Wall clock time and date at job start Tue Mar 31 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48504 * 109.47090 * 274.97893 * 3 2 1 5 5 H 1.48496 * 109.47251 * 34.98135 * 3 2 1 6 6 H 1.48500 * 109.46851 * 154.98071 * 3 2 1 7 7 C 1.37878 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00078 * 173.40906 * 7 2 1 9 9 C 1.50697 * 120.00212 * 353.40842 * 7 2 1 10 10 C 1.53000 * 115.54880 * 323.53602 * 9 7 2 11 11 N 1.46902 * 109.47277 * 295.15241 * 10 9 7 12 12 C 1.46848 * 110.99739 * 72.92466 * 11 10 9 13 13 C 1.53042 * 109.52446 * 174.16090 * 12 11 10 14 14 C 1.53113 * 109.27541 * 59.17686 * 13 12 11 15 15 C 1.53113 * 109.16606 * 302.34705 * 14 13 12 16 16 H 1.09002 * 109.49844 * 297.67657 * 15 14 13 17 17 O 1.42895 * 109.50577 * 177.59487 * 15 14 13 18 18 C 1.42907 * 113.99892 * 89.99742 * 17 15 14 19 19 C 1.53000 * 109.47018 * 179.97438 * 18 17 15 20 20 C 1.53006 * 117.49764 * 243.74695 * 19 18 17 21 21 C 1.53002 * 117.49687 * 175.09141 * 19 18 17 22 22 C 1.46840 * 111.00283 * 308.71728 * 11 10 9 23 23 C 1.53001 * 117.50235 * 109.20840 * 9 7 2 24 24 C 1.53000 * 117.50135 * 177.87232 * 9 7 2 25 25 H 0.96996 * 120.00010 * 4.99151 * 1 2 3 26 26 H 1.08999 * 109.47137 * 175.15560 * 10 9 7 27 27 H 1.08995 * 109.47484 * 55.15456 * 10 9 7 28 28 H 1.08999 * 109.46403 * 294.18081 * 12 11 10 29 29 H 1.09007 * 109.46619 * 54.14519 * 12 11 10 30 30 H 1.09000 * 109.50482 * 179.11917 * 13 12 11 31 31 H 1.08997 * 109.50171 * 299.23970 * 13 12 11 32 32 H 1.09000 * 109.52358 * 62.25709 * 14 13 12 33 33 H 1.09005 * 109.52185 * 182.43699 * 14 13 12 34 34 H 1.08996 * 109.47561 * 300.00388 * 18 17 15 35 35 H 1.09009 * 109.46963 * 60.00161 * 18 17 15 36 36 H 1.08993 * 115.55060 * 29.42210 * 19 18 17 37 37 H 1.08997 * 117.50113 * 0.02562 * 20 19 18 38 38 H 1.09000 * 117.49360 * 145.02586 * 20 19 18 39 39 H 1.08996 * 117.49705 * 214.98321 * 21 19 18 40 40 H 1.09003 * 117.49884 * 359.97243 * 21 19 18 41 41 H 1.09001 * 109.46310 * 305.85021 * 22 11 10 42 42 H 1.09000 * 109.46488 * 65.81666 * 22 11 10 43 43 H 1.09003 * 117.49796 * 215.00545 * 23 9 7 44 44 H 1.08999 * 117.49300 * 0.02562 * 23 9 7 45 45 H 1.08997 * 117.49693 * 359.96546 * 24 9 7 46 46 H 1.08994 * 117.50420 * 144.97346 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3914 2.1072 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5953 1.4120 0.5921 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1972 -0.1079 9 6 1.2585 -2.4949 0.1487 10 6 0.0551 -2.4609 1.0930 11 7 0.5150 -2.1969 2.4630 12 6 0.9347 -0.7981 2.6167 13 6 1.2680 -0.5225 4.0848 14 6 2.3891 -1.4637 4.5339 15 6 1.9452 -2.9131 4.3182 16 1 1.0708 -3.1214 4.9348 17 8 3.0075 -3.7967 4.6827 18 6 2.9846 -4.1986 6.0538 19 6 4.1602 -5.1383 6.3295 20 6 3.8344 -6.5764 6.7378 21 6 4.3791 -5.5908 7.7746 22 6 1.5923 -3.1193 2.8435 23 6 1.1667 -3.4017 -1.0802 24 6 2.0743 -3.7879 0.0905 25 1 -0.4850 0.8368 -0.0731 26 1 -0.4589 -3.4215 1.0612 27 1 -0.6293 -1.6721 0.7812 28 1 1.8167 -0.6140 2.0033 29 1 0.1269 -0.1393 2.2979 30 1 1.5945 0.5115 4.1960 31 1 0.3826 -0.6931 4.6971 32 1 3.2868 -1.2666 3.9479 33 1 2.6000 -1.3007 5.5908 34 1 3.0651 -3.3186 6.6919 35 1 2.0489 -4.7163 6.2652 36 1 5.0446 -4.9783 5.7128 37 1 2.7826 -6.8532 6.8096 38 1 4.5047 -7.3624 6.3900 39 1 5.4074 -5.7287 8.1084 40 1 3.6858 -5.2187 8.5290 41 1 1.2622 -4.1466 2.6893 42 1 2.4713 -2.9245 2.2290 43 1 0.2490 -3.9741 -1.2159 44 1 1.6463 -3.0576 -1.9965 45 1 3.1506 -3.6977 -0.0564 46 1 1.7541 -4.6142 0.7250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602813297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:10 Heat of formation + Delta-G solvation = -0.633869 kcal Electronic energy + Delta-G solvation = -23380.510602 eV Core-core repulsion = 20271.386390 eV Total energy + Delta-G solvation = -3109.124212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69279 -39.24529 -37.86017 -36.57858 -34.42955 -33.24598 -30.86622 -27.84576 -27.63278 -27.38780 -23.85310 -23.38367 -23.23244 -22.74588 -21.68137 -21.04275 -20.30188 -18.24357 -17.69889 -16.91596 -16.71376 -16.39248 -15.85393 -15.62587 -15.45703 -15.32007 -15.03421 -14.51139 -14.04490 -14.00162 -13.88518 -13.48168 -13.37579 -12.97896 -12.84235 -12.42957 -12.36413 -12.25733 -12.10744 -12.00950 -11.86955 -11.75845 -11.53762 -11.41541 -11.30463 -11.23201 -11.01384 -10.84197 -10.62513 -10.24626 -9.89952 -8.78281 -8.01112 -6.10041 1.36172 1.42059 1.49075 2.38169 2.48698 2.94040 3.00037 3.53178 3.71561 3.91338 3.92199 3.99710 4.02247 4.13033 4.26337 4.31522 4.36506 4.38700 4.56853 4.61524 4.67566 4.69477 4.72341 4.76098 4.78570 4.85223 4.93179 4.99923 5.02094 5.06451 5.15193 5.16378 5.18918 5.21912 5.25663 5.28813 5.43601 5.50333 5.59294 5.59998 5.80943 6.07603 6.33020 6.40231 6.57738 6.71864 6.82184 7.43665 8.91046 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.005052 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.393075 B = 5540.932705 C = 6140.971217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.056 3.944 3 Si 0.926 3.074 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.038 0.962 9 C 0.006 3.994 10 C 0.087 3.913 11 N -0.516 5.516 12 C 0.043 3.957 13 C -0.114 4.114 14 C -0.130 4.130 15 C 0.104 3.896 16 H 0.070 0.930 17 O -0.399 6.399 18 C 0.091 3.909 19 C -0.173 4.173 20 C -0.178 4.178 21 C -0.158 4.158 22 C 0.066 3.934 23 C -0.205 4.205 24 C -0.192 4.192 25 H 0.265 0.735 26 H 0.034 0.966 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.538 -6.273 13.981 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.145 4.145 3 Si 0.752 3.248 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.538 4.538 8 H 0.056 0.944 9 C 0.005 3.995 10 C -0.041 4.041 11 N -0.239 5.239 12 C -0.085 4.085 13 C -0.152 4.152 14 C -0.168 4.168 15 C 0.046 3.954 16 H 0.088 0.912 17 O -0.319 6.319 18 C 0.015 3.985 19 C -0.192 4.192 20 C -0.215 4.215 21 C -0.194 4.194 22 C -0.062 4.062 23 C -0.244 4.244 24 C -0.229 4.229 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.114 -6.270 14.262 15.888 hybrid contribution 1.070 0.985 -1.151 1.855 sum 4.184 -5.285 13.111 14.743 Atomic orbital electron populations 1.69774 1.06315 1.27162 1.49193 1.25273 0.95336 1.00504 0.93418 0.86051 0.79368 0.81229 0.78167 1.20661 1.19573 1.19966 1.20536 0.92246 0.90556 1.50489 0.94415 1.19785 0.96091 0.88696 0.94971 1.21931 0.96536 1.00350 0.85272 1.62277 1.34198 1.03694 1.23731 1.22456 1.01429 0.89453 0.95114 1.21630 0.98264 0.98718 0.96633 1.21969 0.98491 0.94929 1.01407 1.21954 0.88924 0.88836 0.95682 0.91201 1.87862 1.50458 1.65812 1.27732 1.22156 0.97065 0.96917 0.82403 1.22127 0.99922 0.97062 1.00052 1.23158 1.02555 0.92298 1.03505 1.23073 1.03388 1.02197 0.90783 1.21921 0.94093 0.96303 0.93930 1.22953 1.00378 1.07345 0.93687 1.22870 0.96217 1.01000 1.02815 0.92463 0.94748 0.87070 0.92504 0.92144 0.91311 0.91190 0.93356 0.90353 0.92361 0.92738 0.88235 0.88364 0.88095 0.87287 0.87615 0.92273 0.95174 0.90466 0.91671 0.91674 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.87 9.01 21.45 0.19 -45.68 16 2 C 0.06 2.87 3.06 84.65 0.26 3.13 16 3 Si 0.93 41.24 29.14 68.60 2.00 43.24 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.50 -26.51 6.99 25.60 0.18 -26.33 16 8 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 9 C 0.01 0.30 1.16 -52.93 -0.06 0.24 16 10 C 0.09 4.08 5.21 86.30 0.45 4.53 16 11 N -0.52 -22.12 4.86 -896.36 -4.36 -26.47 16 12 C 0.04 1.87 3.77 86.33 0.33 2.20 16 13 C -0.11 -3.96 6.09 30.65 0.19 -3.77 16 14 C -0.13 -4.24 5.62 30.67 0.17 -4.07 16 15 C 0.10 3.50 2.77 30.64 0.08 3.58 16 16 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 17 O -0.40 -13.04 9.99 -148.98 -1.49 -14.53 16 18 C 0.09 2.22 6.03 71.98 0.43 2.65 16 19 C -0.17 -3.72 6.06 -10.79 -0.07 -3.79 16 20 C -0.18 -3.12 10.18 30.62 0.31 -2.81 16 21 C -0.16 -2.42 10.25 30.62 0.31 -2.10 16 22 C 0.07 2.65 3.70 86.33 0.32 2.97 16 23 C -0.20 -9.37 9.93 30.62 0.30 -9.07 16 24 C -0.19 -8.49 7.75 30.62 0.24 -8.25 16 25 H 0.26 13.14 8.32 -92.71 -0.77 12.37 16 26 H 0.03 1.54 8.09 -2.39 -0.02 1.52 16 27 H 0.11 5.77 5.19 -2.39 -0.01 5.76 16 28 H 0.06 2.78 4.14 -2.39 -0.01 2.77 16 29 H 0.06 2.84 6.53 -2.38 -0.02 2.83 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.11 7.94 -2.38 -0.02 2.10 16 34 H 0.06 1.29 7.94 -2.39 -0.02 1.27 16 35 H 0.05 1.23 7.82 -2.38 -0.02 1.21 16 36 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 1.65 8.03 -2.39 -0.02 1.63 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 2.34 7.27 -2.39 -0.02 2.33 16 42 H 0.03 1.38 6.06 -2.39 -0.01 1.37 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 46 H 0.08 3.36 7.01 -2.39 -0.02 3.35 16 Total: -1.00 -54.59 344.25 0.73 -53.86 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.93 Total: 30.48 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 3.45 Total: -40.89 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -4.16 Total: -72.15 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.49 Total: -14.53 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.00 Total: 43.24 kcal Total: -54.59 0.73 -53.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602813297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.221 kcal (2) G-P(sol) polarization free energy of solvation -54.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds