Wall clock time and date at job start Tue Mar 31 2020 01:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47240 * 240.00199 * 3 2 1 5 5 H 1.48502 * 109.47342 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46776 * 120.00293 * 3 2 1 7 7 C 1.37879 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00030 * 181.81808 * 7 2 1 9 9 C 1.50700 * 119.99696 * 1.81769 * 7 2 1 10 10 C 1.52998 * 115.54932 * 84.54997 * 9 7 2 11 11 N 1.46907 * 109.47296 * 67.39551 * 10 9 7 12 12 C 1.46904 * 111.00024 * 186.29377 * 11 10 9 13 13 H 1.08999 * 109.46583 * 355.30639 * 12 11 10 14 14 C 1.52997 * 109.46824 * 235.30907 * 12 11 10 15 15 C 1.53782 * 113.61251 * 163.37509 * 14 12 11 16 16 C 1.53788 * 87.07964 * 220.01717 * 15 14 12 17 17 C 1.53776 * 87.08093 * 25.43434 * 16 15 14 18 18 C 1.52997 * 109.46840 * 115.30758 * 12 11 10 19 19 H 1.09005 * 110.41697 * 182.68630 * 18 12 11 20 20 C 1.54472 * 110.37427 * 305.00017 * 18 12 11 21 21 C 1.54509 * 104.06262 * 142.81255 * 20 18 12 22 22 C 1.54471 * 104.18661 * 359.92982 * 21 20 18 23 23 O 1.44424 * 110.37145 * 60.38316 * 18 12 11 24 24 C 1.52998 * 117.49517 * 230.21318 * 9 7 2 25 25 C 1.52999 * 117.49970 * 298.87650 * 9 7 2 26 26 H 0.96997 * 119.99640 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47141 * 307.39573 * 10 9 7 28 28 H 1.08998 * 109.47294 * 187.39097 * 10 9 7 29 29 H 1.00900 * 110.99581 * 62.34139 * 11 10 9 30 30 H 1.09005 * 112.85342 * 294.68159 * 14 12 11 31 31 H 1.08993 * 113.61670 * 334.56670 * 15 14 12 32 32 H 1.09004 * 113.61332 * 105.47069 * 15 14 12 33 33 H 1.08992 * 113.61081 * 270.88126 * 16 15 14 34 34 H 1.08998 * 113.61009 * 139.98539 * 16 15 14 35 35 H 1.09001 * 113.61075 * 220.01856 * 17 16 15 36 36 H 1.08993 * 113.61916 * 89.11508 * 17 16 15 37 37 H 1.08993 * 110.51458 * 24.16844 * 20 18 12 38 38 H 1.09003 * 110.51252 * 261.45316 * 20 18 12 39 39 H 1.09006 * 110.51415 * 118.64396 * 21 20 18 40 40 H 1.09006 * 110.50942 * 241.21467 * 21 20 18 41 41 H 1.09003 * 110.37688 * 94.92305 * 22 21 20 42 42 H 1.08999 * 110.37865 * 217.25945 * 22 21 20 43 43 H 1.09002 * 117.49817 * 215.00100 * 24 9 7 44 44 H 1.08999 * 117.50320 * 0.03131 * 24 9 7 45 45 H 1.08995 * 117.49904 * 359.97438 * 25 9 7 46 46 H 1.08996 * 117.49682 * 144.97915 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0841 -1.1943 0.0291 9 6 1.2516 -2.4988 -0.0425 10 6 0.8461 -2.9821 -1.4364 11 7 2.0490 -3.3410 -2.1994 12 6 1.7116 -3.6677 -3.5914 13 1 0.6290 -3.6485 -3.7168 14 6 2.2396 -5.0632 -3.9300 15 6 1.6100 -5.6697 -5.1952 16 6 1.5810 -7.0105 -4.4427 17 6 1.5511 -6.1903 -3.1423 18 6 2.3517 -2.6394 -4.5261 19 1 2.0720 -2.8397 -5.5604 20 6 1.9298 -1.2094 -4.1221 21 6 3.1976 -0.3607 -4.3663 22 6 4.2383 -1.3763 -4.8875 23 8 3.7886 -2.6548 -4.3819 24 6 1.6219 -3.5617 0.9937 25 6 0.2985 -2.8020 1.1153 26 1 -0.4849 0.8400 0.0004 27 1 0.3106 -2.1869 -1.9551 28 1 0.2002 -3.8553 -1.3446 29 1 2.5428 -4.1026 -1.7588 30 1 3.3280 -5.1198 -3.9121 31 1 0.6198 -5.2750 -5.4224 32 1 2.2759 -5.6677 -6.0582 33 1 2.4892 -7.6003 -4.5662 34 1 0.6731 -7.5885 -4.6153 35 1 2.1694 -6.6086 -2.3480 36 1 0.5448 -5.9378 -2.8082 37 1 1.6458 -1.1777 -3.0703 38 1 1.1101 -0.8610 -4.7506 39 1 3.0048 0.4071 -5.1156 40 1 3.5390 0.0924 -3.4356 41 1 4.2496 -1.3827 -5.9775 42 1 5.2284 -1.1387 -4.4985 43 1 1.5765 -4.6054 0.6825 44 1 2.4098 -3.3172 1.7062 45 1 0.2164 -2.0580 1.9076 46 1 -0.6175 -3.3455 0.8840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866350421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:53 Heat of formation + Delta-G solvation = -5.815549 kcal Electronic energy + Delta-G solvation = -23636.272669 eV Core-core repulsion = 20526.923762 eV Total energy + Delta-G solvation = -3109.348907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.66068 -38.10457 -36.75776 -34.00824 -31.79443 -31.35973 -29.57151 -26.81603 -25.59122 -25.33771 -23.80725 -22.87074 -21.06772 -20.83108 -19.99236 -19.32727 -18.72756 -16.31126 -15.97190 -15.63279 -15.07021 -14.94843 -14.93116 -14.44563 -13.82280 -13.27152 -13.21876 -12.97958 -12.85341 -12.38963 -12.35173 -11.85984 -11.77792 -11.37092 -11.20988 -11.09168 -10.99807 -10.83369 -10.76609 -10.61312 -10.42302 -10.29735 -10.20044 -10.08359 -9.91813 -9.75967 -9.38199 -9.10661 -8.81209 -8.28664 -7.97423 -7.35168 -5.90346 -3.91841 3.37092 3.41376 3.45169 4.37631 4.50448 4.61205 4.71707 4.83516 4.92685 5.05280 5.30590 5.39192 5.39656 5.43906 5.49304 5.56570 5.65468 5.73092 5.76643 5.81820 5.87904 5.94076 6.00231 6.04309 6.08930 6.20667 6.24451 6.30115 6.36562 6.40420 6.44214 6.56708 6.60503 6.66566 6.69665 6.82214 6.93276 7.14074 7.20925 7.41051 7.57382 7.66567 8.01904 8.08700 8.30795 8.63438 9.07675 9.70626 11.18851 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.007224 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.115131 B = 3875.136388 C = 5242.284877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.463 4.463 8 H 0.058 0.942 9 C 0.055 3.945 10 C 0.107 3.893 11 N -0.652 5.652 12 C 0.104 3.896 13 H 0.062 0.938 14 C -0.117 4.117 15 C -0.135 4.135 16 C -0.140 4.140 17 C -0.140 4.140 18 C 0.094 3.906 19 H 0.051 0.949 20 C -0.151 4.151 21 C -0.149 4.149 22 C 0.049 3.951 23 O -0.357 6.357 24 C -0.215 4.215 25 C -0.157 4.157 26 H 0.256 0.744 27 H 0.072 0.928 28 H -0.007 1.007 29 H 0.334 0.666 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -8.005 -10.462 13.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.711 3.289 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.022 4.022 11 N -0.282 5.282 12 C -0.007 4.007 13 H 0.080 0.920 14 C -0.136 4.136 15 C -0.173 4.173 16 C -0.178 4.178 17 C -0.178 4.178 18 C 0.035 3.965 19 H 0.068 0.932 20 C -0.189 4.189 21 C -0.187 4.187 22 C -0.028 4.028 23 O -0.275 6.275 24 C -0.253 4.253 25 C -0.195 4.195 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.011 0.989 29 H 0.152 0.848 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.741 -7.381 -10.505 13.128 hybrid contribution -0.181 0.374 0.004 0.416 sum 2.560 -7.006 -10.501 12.881 Atomic orbital electron populations 1.70000 1.05673 1.26047 1.50889 1.24900 0.94695 0.98453 0.95305 0.86816 0.79690 0.83726 0.78646 1.20136 1.21663 1.20556 1.20276 0.92290 0.88289 1.49272 0.92410 1.18791 0.97244 0.93044 0.85538 1.21684 0.88951 0.96052 0.95479 1.60193 1.24570 1.43795 0.99607 1.21542 0.96992 0.91187 0.90957 0.91957 1.22947 1.00891 0.93678 0.96066 1.22903 1.00881 0.96405 0.97083 1.22771 1.01547 0.96373 0.97091 1.22943 1.01070 0.97070 0.96679 1.22948 0.81691 0.95687 0.96129 0.93152 1.23009 0.96614 0.93518 1.05754 1.22827 0.96085 0.98155 1.01606 1.23290 0.98449 0.84280 0.96810 1.89134 1.20003 1.34170 1.84241 1.22961 0.99781 0.95521 1.07005 1.22508 0.90912 1.01577 1.04493 0.93384 0.90967 0.98928 0.84782 0.88254 0.90435 0.91772 0.90474 0.91922 0.91592 0.90397 0.86683 0.92681 0.92162 0.90447 0.93713 0.89969 0.92314 0.90693 0.89986 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 12.74 55.43 0.71 -24.08 16 2 C 0.07 1.83 5.43 -17.82 -0.10 1.73 16 3 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.46 -12.40 8.78 -34.44 -0.30 -12.70 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.05 1.31 1.59 -155.66 -0.25 1.06 16 10 C 0.11 2.29 4.66 -3.82 -0.02 2.27 16 11 N -0.65 -12.33 5.37 -106.72 -0.57 -12.91 16 12 C 0.10 1.66 1.83 -67.71 -0.12 1.54 16 13 H 0.06 1.02 7.47 -51.93 -0.39 0.63 16 14 C -0.12 -1.59 2.77 -89.81 -0.25 -1.84 16 15 C -0.13 -1.56 7.53 -25.91 -0.20 -1.75 16 16 C -0.14 -1.51 8.08 -25.92 -0.21 -1.72 16 17 C -0.14 -1.77 7.19 -25.92 -0.19 -1.95 16 18 C 0.09 1.52 3.05 -25.96 -0.08 1.45 16 19 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 20 C -0.15 -2.69 6.52 -25.17 -0.16 -2.85 16 21 C -0.15 -2.45 7.08 -25.17 -0.18 -2.63 16 22 C 0.05 0.74 7.65 37.93 0.29 1.03 16 23 O -0.36 -6.17 10.64 -35.23 -0.37 -6.55 16 24 C -0.22 -4.69 9.96 -26.69 -0.27 -4.96 16 25 C -0.16 -3.70 9.23 -26.69 -0.25 -3.94 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.07 1.72 7.07 -51.93 -0.37 1.35 16 28 H -0.01 -0.15 8.08 -51.93 -0.42 -0.57 16 29 H 0.33 6.22 7.83 -39.29 -0.31 5.91 16 30 H 0.10 1.47 7.76 -51.93 -0.40 1.06 16 31 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.11 2.51 5.49 -51.93 -0.29 2.22 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 45 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -27.30 360.89 -10.57 -37.87 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.47 Total: 9.26 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -2.27 Total: -25.27 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.13 Total: -36.99 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.37 Total: -6.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.30 -10.57 -37.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866350421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.052 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds