Wall clock time and date at job start Tue Mar 31 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52957 * 109.35178 * 2 1 4 4 C 1.53234 * 109.40348 * 183.67047 * 3 2 1 5 5 C 1.51277 * 108.53194 * 305.37110 * 4 3 2 6 6 C 1.32998 * 120.84605 * 231.36902 * 5 4 3 7 7 C 1.47096 * 119.99901 * 347.79529 * 6 5 4 8 8 O 1.21614 * 120.00613 * 353.02012 * 7 6 5 9 9 N 1.34786 * 119.99729 * 173.01945 * 7 6 5 10 10 C 1.46496 * 120.00086 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47056 * 300.00520 * 11 10 9 13 13 C 1.52999 * 109.47105 * 60.00016 * 11 10 9 14 14 C 1.50698 * 109.47064 * 180.02562 * 11 10 9 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99845 * 179.97438 * 14 11 10 17 17 N 1.31518 * 120.00131 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99976 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47063 * 60.00655 * 18 16 14 20 20 H 1.48502 * 109.47188 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47492 * 300.00103 * 18 16 14 22 22 C 1.51268 * 118.30043 * 51.34538 * 5 4 3 23 23 C 1.52958 * 109.41062 * 120.31448 * 2 1 3 24 24 H 1.09000 * 109.47274 * 299.82827 * 1 2 3 25 25 H 1.09005 * 109.47301 * 59.82737 * 1 2 3 26 26 H 1.08993 * 109.47237 * 179.82250 * 1 2 3 27 27 H 1.08999 * 109.41311 * 240.17468 * 2 1 3 28 28 H 1.09007 * 109.48429 * 303.64213 * 3 2 1 29 29 H 1.08994 * 109.48828 * 63.68904 * 3 2 1 30 30 H 1.08999 * 109.63079 * 185.65991 * 4 3 2 31 31 H 1.09000 * 109.78683 * 65.17668 * 4 3 2 32 32 H 1.07997 * 119.99606 * 167.79678 * 6 5 4 33 33 H 0.96998 * 119.99738 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47186 * 300.00617 * 10 9 7 35 35 H 1.09005 * 109.46676 * 60.00323 * 10 9 7 36 36 H 1.08989 * 109.47292 * 59.99726 * 12 11 10 37 37 H 1.09000 * 109.47180 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47127 * 299.99358 * 12 11 10 39 39 H 1.09003 * 109.47079 * 60.00322 * 13 11 10 40 40 H 1.08996 * 109.47213 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.46980 * 300.00401 * 13 11 10 42 42 H 0.96998 * 120.00274 * 179.97438 * 17 16 14 43 43 H 1.08994 * 109.62580 * 188.93316 * 22 5 4 44 44 H 1.09000 * 109.61850 * 68.36781 * 22 5 4 45 45 H 1.08994 * 109.48408 * 296.34705 * 23 2 1 46 46 H 1.08998 * 109.48331 * 56.38945 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0369 1.4432 0.0000 4 6 3.5664 1.4455 -0.0925 5 6 4.1172 0.5913 1.0280 6 6 5.0600 1.0586 1.8414 7 6 5.7703 2.3023 1.5062 8 8 5.5881 2.8352 0.4283 9 7 6.6232 2.8514 2.3938 10 6 7.3312 4.0897 2.0598 11 6 8.2287 4.4957 3.2304 12 6 7.3706 4.7191 4.4773 13 6 9.2449 3.3849 3.5030 14 6 8.9564 5.7699 2.8871 15 1 8.7946 6.2430 1.9298 16 6 9.8280 6.3322 3.7954 17 7 10.0247 5.7563 4.9614 18 14 10.7307 7.9112 3.3696 19 1 9.7443 8.9891 3.1044 20 1 11.6017 8.3053 4.5059 21 1 11.5640 7.6942 2.1598 22 6 3.5679 -0.8076 1.1998 23 6 2.0384 -0.7282 1.2454 24 1 -0.3634 0.5112 0.8915 25 1 -0.3634 0.5165 -0.8885 26 1 -0.3633 -1.0276 -0.0032 27 1 1.8923 -0.5113 -0.8919 28 1 1.6202 1.9749 -0.8555 29 1 1.7277 1.9371 0.9211 30 1 3.9378 2.4653 0.0081 31 1 3.8786 1.0353 -1.0529 32 1 5.3039 0.5249 2.7480 33 1 6.7683 2.4266 3.2536 34 1 7.9420 3.9306 1.1711 35 1 6.6071 4.8811 1.8660 36 1 6.8440 3.7978 4.7258 37 1 8.0100 5.0088 5.3112 38 1 6.6466 5.5105 4.2832 39 1 9.8563 3.2258 2.6147 40 1 9.8846 3.6744 4.3367 41 1 8.7182 2.4636 3.7515 42 1 10.6381 6.1516 5.6003 43 1 3.9402 -1.2353 2.1306 44 1 3.8774 -1.4281 0.3589 45 1 1.7291 -0.1828 2.1370 46 1 1.6227 -1.7354 1.2726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837889220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:16 Heat of formation + Delta-G solvation = -51.281185 kcal Electronic energy + Delta-G solvation = -22110.161505 eV Core-core repulsion = 18998.841060 eV Total energy + Delta-G solvation = -3111.320445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.73088 -38.32108 -36.35261 -33.65449 -33.24793 -31.08388 -30.89002 -29.02630 -25.86752 -25.70722 -25.20152 -23.93874 -23.06251 -21.01988 -20.14848 -18.96037 -18.32878 -16.73417 -15.73034 -15.55255 -14.88778 -14.67279 -14.50800 -14.44420 -14.25344 -13.72503 -13.66522 -12.93177 -12.82394 -12.74288 -12.52187 -12.34159 -12.12572 -11.81867 -11.61535 -11.36897 -11.18079 -11.12657 -10.90636 -10.83346 -10.72361 -10.56380 -10.35772 -10.33227 -10.17510 -9.61182 -9.34438 -9.09483 -8.83361 -8.73053 -8.40200 -8.20292 -6.00711 -4.10855 1.55481 3.30927 3.35109 3.38625 3.69598 3.87379 4.41186 4.55059 4.62065 4.67200 4.93740 4.98314 5.21958 5.25842 5.27604 5.40973 5.41614 5.50706 5.51658 5.59827 5.71233 5.74408 5.85008 5.98631 6.01356 6.07172 6.19826 6.28935 6.35687 6.36052 6.53930 6.60617 6.74246 6.84985 6.86966 6.97949 7.04115 7.14135 7.38479 7.57499 7.70691 8.02753 8.11550 8.21285 8.40530 8.80165 8.90335 9.54831 11.00679 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.040293 B = 0.003074 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.737795 B = 9106.797730 C = 9373.124854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.111 4.111 4 C -0.120 4.120 5 C -0.033 4.033 6 C -0.223 4.223 7 C 0.536 3.464 8 O -0.552 6.552 9 N -0.712 5.712 10 C 0.132 3.868 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.506 4.506 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.092 4.092 23 C -0.111 4.111 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.398 0.602 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.006 0.994 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.006 0.994 42 H 0.260 0.740 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.563 -13.268 -4.806 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.148 4.148 4 C -0.157 4.157 5 C -0.035 4.035 6 C -0.244 4.244 7 C 0.326 3.674 8 O -0.434 6.434 9 N -0.361 5.361 10 C 0.009 3.991 11 C 0.056 3.944 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.545 4.545 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.129 4.129 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.233 0.767 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.545 -12.827 -5.365 20.122 hybrid contribution 0.651 0.549 0.347 0.920 sum -13.894 -12.279 -5.018 19.209 Atomic orbital electron populations 1.21840 0.95420 1.01414 1.01799 1.21180 0.95280 0.96697 0.98317 1.21660 0.95498 0.95692 1.01973 1.21582 0.94050 1.03822 0.96216 1.22608 0.91960 0.94473 0.94425 1.22440 1.01420 0.98850 1.01712 1.18549 0.80053 0.84417 0.84417 1.90564 1.64578 1.64503 1.23756 1.46261 1.43706 1.27322 1.18802 1.21701 0.94414 0.83326 0.99662 1.18342 0.91350 0.94688 0.90063 1.21830 0.98518 0.96633 1.01881 1.21833 0.99981 0.95048 1.02031 1.20962 1.24407 1.07377 1.01758 0.92502 1.24881 0.96442 0.97259 0.94922 1.69796 1.36485 1.39357 1.06882 0.86633 0.79693 0.83680 0.77849 1.20280 1.21332 1.20288 1.20939 0.95837 0.93483 1.02616 1.21621 0.94456 1.00395 0.98364 0.92730 0.92730 0.92914 0.91233 0.91722 0.92081 0.85812 0.91013 0.85960 0.76713 0.92765 0.92774 0.97474 0.89611 0.95475 0.95461 0.89611 0.97464 0.92963 0.90907 0.90055 0.91721 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.18 37.16 0.34 -0.76 16 2 C -0.10 -0.84 2.62 -90.66 -0.24 -1.07 16 3 C -0.11 -1.17 5.21 -26.63 -0.14 -1.31 16 4 C -0.12 -1.58 5.29 -27.48 -0.15 -1.72 16 5 C -0.03 -0.41 5.39 -100.60 -0.54 -0.95 16 6 C -0.22 -3.10 9.66 -37.81 -0.37 -3.46 16 7 C 0.54 9.55 7.62 -12.66 -0.10 9.46 16 8 O -0.55 -11.31 13.22 5.27 0.07 -11.24 16 9 N -0.71 -13.04 4.95 -61.49 -0.30 -13.35 16 10 C 0.13 2.84 4.50 -4.05 -0.02 2.83 16 11 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 12 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 13 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 14 C -0.51 -13.40 8.01 -34.44 -0.28 -13.67 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.89 -23.79 9.35 55.43 0.52 -23.27 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.09 -0.85 6.04 -27.49 -0.17 -1.02 16 23 C -0.11 -0.92 5.22 -26.64 -0.14 -1.06 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.12 2.03 4.79 -52.87 -0.25 1.78 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.12 1.41 7.96 -52.49 -0.42 0.99 16 33 H 0.40 6.63 6.15 -40.82 -0.25 6.38 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.01 0.13 6.86 -51.94 -0.36 -0.23 16 37 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 41 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 42 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 43 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -27.86 351.63 -8.93 -36.79 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.14 Total: 5.16 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -1.35 Total: -15.23 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.21 Total: -36.62 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.86 -8.93 -36.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.492 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds