16 14 34 34 H 1.09008 * 109.51981 * 63.24928 * 17 16 14 35 35 H 1.09004 * 109.39901 * 297.49400 * 18 17 16 36 36 H 1.08997 * 109.49096 * 177.51128 * 18 17 16 37 37 H 1.09002 * 109.47946 * 301.18178 * 20 19 18 38 38 H 1.08997 * 109.49344 * 181.15008 * 20 19 18 39 39 H 1.08998 * 109.52234 * 182.48576 * 21 20 19 40 40 H 1.09000 * 109.51899 * 62.30000 * 21 20 19 41 41 H 1.08995 * 109.88722 * 242.66071 * 22 11 10 42 42 H 1.08993 * 109.89064 * 3.69293 * 22 11 10 43 43 H 1.09004 * 117.49447 * 359.97438 * 23 9 7 44 44 H 1.08998 * 117.50516 * 144.96869 * 23 9 7 45 45 H 1.09005 * 117.50069 * 107.49854 * 24 23 9 46 46 H 1.08996 * 117.49788 * 252.51542 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3824 2.1124 -1.3938 5 1 1.5083 2.6170 0.8111 6 1 3.5991 1.4101 0.5828 7 6 2.0046 -1.1940 0.0005 8 1 1.4972 -2.1104 0.2632 9 6 3.4663 -1.2203 -0.3653 10 6 3.8722 -0.3115 -1.5273 11 7 3.5296 -0.9609 -2.7996 12 6 4.4864 -2.0424 -3.1169 13 6 4.5998 -2.0295 -4.6619 14 6 4.5273 -0.5104 -4.9687 15 1 5.5051 -0.0451 -4.8444 16 6 3.9889 -0.2649 -6.3796 17 6 4.9942 -0.7883 -7.4101 18 6 4.4851 -0.4658 -8.8175 19 8 4.2877 0.9440 -8.9416 20 6 3.3220 1.4801 -8.0350 21 6 3.7854 1.2378 -6.5961 22 6 3.5357 0.0117 -3.9078 23 6 4.2081 -2.5500 -0.2160 24 6 4.4763 -1.4105 0.7691 25 1 -0.4850 0.8400 -0.0004 26 1 3.3412 0.6372 -1.4491 27 1 4.9464 -0.1308 -1.4892 28 1 5.4560 -1.8362 -2.6636 29 1 4.1019 -3.0024 -2.7727 30 1 3.7649 -2.5605 -5.1191 31 1 5.5518 -2.4487 -4.9875 32 1 3.0378 -0.7830 -6.5023 33 1 5.9597 -0.3070 -7.2541 34 1 5.1018 -1.8673 -7.2985 35 1 3.5400 -0.9816 -8.9877 36 1 5.2175 -0.7966 -9.5538 37 1 2.3617 0.9898 -8.1950 38 1 3.2164 2.5511 -8.2074 39 1 3.0294 1.6066 -5.9029 40 1 4.7257 1.7613 -6.4233 41 1 2.5377 0.0886 -4.3391 42 1 3.8583 0.9869 -3.5434 43 1 3.6390 -3.4058 0.1471 44 1 4.9850 -2.7777 -0.9459 45 1 4.0837 -1.5166 1.7804 46 1 5.4295 -0.8883 0.6871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602798127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:49 Heat of formation + Delta-G solvation = -18.009083 kcal Electronic energy + Delta-G solvation = -23101.051498 eV Core-core repulsion = 19991.173840 eV Total energy + Delta-G solvation = -3109.877658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.97699 -38.60754 -36.54574 -34.15091 -32.10783 -31.36615 -30.61800 -28.54215 -26.57609 -25.01850 -23.91467 -23.58744 -21.42376 -20.62563 -20.51681 -19.86255 -19.04003 -16.61276 -16.37652 -16.13044 -15.35168 -15.26232 -14.92415 -14.73603 -14.19685 -13.94290 -13.63757 -13.31311 -13.13315 -12.83905 -12.53397 -12.34838 -12.19064 -11.74353 -11.64717 -11.46546 -11.41930 -11.26641 -11.01076 -10.89311 -10.49998 -10.44323 -10.30848 -10.25910 -10.08732 -9.81784 -9.57903 -9.32703 -9.18568 -8.63898 -8.22684 -7.57394 -6.07333 -3.95128 3.21842 3.37960 3.42425 3.71973 4.40419 4.43964 4.45955 4.53585 4.70513 4.84664 4.94833 4.98830 5.10906 5.18325 5.21479 5.27903 5.40746 5.47620 5.51950 5.59673 5.63317 5.68814 5.74268 5.77695 5.82132 5.91926 5.95486 5.96423 6.00275 6.09406 6.16192 6.20485 6.27304 6.34252 6.41999 6.51548 6.55558 6.63654 6.80247 7.02816 7.10454 7.20409 7.59574 7.77878 7.88495 8.59808 8.99753 9.60055 11.05679 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021937 B = 0.004876 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.079295 B = 5741.470397 C = 6504.201744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.876 3.124 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.262 1.262 7 C -0.467 4.467 8 H 0.074 0.926 9 C 0.023 3.977 10 C 0.083 3.917 11 N -0.503 5.503 12 C 0.048 3.952 13 C -0.124 4.124 14 C -0.102 4.102 15 H 0.070 0.930 16 C -0.076 4.076 17 C -0.149 4.149 18 C 0.060 3.940 19 O -0.387 6.387 20 C 0.061 3.939 21 C -0.154 4.154 22 C 0.047 3.953 23 C -0.189 4.189 24 C -0.214 4.214 25 H 0.263 0.737 26 H 0.067 0.933 27 H 0.014 0.986 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.306 0.056 -15.217 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.121 4.121 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.187 1.187 7 C -0.504 4.504 8 H 0.092 0.908 9 C 0.022 3.978 10 C -0.044 4.044 11 N -0.226 5.226 12 C -0.080 4.080 13 C -0.162 4.162 14 C -0.122 4.122 15 H 0.089 0.911 16 C -0.095 4.095 17 C -0.187 4.187 18 C -0.016 4.016 19 O -0.306 6.306 20 C -0.016 4.016 21 C -0.192 4.192 22 C -0.081 4.081 23 C -0.226 4.226 24 C -0.252 4.252 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.711 0.080 -15.266 18.093 hybrid contribution 1.121 1.150 0.311 1.636 sum 10.832 1.230 -14.955 18.506 Atomic orbital electron populations 1.69966 1.06364 1.26875 1.49374 1.24873 0.94333 0.98708 0.94182 0.87035 0.81047 0.84212 0.76986 1.21025 1.22477 1.18685 1.20212 0.89927 0.95112 1.45151 0.90780 1.19247 0.93596 0.93536 0.91438 1.22214 0.95392 0.97286 0.89531 1.63394 1.48472 1.09650 1.01063 1.23176 0.93896 0.97161 0.93767 1.22798 1.01526 0.95345 0.96513 1.22431 0.99011 0.96574 0.94167 0.91124 1.21166 0.98961 0.95569 0.93826 1.22244 0.99647 1.01754 0.95036 1.22574 1.00339 0.81944 0.96780 1.87904 1.61586 1.22318 1.58756 1.22593 0.91130 0.99169 0.88693 1.22287 1.02774 0.96768 0.97329 1.22923 0.99134 0.94758 0.91310 1.22840 1.03584 0.93488 1.02706 1.23212 1.00714 1.04455 0.96856 0.92735 0.91575 0.96754 0.94442 0.89870 0.90673 0.91527 0.90573 0.91277 0.90704 0.93252 0.89162 0.93119 0.89022 0.90346 0.91207 0.90653 0.93670 0.90150 0.90899 0.89746 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 2 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 3 Si 0.88 21.94 24.50 -169.99 -4.17 17.78 16 4 H -0.28 -6.83 6.71 56.52 0.38 -6.46 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.26 -6.34 7.06 56.52 0.40 -5.94 16 7 C -0.47 -13.26 9.51 -34.44 -0.33 -13.59 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 9 C 0.02 0.55 1.28 -155.63 -0.20 0.35 16 10 C 0.08 1.83 4.00 -3.82 -0.02 1.81 16 11 N -0.50 -10.01 5.12 -231.25 -1.18 -11.20 16 12 C 0.05 0.78 4.81 -2.29 -0.01 0.77 16 13 C -0.12 -1.60 5.76 -24.59 -0.14 -1.74 16 14 C -0.10 -1.33 2.48 -88.79 -0.22 -1.55 16 15 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 16 C -0.08 -0.85 1.66 -90.44 -0.15 -1.00 16 17 C -0.15 -1.42 5.23 -26.58 -0.14 -1.56 16 18 C 0.06 0.56 6.84 37.21 0.25 0.82 16 19 O -0.39 -4.43 10.77 -35.23 -0.38 -4.81 16 20 C 0.06 0.62 6.84 37.21 0.25 0.87 16 21 C -0.15 -1.68 5.13 -26.59 -0.14 -1.82 16 22 C 0.05 0.79 5.49 -2.83 -0.02 0.77 16 23 C -0.19 -3.92 8.78 -26.74 -0.23 -4.16 16 24 C -0.21 -4.62 9.89 -26.70 -0.26 -4.88 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 26 H 0.07 1.57 2.36 -51.93 -0.12 1.45 16 27 H 0.01 0.30 7.47 -51.93 -0.39 -0.09 16 28 H 0.04 0.60 6.86 -51.93 -0.36 0.25 16 29 H 0.08 1.42 7.20 -51.93 -0.37 1.05 16 30 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.89 8.11 -51.93 -0.42 0.46 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.65 7.62 -51.92 -0.40 0.25 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.89 7.19 -51.93 -0.37 0.52 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.30 7.49 -51.93 -0.39 0.91 16 42 H 0.04 0.78 7.45 -51.93 -0.39 0.39 16 43 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 44 H 0.07 1.34 5.69 -51.93 -0.30 1.04 16 45 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 46 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -30.58 339.67 -9.43 -40.01 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.15 Total: 2.08 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -1.44 Total: -22.63 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.41 Total: -37.54 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.38 Total: -4.81 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.17 Total: 17.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.58 -9.43 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602798127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.998 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds