Wall clock time and date at job start Tue Mar 31 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 119.99802 * 2 1 4 4 C 1.50699 * 120.00313 * 5.27173 * 3 2 1 5 5 C 1.52995 * 109.47341 * 245.11576 * 4 3 2 6 6 C 1.53000 * 109.47024 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47311 * 60.00292 * 6 5 4 8 8 C 1.53000 * 109.47311 * 179.97438 * 7 6 5 9 9 C 1.53008 * 109.46997 * 299.99582 * 7 6 5 10 10 C 1.53000 * 109.46748 * 60.00074 * 9 7 6 11 11 C 1.47104 * 120.00047 * 179.97438 * 2 1 3 12 12 O 1.21615 * 119.99908 * 180.02562 * 11 2 1 13 13 N 1.34776 * 120.00079 * 0.02562 * 11 2 1 14 14 C 1.46499 * 119.99922 * 179.97438 * 13 11 2 15 15 H 1.08994 * 109.47406 * 35.00635 * 14 13 11 16 16 C 1.52997 * 109.47348 * 275.00062 * 14 13 11 17 17 C 1.50701 * 109.46799 * 155.00114 * 14 13 11 18 18 H 1.07997 * 120.00303 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99761 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00263 * 359.97438 * 19 17 14 21 21 Si 1.86810 * 119.99924 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.46710 * 269.99745 * 21 19 17 23 23 H 1.48500 * 109.47099 * 29.99522 * 21 19 17 24 24 H 1.48497 * 109.47245 * 149.99790 * 21 19 17 25 25 H 1.09001 * 109.47060 * 174.77056 * 1 2 3 26 26 H 1.08996 * 109.47323 * 294.76834 * 1 2 3 27 27 H 1.09000 * 109.46964 * 54.77387 * 1 2 3 28 28 H 1.08004 * 119.99592 * 185.26868 * 3 2 1 29 29 H 1.09004 * 109.46834 * 5.12060 * 4 3 2 30 30 H 1.08997 * 109.47009 * 299.99672 * 5 4 3 31 31 H 1.08999 * 109.46990 * 59.99726 * 5 4 3 32 32 H 1.08997 * 109.47061 * 299.99763 * 6 5 4 33 33 H 1.09009 * 109.46847 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47278 * 59.99226 * 7 6 5 35 35 H 1.08999 * 109.47360 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.47097 * 300.00328 * 8 7 6 37 37 H 1.08997 * 109.47061 * 59.99471 * 8 7 6 38 38 H 1.08997 * 109.47125 * 300.00375 * 9 7 6 39 39 H 1.08997 * 109.47159 * 179.97438 * 9 7 6 40 40 H 1.08997 * 109.47233 * 179.97438 * 10 9 7 41 41 H 1.09008 * 109.47546 * 60.00169 * 10 9 7 42 42 H 0.97002 * 119.99927 * 0.02562 * 13 11 2 43 43 H 1.08998 * 109.47208 * 59.99861 * 16 14 13 44 44 H 1.09002 * 109.46999 * 180.02562 * 16 14 13 45 45 H 1.08998 * 109.47109 * 299.99890 * 16 14 13 46 46 H 0.96995 * 120.00234 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4232 2.4541 0.1199 5 6 1.5903 3.2591 -1.1704 6 6 0.8296 4.5810 -1.0488 7 6 1.3866 5.3836 0.1286 8 6 0.6264 6.7058 0.2498 9 6 1.2196 4.5786 1.4191 10 6 1.9802 3.2567 1.2975 11 6 2.2425 -1.2739 0.0006 12 8 3.4587 -1.2739 0.0010 13 7 1.5687 -2.4412 0.0006 14 6 2.3012 -3.7098 0.0006 15 1 3.2118 -3.6037 0.5901 16 6 2.6651 -4.0887 -1.4364 17 6 1.4372 -4.7887 0.6010 18 1 0.4421 -4.5529 0.9483 19 6 1.9174 -6.0767 0.7080 20 7 3.1293 -6.3639 0.2856 21 14 0.8461 -7.4143 1.4516 22 1 1.0738 -7.4726 2.9180 23 1 -0.5826 -7.1100 1.1842 24 1 1.1956 -8.7234 0.8440 25 1 -0.3633 -1.0234 -0.0937 26 1 -0.3634 0.4305 0.9331 27 1 -0.3633 0.5928 -0.8395 28 1 3.2485 1.1537 -0.0859 29 1 0.3654 2.2510 0.2872 30 1 2.6480 3.4622 -1.3375 31 1 1.1930 2.6875 -2.0092 32 1 -0.2281 4.3775 -0.8819 33 1 0.9482 5.1544 -1.9683 34 1 2.4444 5.5870 -0.0383 35 1 1.0229 7.2774 1.0889 36 1 0.7457 7.2791 -0.6696 37 1 -0.4315 6.5027 0.4165 38 1 0.1618 4.3751 1.5860 39 1 1.6168 5.1501 2.2578 40 1 1.8616 2.6833 2.2169 41 1 3.0381 3.4601 1.1305 42 1 0.5987 -2.4412 -0.0002 43 1 3.2900 -3.3083 -1.8707 44 1 3.2098 -5.0329 -1.4364 45 1 1.7545 -4.1950 -2.0258 46 1 3.4670 -7.2701 0.3605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865054457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:12 Heat of formation + Delta-G solvation = -65.921901 kcal Electronic energy + Delta-G solvation = -21890.228375 eV Core-core repulsion = 18778.273061 eV Total energy + Delta-G solvation = -3111.955314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -39.51732 -38.67114 -35.32228 -34.63580 -32.58382 -31.81753 -30.93571 -28.90090 -27.47322 -25.81746 -25.22882 -22.88493 -22.80490 -21.10961 -19.99062 -19.65328 -18.33353 -16.88733 -15.89570 -15.41255 -15.15843 -14.58809 -14.50348 -14.42947 -14.24527 -13.91823 -13.62230 -13.19573 -12.83855 -12.62844 -12.44949 -12.35030 -12.31268 -11.88233 -11.81942 -11.67742 -11.40318 -11.27964 -11.05579 -10.96479 -10.90241 -10.70781 -10.53769 -10.31658 -10.28134 -10.25603 -10.21125 -9.04368 -8.96653 -8.74568 -8.52305 -7.83524 -6.10162 -4.19370 1.77496 3.25739 3.32099 3.34119 4.00942 4.12558 4.37492 4.48907 4.52085 4.60277 4.87540 5.04257 5.12010 5.19519 5.22069 5.26365 5.32539 5.35572 5.38618 5.43725 5.46099 5.60700 5.68843 5.69292 5.73474 5.81633 5.87440 5.91949 5.99826 6.05350 6.07079 6.14389 6.21253 6.32066 6.70508 6.80363 6.88676 7.00784 7.18892 7.50877 7.61089 7.73615 7.95451 8.17897 8.72708 8.81683 9.19282 9.48415 10.95904 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.040322 B = 0.002945 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.237943 B = 9506.002796 C = 9712.491318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.170 4.170 3 C -0.088 4.088 4 C -0.063 4.063 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.094 4.094 8 C -0.148 4.148 9 C -0.113 4.113 10 C -0.111 4.111 11 C 0.536 3.464 12 O -0.560 6.560 13 N -0.704 5.704 14 C 0.263 3.737 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.533 4.533 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.274 1.274 24 H -0.285 1.285 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.388 0.612 43 H 0.014 0.986 44 H 0.090 0.910 45 H 0.026 0.974 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 22.008 -0.960 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.173 4.173 3 C -0.108 4.108 4 C -0.082 4.082 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.113 4.113 8 C -0.205 4.205 9 C -0.150 4.150 10 C -0.149 4.149 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.352 5.352 14 C 0.161 3.839 15 H 0.066 0.934 16 C -0.205 4.205 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.199 1.199 24 H -0.211 1.211 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.223 0.777 43 H 0.034 0.966 44 H 0.109 0.891 45 H 0.045 0.955 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.062 21.776 -0.978 22.625 hybrid contribution -0.956 -0.887 0.367 1.355 sum -7.019 20.889 -0.610 22.045 Atomic orbital electron populations 1.20802 0.91757 1.02713 1.01952 1.21705 0.96096 0.93991 1.05551 1.23390 1.00440 0.92460 0.94523 1.20412 0.99954 0.92333 0.95466 1.21524 1.00951 0.95421 0.96947 1.21594 0.99804 0.95820 0.97813 1.21163 1.00084 0.94704 0.95304 1.21838 1.00340 0.96893 1.01425 1.21591 1.00600 0.95792 0.97031 1.21532 1.00023 0.95423 0.97902 1.18339 0.87450 0.84375 0.77559 1.90726 1.13670 1.87865 1.51816 1.46533 1.10039 1.06937 1.71693 1.18745 0.92953 0.78205 0.93983 0.93386 1.22069 0.99115 1.01940 0.97371 1.21222 1.01134 0.93452 1.41339 0.92128 1.24897 0.95174 0.98492 0.95191 1.69905 1.15954 1.20385 1.45866 0.86446 0.80454 0.80903 0.79272 1.20563 1.19854 1.21063 0.91614 0.91298 0.91370 0.85898 0.90063 0.91697 0.91741 0.91991 0.92071 0.91249 0.92845 0.92854 0.92777 0.91987 0.92037 0.91665 0.91686 0.77742 0.96648 0.89143 0.95504 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.51 36.01 0.31 -1.11 16 2 C -0.17 -2.72 5.99 -102.85 -0.62 -3.33 16 3 C -0.09 -1.25 8.34 -36.13 -0.30 -1.55 16 4 C -0.06 -0.66 2.25 -91.77 -0.21 -0.87 16 5 C -0.11 -1.04 5.19 -26.73 -0.14 -1.18 16 6 C -0.11 -0.88 5.20 -26.73 -0.14 -1.02 16 7 C -0.09 -0.71 2.72 -90.62 -0.25 -0.95 16 8 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 9 C -0.11 -0.90 5.21 -26.73 -0.14 -1.04 16 10 C -0.11 -1.07 5.19 -26.73 -0.14 -1.21 16 11 C 0.54 11.46 7.71 -12.66 -0.10 11.36 16 12 O -0.56 -14.16 15.89 5.26 0.08 -14.08 16 13 N -0.70 -15.46 5.03 -56.12 -0.28 -15.74 16 14 C 0.26 6.93 2.56 -69.08 -0.18 6.76 16 15 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 17 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -25.29 11.32 55.43 0.63 -24.67 16 21 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.06 0.82 5.87 -51.93 -0.30 0.52 16 26 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 27 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 28 H 0.12 1.94 7.51 -52.48 -0.39 1.54 16 29 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.39 7.42 6.28 -40.82 -0.26 7.16 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -30.77 359.28 -9.02 -39.79 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.24 Total: 4.65 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.60 Total: -11.22 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.35 Total: -40.41 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.77 -9.02 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865054457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.133 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds