Wall clock time and date at job start Tue Mar 31 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48504 * 109.47090 * 274.97893 * 3 2 1 5 5 H 1.48496 * 109.47251 * 34.98135 * 3 2 1 6 6 H 1.48500 * 109.46851 * 154.98071 * 3 2 1 7 7 C 1.37878 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00078 * 173.40906 * 7 2 1 9 9 C 1.50697 * 120.00212 * 353.40842 * 7 2 1 10 10 C 1.53000 * 115.54880 * 323.53602 * 9 7 2 11 11 N 1.46902 * 109.47277 * 295.15241 * 10 9 7 12 12 C 1.46848 * 110.99739 * 72.92466 * 11 10 9 13 13 C 1.53042 * 109.52446 * 174.16090 * 12 11 10 14 14 C 1.53113 * 109.27541 * 59.17686 * 13 12 11 15 15 C 1.53113 * 109.16606 * 302.34705 * 14 13 12 16 16 H 1.09002 * 109.49844 * 297.67657 * 15 14 13 17 17 O 1.42895 * 109.50577 * 177.59487 * 15 14 13 18 18 C 1.42907 * 113.99892 * 89.99742 * 17 15 14 19 19 C 1.53000 * 109.47018 * 179.97438 * 18 17 15 20 20 C 1.53006 * 117.49764 * 243.74695 * 19 18 17 21 21 C 1.53002 * 117.49687 * 175.09141 * 19 18 17 22 22 C 1.46840 * 111.00283 * 308.71728 * 11 10 9 23 23 C 1.53001 * 117.50235 * 109.20840 * 9 7 2 24 24 C 1.53000 * 117.50135 * 177.87232 * 9 7 2 25 25 H 0.96996 * 120.00010 * 4.99151 * 1 2 3 26 26 H 1.08999 * 109.47137 * 175.15560 * 10 9 7 27 27 H 1.08995 * 109.47484 * 55.15456 * 10 9 7 28 28 H 1.08999 * 109.46403 * 294.18081 * 12 11 10 29 29 H 1.09007 * 109.46619 * 54.14519 * 12 11 10 30 30 H 1.09000 * 109.50482 * 179.11917 * 13 12 11 31 31 H 1.08997 * 109.50171 * 299.23970 * 13 12 11 32 32 H 1.09000 * 109.52358 * 62.25709 * 14 13 12 33 33 H 1.09005 * 109.52185 * 182.43699 * 14 13 12 34 34 H 1.08996 * 109.47561 * 300.00388 * 18 17 15 35 35 H 1.09009 * 109.46963 * 60.00161 * 18 17 15 36 36 H 1.08993 * 115.55060 * 29.42210 * 19 18 17 37 37 H 1.08997 * 117.50113 * 0.02562 * 20 19 18 38 38 H 1.09000 * 117.49360 * 145.02586 * 20 19 18 39 39 H 1.08996 * 117.49705 * 214.98321 * 21 19 18 40 40 H 1.09003 * 117.49884 * 359.97243 * 21 19 18 41 41 H 1.09001 * 109.46310 * 305.85021 * 22 11 10 42 42 H 1.09000 * 109.46488 * 65.81666 * 22 11 10 43 43 H 1.09003 * 117.49796 * 215.00545 * 23 9 7 44 44 H 1.08999 * 117.49300 * 0.02562 * 23 9 7 45 45 H 1.08997 * 117.49693 * 359.96546 * 24 9 7 46 46 H 1.08994 * 117.50420 * 144.97346 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3914 2.1072 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5953 1.4120 0.5921 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1972 -0.1079 9 6 1.2585 -2.4949 0.1487 10 6 0.0551 -2.4609 1.0930 11 7 0.5150 -2.1969 2.4630 12 6 0.9347 -0.7981 2.6167 13 6 1.2680 -0.5225 4.0848 14 6 2.3891 -1.4637 4.5339 15 6 1.9452 -2.9131 4.3182 16 1 1.0708 -3.1214 4.9348 17 8 3.0075 -3.7967 4.6827 18 6 2.9846 -4.1986 6.0538 19 6 4.1602 -5.1383 6.3295 20 6 3.8344 -6.5764 6.7378 21 6 4.3791 -5.5908 7.7746 22 6 1.5923 -3.1193 2.8435 23 6 1.1667 -3.4017 -1.0802 24 6 2.0743 -3.7879 0.0905 25 1 -0.4850 0.8368 -0.0731 26 1 -0.4589 -3.4215 1.0612 27 1 -0.6293 -1.6721 0.7812 28 1 1.8167 -0.6140 2.0033 29 1 0.1269 -0.1393 2.2979 30 1 1.5945 0.5115 4.1960 31 1 0.3826 -0.6931 4.6971 32 1 3.2868 -1.2666 3.9479 33 1 2.6000 -1.3007 5.5908 34 1 3.0651 -3.3186 6.6919 35 1 2.0489 -4.7163 6.2652 36 1 5.0446 -4.9783 5.7128 37 1 2.7826 -6.8532 6.8096 38 1 4.5047 -7.3624 6.3900 39 1 5.4074 -5.7287 8.1084 40 1 3.6858 -5.2187 8.5290 41 1 1.2622 -4.1466 2.6893 42 1 2.4713 -2.9245 2.2290 43 1 0.2490 -3.9741 -1.2159 44 1 1.6463 -3.0576 -1.9965 45 1 3.1506 -3.6977 -0.0564 46 1 1.7541 -4.6142 0.7250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602813297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:11 Heat of formation + Delta-G solvation = 12.119080 kcal Electronic energy + Delta-G solvation = -23379.957593 eV Core-core repulsion = 20271.386390 eV Total energy + Delta-G solvation = -3108.571203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.15040 -37.97740 -36.64534 -35.07646 -32.50066 -31.65132 -29.38486 -26.62457 -25.88749 -25.56987 -22.54033 -22.23717 -21.78264 -20.99511 -20.73701 -19.26269 -18.67848 -16.72718 -16.13363 -15.70545 -15.17289 -14.83090 -14.41285 -14.30115 -13.91762 -13.71861 -13.57882 -12.87329 -12.67439 -12.56493 -12.37628 -11.91649 -11.70278 -11.56396 -11.22888 -11.12810 -10.97902 -10.76652 -10.58815 -10.46617 -10.37649 -10.21959 -10.11331 -10.01993 -9.78472 -9.76191 -9.45980 -9.06202 -8.90739 -8.74279 -8.01929 -6.99720 -6.06675 -4.10502 3.19450 3.28608 3.32282 3.53084 3.88802 4.27178 4.70676 4.78061 4.87104 4.96616 5.25102 5.30369 5.37320 5.41314 5.45850 5.53419 5.58484 5.66953 5.71413 5.73596 5.86995 5.94803 6.07513 6.13900 6.20437 6.22876 6.42113 6.45425 6.48847 6.57027 6.65830 6.67429 6.75622 6.81612 6.89291 7.00436 7.17500 7.32486 7.42240 7.52749 7.59152 7.62652 7.99642 8.25212 8.37151 8.52839 8.80906 9.41788 10.86974 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.005052 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.393075 B = 5540.932705 C = 6140.971217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.078 3.922 3 Si 0.882 3.118 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.483 4.483 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.081 3.919 11 N -0.520 5.520 12 C 0.038 3.962 13 C -0.120 4.120 14 C -0.136 4.136 15 C 0.096 3.904 16 H 0.057 0.943 17 O -0.381 6.381 18 C 0.095 3.905 19 C -0.149 4.149 20 C -0.178 4.178 21 C -0.177 4.177 22 C 0.060 3.940 23 C -0.204 4.204 24 C -0.210 4.210 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.134 0.866 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 -5.877 11.836 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.124 4.124 3 Si 0.709 3.291 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.520 4.520 8 H 0.076 0.924 9 C 0.023 3.977 10 C -0.046 4.046 11 N -0.244 5.244 12 C -0.089 4.089 13 C -0.158 4.158 14 C -0.174 4.174 15 C 0.038 3.962 16 H 0.075 0.925 17 O -0.299 6.299 18 C 0.018 3.982 19 C -0.167 4.167 20 C -0.215 4.215 21 C -0.214 4.214 22 C -0.069 4.069 23 C -0.243 4.243 24 C -0.247 4.247 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.151 0.849 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.992 -5.867 12.111 13.786 hybrid contribution 1.088 0.912 -0.481 1.499 sum 4.080 -4.955 11.630 13.284 Atomic orbital electron populations 1.69674 1.05680 1.26662 1.49257 1.24899 0.94842 0.98730 0.93941 0.86732 0.80378 0.83687 0.78329 1.20593 1.20541 1.19556 1.20517 0.93063 0.89095 1.49311 0.92445 1.19735 0.95317 0.88636 0.94013 1.22110 0.97134 1.00995 0.84340 1.62254 1.33762 1.03404 1.24958 1.22628 1.03576 0.89801 0.92926 1.21683 0.97270 0.97690 0.99156 1.22025 0.99808 0.95494 1.00033 1.22153 0.88111 0.88344 0.97596 0.92452 1.87881 1.50828 1.65942 1.25273 1.21944 0.95921 0.96079 0.84272 1.22167 1.00717 0.95923 0.97920 1.23062 1.02032 0.92965 1.03438 1.22965 1.02331 1.04123 0.92025 1.22010 0.95837 0.96856 0.92159 1.22932 0.99683 1.07517 0.94147 1.22959 0.96766 1.01635 1.03375 0.92558 0.95303 0.84922 0.89892 0.90073 0.92537 0.92623 0.91454 0.93256 0.93359 0.93574 0.86909 0.88720 0.88739 0.88606 0.88814 0.92167 0.92370 0.91822 0.90840 0.91083 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.38 9.01 55.43 0.50 -21.88 16 2 C 0.08 1.97 3.06 -17.82 -0.05 1.92 16 3 Si 0.88 19.97 29.14 -169.99 -4.95 15.02 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.48 -12.48 6.99 -34.44 -0.24 -12.72 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.02 0.59 1.16 -155.66 -0.18 0.41 16 10 C 0.08 1.90 5.21 -3.82 -0.02 1.88 16 11 N -0.52 -11.21 4.86 -234.67 -1.14 -12.35 16 12 C 0.04 0.83 3.77 -3.83 -0.01 0.81 16 13 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 14 C -0.14 -2.34 5.62 -26.61 -0.15 -2.48 16 15 C 0.10 1.68 2.77 -26.65 -0.07 1.61 16 16 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 17 O -0.38 -6.46 9.99 -35.23 -0.35 -6.81 16 18 C 0.09 1.26 6.03 37.16 0.22 1.48 16 19 C -0.15 -1.73 6.06 -90.62 -0.55 -2.28 16 20 C -0.18 -1.76 10.18 -26.69 -0.27 -2.03 16 21 C -0.18 -1.62 10.25 -26.69 -0.27 -1.89 16 22 C 0.06 1.21 3.70 -3.84 -0.01 1.20 16 23 C -0.20 -4.66 9.93 -26.69 -0.26 -4.92 16 24 C -0.21 -4.64 7.75 -26.69 -0.21 -4.84 16 25 H 0.26 6.50 8.32 -40.82 -0.34 6.16 16 26 H 0.03 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.13 3.39 5.19 -51.93 -0.27 3.12 16 28 H 0.08 2.00 4.14 -51.93 -0.22 1.78 16 29 H 0.08 1.90 6.53 -51.92 -0.34 1.56 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.05 0.60 7.94 -51.93 -0.41 0.19 16 35 H 0.05 0.58 7.82 -51.92 -0.41 0.17 16 36 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.09 0.90 8.03 -51.93 -0.42 0.49 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.21 7.27 -51.93 -0.38 0.84 16 42 H 0.06 1.32 6.06 -51.93 -0.31 1.00 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 45 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 46 H 0.07 1.43 7.01 -51.93 -0.36 1.06 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -25.51 344.25 -11.13 -36.64 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.12 Total: 8.38 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -2.25 Total: -24.19 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: -0.64 Total: -34.23 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.35 Total: -6.81 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.95 Total: 15.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -25.51 -11.13 -36.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602813297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.761 kcal (2) G-P(sol) polarization free energy of solvation -25.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds