Wall clock time and date at job start Tue Mar 31 2020 01:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48506 * 109.46997 * 240.00133 * 3 2 1 5 5 H 1.48503 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47458 * 120.00050 * 3 2 1 7 7 C 1.37879 * 120.00485 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99845 * 175.76453 * 7 2 1 9 9 C 1.50699 * 119.99517 * 355.76315 * 7 2 1 10 10 C 1.53000 * 115.54934 * 278.71217 * 9 7 2 11 11 N 1.46901 * 109.47073 * 304.25250 * 10 9 7 12 12 C 1.46904 * 110.99526 * 185.65175 * 11 10 9 13 13 H 1.08999 * 109.47433 * 3.70629 * 12 11 10 14 14 C 1.53002 * 109.47121 * 123.71456 * 12 11 10 15 15 C 1.53777 * 113.61362 * 36.48562 * 14 12 11 16 16 C 1.53957 * 87.01894 * 220.04915 * 15 14 12 17 17 C 1.53773 * 113.61124 * 298.87320 * 14 12 11 18 18 C 1.53003 * 109.46798 * 243.71202 * 12 11 10 19 19 H 1.09003 * 109.87120 * 299.30202 * 18 12 11 20 20 C 1.54101 * 109.87844 * 60.30784 * 18 12 11 21 21 C 1.54811 * 104.18714 * 121.45609 * 20 18 12 22 22 C 1.54988 * 102.09285 * 20.88066 * 21 20 18 23 23 O 1.43739 * 109.88028 * 178.29202 * 18 12 11 24 24 C 1.53001 * 117.49578 * 133.00553 * 9 7 2 25 25 C 1.52998 * 117.49769 * 64.38554 * 9 7 2 26 26 H 0.96999 * 119.99771 * 185.43377 * 1 2 3 27 27 H 1.08993 * 109.46919 * 64.25820 * 10 9 7 28 28 H 1.09002 * 109.46784 * 184.25214 * 10 9 7 29 29 H 1.00890 * 110.99906 * 61.70201 * 11 10 9 30 30 H 1.09004 * 112.84797 * 167.68011 * 14 12 11 31 31 H 1.09004 * 113.61531 * 334.56359 * 15 14 12 32 32 H 1.08997 * 113.61445 * 105.47458 * 15 14 12 33 33 H 1.09004 * 113.53569 * 270.81585 * 16 15 14 34 34 H 1.08991 * 113.67346 * 139.93275 * 16 15 14 35 35 H 1.08997 * 113.61925 * 254.52983 * 17 14 12 36 36 H 1.09004 * 113.61687 * 25.35225 * 17 14 12 37 37 H 1.09000 * 110.48644 * 240.12893 * 20 18 12 38 38 H 1.08997 * 110.49258 * 2.77631 * 20 18 12 39 39 H 1.09006 * 110.90495 * 139.07789 * 21 20 18 40 40 H 1.08995 * 110.90337 * 262.64122 * 21 20 18 41 41 H 1.08997 * 110.62364 * 81.47925 * 22 21 20 42 42 H 1.09002 * 110.61848 * 204.31814 * 22 21 20 43 43 H 1.09002 * 117.50147 * 0.02562 * 24 9 7 44 44 H 1.09004 * 117.50021 * 145.01625 * 24 9 7 45 45 H 1.08995 * 117.49716 * 214.97368 * 25 9 7 46 46 H 1.08999 * 117.50039 * 359.97197 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0824 -1.1952 -0.0685 9 6 1.2543 -2.4973 0.0975 10 6 0.8321 -2.9122 1.5084 11 7 2.0142 -2.9590 2.3793 12 6 1.6689 -3.4827 3.7077 13 1 0.6201 -3.7793 3.7200 14 6 2.5460 -4.6965 4.0211 15 6 3.9838 -4.5711 3.4902 16 6 3.8865 -6.0592 3.1073 17 6 2.3634 -5.8601 3.0325 18 6 1.9044 -2.3978 4.7606 19 1 2.9543 -2.1050 4.7624 20 6 1.0193 -1.1731 4.4580 21 6 0.1581 -1.0031 5.7332 22 6 0.9939 -1.7643 6.7934 23 8 1.5314 -2.8880 6.0593 24 6 1.6396 -3.6088 -0.8807 25 6 0.3168 -2.8602 -1.0558 26 1 -0.4850 -0.8363 0.0795 27 1 0.1191 -2.1879 1.9021 28 1 0.3673 -3.8975 1.4735 29 1 2.4472 -2.0505 2.4502 30 1 2.4916 -4.9994 5.0668 31 1 4.0760 -3.9048 2.6325 32 1 4.7200 -4.3666 4.2675 33 1 4.2000 -6.7348 3.9032 34 1 4.3438 -6.2946 2.1464 35 1 1.7935 -6.6947 3.4408 36 1 2.0104 -5.5470 2.0499 37 1 1.6350 -0.2890 4.2928 38 1 0.3854 -1.3649 3.5923 39 1 0.0594 0.0497 5.9983 40 1 -0.8214 -1.4635 5.6052 41 1 1.7994 -1.1349 7.1716 42 1 0.3585 -2.1049 7.6109 43 1 2.4361 -3.3975 -1.5942 44 1 1.5926 -4.6361 -0.5193 45 1 -0.6005 -3.3950 -0.8096 46 1 0.2424 -2.1561 -1.8846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866350419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:42 Heat of formation + Delta-G solvation = -12.615177 kcal Electronic energy + Delta-G solvation = -23642.175497 eV Core-core repulsion = 20532.531737 eV Total energy + Delta-G solvation = -3109.643761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -39.85263 -38.14281 -36.99342 -34.25898 -31.87149 -31.76217 -29.67171 -26.84857 -25.22960 -25.01509 -24.08677 -22.62562 -21.60371 -21.15775 -20.28989 -19.31821 -18.54396 -16.59315 -16.37233 -16.12727 -15.37594 -14.88713 -14.58754 -14.03400 -13.92756 -13.76235 -13.42215 -13.33580 -12.65948 -12.50193 -12.10060 -11.88203 -11.81694 -11.67205 -11.51032 -11.32371 -11.08239 -10.91069 -10.87758 -10.71651 -10.45945 -10.33793 -10.15652 -9.99430 -9.81636 -9.73897 -9.45118 -9.31974 -8.61122 -8.42661 -8.18117 -7.56010 -6.33267 -4.07904 3.38849 3.41077 3.59257 3.94515 4.48108 4.70424 4.72105 4.90978 5.02864 5.08288 5.17775 5.20184 5.27584 5.34448 5.37744 5.39857 5.47877 5.69180 5.71820 5.77875 5.91373 5.96402 5.99028 6.09682 6.13221 6.15655 6.18359 6.28714 6.31178 6.31417 6.35654 6.41456 6.54835 6.60056 6.67513 6.72730 6.78292 6.95492 7.04563 7.10722 7.28958 7.34709 7.91021 8.20215 8.32580 8.45317 8.89747 9.66211 11.04437 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.007428 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.969740 B = 3768.382795 C = 5073.810875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 1.060 2.940 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.564 4.564 8 H 0.052 0.948 9 C 0.031 3.969 10 C 0.103 3.897 11 N -0.658 5.658 12 C 0.098 3.902 13 H 0.062 0.938 14 C -0.096 4.096 15 C -0.126 4.126 16 C -0.142 4.142 17 C -0.128 4.128 18 C 0.065 3.935 19 H 0.069 0.931 20 C -0.159 4.159 21 C -0.152 4.152 22 C 0.046 3.954 23 O -0.373 6.373 24 C -0.185 4.185 25 C -0.188 4.188 26 H 0.275 0.725 27 H 0.024 0.976 28 H 0.041 0.959 29 H 0.351 0.649 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -5.385 10.663 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.889 3.111 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.602 4.602 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.027 4.027 11 N -0.291 5.291 12 C -0.013 4.013 13 H 0.080 0.920 14 C -0.115 4.115 15 C -0.164 4.164 16 C -0.180 4.180 17 C -0.165 4.165 18 C 0.006 3.994 19 H 0.087 0.913 20 C -0.196 4.196 21 C -0.190 4.190 22 C -0.031 4.031 23 O -0.291 6.291 24 C -0.223 4.223 25 C -0.226 4.226 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.172 0.828 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.687 -4.545 10.430 11.690 hybrid contribution -0.394 -0.663 0.323 0.836 sum 2.293 -5.208 10.753 12.166 Atomic orbital electron populations 1.70724 1.06752 1.31572 1.45247 1.25688 0.96564 1.02004 0.93710 0.83661 0.74980 0.75809 0.76624 1.21557 1.20999 1.21441 1.21261 0.93850 0.89638 1.55476 0.92934 1.19019 0.97668 0.94176 0.86087 1.21608 0.90152 0.96917 0.93979 1.60460 1.27954 1.32700 1.07953 1.21508 0.98379 0.93521 0.87920 0.92010 1.22508 0.96136 0.94849 0.97988 1.22893 0.95451 0.96526 1.01489 1.22762 0.97122 0.97420 1.00650 1.22820 0.95785 0.97180 1.00738 1.23343 0.98177 0.93975 0.83921 0.91312 1.23096 0.98970 0.98466 0.99097 1.23081 0.99569 1.01118 0.95238 1.23529 0.96154 0.88343 0.95034 1.88888 1.82588 1.32174 1.25482 1.22735 0.98200 0.95784 1.05539 1.22791 0.92146 1.03506 1.04196 0.91366 0.95782 0.94090 0.82816 0.89849 0.87785 0.93363 0.91546 0.92087 0.93204 0.89267 0.90477 0.89523 0.90461 0.90803 0.92539 0.89468 0.90674 0.91599 0.91991 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.56 13.54 55.43 0.75 -24.81 16 2 C 0.03 0.69 5.44 -17.82 -0.10 0.59 16 3 Si 1.06 23.96 29.91 -169.99 -5.08 18.88 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.56 -14.62 7.97 -34.44 -0.27 -14.89 16 8 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 9 C 0.03 0.73 1.23 -155.66 -0.19 0.54 16 10 C 0.10 2.13 5.05 -3.82 -0.02 2.11 16 11 N -0.66 -12.07 4.01 -106.72 -0.43 -12.49 16 12 C 0.10 1.58 1.86 -67.71 -0.13 1.46 16 13 H 0.06 1.08 7.51 -51.93 -0.39 0.69 16 14 C -0.10 -1.44 3.49 -89.81 -0.31 -1.76 16 15 C -0.13 -1.87 7.48 -25.83 -0.19 -2.06 16 16 C -0.14 -1.95 8.09 -25.82 -0.21 -2.16 16 17 C -0.13 -1.90 7.54 -25.92 -0.20 -2.09 16 18 C 0.06 0.99 2.80 -26.15 -0.07 0.92 16 19 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 20 C -0.16 -2.47 5.96 -25.20 -0.15 -2.62 16 21 C -0.15 -1.96 7.16 -24.73 -0.18 -2.14 16 22 C 0.05 0.56 7.72 38.21 0.29 0.86 16 23 O -0.37 -5.64 10.57 -35.23 -0.37 -6.01 16 24 C -0.19 -4.03 9.93 -26.73 -0.27 -4.29 16 25 C -0.19 -4.31 8.58 -26.73 -0.23 -4.54 16 26 H 0.27 7.72 6.21 -40.82 -0.25 7.46 16 27 H 0.02 0.54 6.28 -51.93 -0.33 0.22 16 28 H 0.04 0.82 8.02 -51.93 -0.42 0.41 16 29 H 0.35 6.95 6.95 -39.30 -0.27 6.67 16 30 H 0.08 1.27 7.65 -51.93 -0.40 0.87 16 31 H 0.10 1.74 6.84 -51.93 -0.36 1.38 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.49 7.75 -51.93 -0.40 1.09 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.57 5.61 -51.93 -0.29 1.28 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -26.74 354.26 -10.24 -36.99 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -8.23 Total: 12.19 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -2.22 Total: -30.07 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.32 Total: -37.30 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.37 Total: -6.01 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.08 Total: 18.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.74 -10.24 -36.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866350419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.370 kcal (2) G-P(sol) polarization free energy of solvation -26.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds