Wall clock time and date at job start Tue Mar 31 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52957 * 109.35178 * 2 1 4 4 C 1.53234 * 109.40348 * 183.67047 * 3 2 1 5 5 C 1.51277 * 108.53194 * 305.37110 * 4 3 2 6 6 C 1.32998 * 120.84605 * 231.36902 * 5 4 3 7 7 C 1.47096 * 119.99901 * 347.79529 * 6 5 4 8 8 O 1.21614 * 120.00613 * 353.02012 * 7 6 5 9 9 N 1.34786 * 119.99729 * 173.01945 * 7 6 5 10 10 C 1.46496 * 120.00086 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47056 * 300.00520 * 11 10 9 13 13 C 1.52999 * 109.47105 * 60.00016 * 11 10 9 14 14 C 1.50698 * 109.47064 * 180.02562 * 11 10 9 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99845 * 179.97438 * 14 11 10 17 17 N 1.31518 * 120.00131 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99976 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47063 * 60.00655 * 18 16 14 20 20 H 1.48502 * 109.47188 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47492 * 300.00103 * 18 16 14 22 22 C 1.51268 * 118.30043 * 51.34538 * 5 4 3 23 23 C 1.52958 * 109.41062 * 120.31448 * 2 1 3 24 24 H 1.09000 * 109.47274 * 299.82827 * 1 2 3 25 25 H 1.09005 * 109.47301 * 59.82737 * 1 2 3 26 26 H 1.08993 * 109.47237 * 179.82250 * 1 2 3 27 27 H 1.08999 * 109.41311 * 240.17468 * 2 1 3 28 28 H 1.09007 * 109.48429 * 303.64213 * 3 2 1 29 29 H 1.08994 * 109.48828 * 63.68904 * 3 2 1 30 30 H 1.08999 * 109.63079 * 185.65991 * 4 3 2 31 31 H 1.09000 * 109.78683 * 65.17668 * 4 3 2 32 32 H 1.07997 * 119.99606 * 167.79678 * 6 5 4 33 33 H 0.96998 * 119.99738 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47186 * 300.00617 * 10 9 7 35 35 H 1.09005 * 109.46676 * 60.00323 * 10 9 7 36 36 H 1.08989 * 109.47292 * 59.99726 * 12 11 10 37 37 H 1.09000 * 109.47180 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47127 * 299.99358 * 12 11 10 39 39 H 1.09003 * 109.47079 * 60.00322 * 13 11 10 40 40 H 1.08996 * 109.47213 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.46980 * 300.00401 * 13 11 10 42 42 H 0.96998 * 120.00274 * 179.97438 * 17 16 14 43 43 H 1.08994 * 109.62580 * 188.93316 * 22 5 4 44 44 H 1.09000 * 109.61850 * 68.36781 * 22 5 4 45 45 H 1.08994 * 109.48408 * 296.34705 * 23 2 1 46 46 H 1.08998 * 109.48331 * 56.38945 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0369 1.4432 0.0000 4 6 3.5664 1.4455 -0.0925 5 6 4.1172 0.5913 1.0280 6 6 5.0600 1.0586 1.8414 7 6 5.7703 2.3023 1.5062 8 8 5.5881 2.8352 0.4283 9 7 6.6232 2.8514 2.3938 10 6 7.3312 4.0897 2.0598 11 6 8.2287 4.4957 3.2304 12 6 7.3706 4.7191 4.4773 13 6 9.2449 3.3849 3.5030 14 6 8.9564 5.7699 2.8871 15 1 8.7946 6.2430 1.9298 16 6 9.8280 6.3322 3.7954 17 7 10.0247 5.7563 4.9614 18 14 10.7307 7.9112 3.3696 19 1 9.7443 8.9891 3.1044 20 1 11.6017 8.3053 4.5059 21 1 11.5640 7.6942 2.1598 22 6 3.5679 -0.8076 1.1998 23 6 2.0384 -0.7282 1.2454 24 1 -0.3634 0.5112 0.8915 25 1 -0.3634 0.5165 -0.8885 26 1 -0.3633 -1.0276 -0.0032 27 1 1.8923 -0.5113 -0.8919 28 1 1.6202 1.9749 -0.8555 29 1 1.7277 1.9371 0.9211 30 1 3.9378 2.4653 0.0081 31 1 3.8786 1.0353 -1.0529 32 1 5.3039 0.5249 2.7480 33 1 6.7683 2.4266 3.2536 34 1 7.9420 3.9306 1.1711 35 1 6.6071 4.8811 1.8660 36 1 6.8440 3.7978 4.7258 37 1 8.0100 5.0088 5.3112 38 1 6.6466 5.5105 4.2832 39 1 9.8563 3.2258 2.6147 40 1 9.8846 3.6744 4.3367 41 1 8.7182 2.4636 3.7515 42 1 10.6381 6.1516 5.6003 43 1 3.9402 -1.2353 2.1306 44 1 3.8774 -1.4281 0.3589 45 1 1.7291 -0.1828 2.1370 46 1 1.6227 -1.7354 1.2726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837889220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:15 Heat of formation + Delta-G solvation = -65.156736 kcal Electronic energy + Delta-G solvation = -22110.763194 eV Core-core repulsion = 18998.841060 eV Total energy + Delta-G solvation = -3111.922134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.02449 -39.37687 -38.05882 -35.00768 -34.55118 -32.76064 -31.89367 -29.98598 -27.57488 -27.52106 -26.94963 -25.07214 -23.91008 -22.17985 -21.14047 -20.63043 -19.57953 -18.18697 -17.56357 -16.85203 -16.45752 -16.29973 -15.58669 -15.33686 -15.18318 -14.91531 -14.80348 -14.70034 -14.19932 -14.05551 -13.76687 -13.33503 -13.28651 -13.13806 -13.08668 -12.68097 -12.62698 -12.52578 -12.39995 -12.25811 -12.13920 -11.93205 -11.69576 -11.49355 -11.44930 -11.19487 -11.09181 -10.73000 -10.42169 -10.35048 -9.95890 -9.71061 -8.02926 -6.19028 0.44642 1.43524 1.44347 1.51252 2.37460 2.38596 2.55170 3.20362 3.73391 3.81323 3.94852 4.04745 4.12354 4.34221 4.44650 4.46985 4.51014 4.52983 4.57667 4.70712 4.74197 4.82212 4.90529 4.98144 4.99874 5.04991 5.05954 5.10826 5.14793 5.18556 5.21044 5.27541 5.28738 5.40069 5.40591 5.52791 5.60734 5.65925 5.66077 5.68940 5.81410 6.13946 6.20854 6.42786 6.76331 6.85085 7.40758 7.48651 8.95923 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.040293 B = 0.003074 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.737795 B = 9106.797730 C = 9373.124854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.107 4.107 4 C -0.125 4.125 5 C -0.017 4.017 6 C -0.242 4.242 7 C 0.531 3.469 8 O -0.586 6.586 9 N -0.709 5.709 10 C 0.149 3.851 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.532 4.532 15 H 0.044 0.956 16 C 0.028 3.972 17 N -0.900 5.900 18 Si 0.946 3.054 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.277 1.277 22 C -0.089 4.089 23 C -0.108 4.108 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.408 0.592 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.261 0.739 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.881 -15.445 -4.486 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.144 4.144 4 C -0.162 4.162 5 C -0.019 4.019 6 C -0.262 4.262 7 C 0.322 3.678 8 O -0.470 6.470 9 N -0.359 5.359 10 C 0.025 3.975 11 C 0.052 3.948 12 C -0.178 4.178 13 C -0.179 4.179 14 C -0.570 4.570 15 H 0.062 0.938 16 C -0.171 4.171 17 N -0.538 5.538 18 Si 0.772 3.228 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.203 1.203 22 C -0.126 4.126 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.245 0.755 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.872 -15.023 -5.029 22.425 hybrid contribution 0.997 1.223 0.163 1.587 sum -14.875 -13.799 -4.865 20.865 Atomic orbital electron populations 1.21814 0.94316 1.02323 1.01786 1.21170 0.96181 0.94988 0.98922 1.21625 0.93526 0.97547 1.01716 1.21499 0.95959 1.01959 0.96736 1.22982 0.90477 0.95732 0.92699 1.22406 1.02470 0.97534 1.03809 1.19262 0.79576 0.85256 0.83659 1.90577 1.65508 1.65760 1.25200 1.46091 1.43866 1.26378 1.19557 1.21231 0.93606 0.84424 0.98248 1.18336 0.91716 0.93939 0.90843 1.21672 0.97879 0.97738 1.00554 1.21677 0.99539 0.96077 1.00612 1.21263 1.25359 1.08920 1.01470 0.93806 1.25462 0.97063 0.99673 0.94950 1.69900 1.36605 1.40105 1.07198 0.85813 0.78641 0.80688 0.77649 1.20248 1.20682 1.20259 1.21039 0.96426 0.91013 1.04092 1.21633 0.93620 1.01545 0.97789 0.92890 0.92696 0.91523 0.90821 0.91548 0.92794 0.89391 0.91028 0.83054 0.75539 0.94570 0.94593 0.94480 0.91799 0.96426 0.96378 0.91803 0.94425 0.92968 0.89139 0.88733 0.92047 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.18 71.98 0.66 -1.12 16 2 C -0.09 -1.39 2.62 -10.82 -0.03 -1.42 16 3 C -0.11 -2.15 5.21 30.66 0.16 -1.99 16 4 C -0.12 -3.23 5.29 30.11 0.16 -3.07 16 5 C -0.02 -0.39 5.39 -17.25 -0.09 -0.48 16 6 C -0.24 -6.30 9.66 23.43 0.23 -6.07 16 7 C 0.53 18.87 7.62 86.57 0.66 19.53 16 8 O -0.59 -24.77 13.22 -4.07 -0.05 -24.83 16 9 N -0.71 -25.71 4.95 -466.71 -2.31 -28.02 16 10 C 0.15 6.58 4.50 86.38 0.39 6.97 16 11 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 12 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 13 C -0.12 -5.51 8.08 71.98 0.58 -4.92 16 14 C -0.53 -28.69 8.01 25.60 0.21 -28.49 16 15 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 16 C 0.03 1.51 5.15 84.65 0.44 1.95 16 17 N -0.90 -48.51 9.35 21.45 0.20 -48.31 16 18 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 C -0.09 -1.33 6.04 30.10 0.18 -1.15 16 23 C -0.11 -1.42 5.22 30.66 0.16 -1.26 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 3.00 4.79 -17.29 -0.08 2.91 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.15 3.01 7.96 -2.91 -0.02 2.98 16 33 H 0.41 12.93 6.15 -92.71 -0.57 12.36 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 37 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 41 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 42 H 0.26 13.55 8.31 -92.71 -0.77 12.77 16 43 H 0.09 1.10 7.92 -2.39 -0.02 1.08 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -61.21 351.63 4.41 -56.80 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.30 Total: 23.23 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.25 Total: -23.97 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.11 Total: -76.34 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -61.21 4.41 -56.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.361 kcal (2) G-P(sol) polarization free energy of solvation -61.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds